Wall clock time and date at job start Sat Apr 11 2020 06:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86808 * 119.99770 * 2 1 4 4 H 1.48501 * 109.46679 * 269.99828 * 3 2 1 5 5 H 1.48491 * 109.47288 * 29.99645 * 3 2 1 6 6 H 1.48502 * 109.47105 * 150.00148 * 3 2 1 7 7 C 1.38809 * 120.00459 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00529 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99593 * 0.02562 * 7 2 1 10 10 C 1.47066 * 136.05541 * 180.02562 * 9 7 2 11 11 C 1.53504 * 88.04678 * 207.05070 * 10 9 7 12 12 O 1.42904 * 114.20529 * 220.37448 * 11 10 9 13 13 C 1.53000 * 114.20366 * 87.54725 * 11 10 9 14 14 N 1.46506 * 109.46749 * 185.00010 * 13 11 10 15 15 C 1.34767 * 119.99718 * 180.02562 * 14 13 11 16 16 O 1.21282 * 120.00364 * 0.02562 * 15 14 13 17 17 C 1.50709 * 120.00019 * 179.97438 * 15 14 13 18 18 C 1.50696 * 109.46901 * 180.02562 * 17 15 14 19 19 C 1.36254 * 120.25897 * 264.71620 * 18 17 15 20 20 C 1.39336 * 121.01741 * 179.76887 * 19 18 17 21 21 C 1.36204 * 121.08627 * 0.52470 * 20 19 18 22 22 C 1.40331 * 119.51638 * 359.74072 * 21 20 19 23 23 C 1.40438 * 122.08775 * 179.97438 * 22 21 20 24 24 N 1.31241 * 119.88378 * 180.02562 * 23 22 21 25 25 C 1.32611 * 122.77835 * 359.97438 * 24 23 22 26 26 C 1.36158 * 121.88677 * 359.97438 * 25 24 23 27 27 C 1.40189 * 120.26216 * 85.00510 * 18 17 15 28 28 C 1.47064 * 136.05798 * 359.94252 * 9 7 2 29 29 H 0.97000 * 120.00117 * 0.02562 * 1 2 3 30 30 H 1.09002 * 113.46793 * 321.86042 * 10 9 7 31 31 H 1.08999 * 113.46805 * 92.24409 * 10 9 7 32 32 H 0.96700 * 113.99553 * 180.02562 * 12 11 10 33 33 H 1.08995 * 109.47181 * 304.99853 * 13 11 10 34 34 H 1.09002 * 109.47004 * 65.00367 * 13 11 10 35 35 H 0.96999 * 119.99544 * 359.97438 * 14 13 11 36 36 H 1.09000 * 109.46626 * 300.00106 * 17 15 14 37 37 H 1.08998 * 109.46608 * 59.99884 * 17 15 14 38 38 H 1.08001 * 119.49251 * 0.02884 * 19 18 17 39 39 H 1.07999 * 119.45345 * 180.24413 * 20 19 18 40 40 H 1.08000 * 120.24058 * 179.76832 * 21 20 19 41 41 H 1.08006 * 120.05550 * 0.02562 * 23 22 21 42 42 H 1.08009 * 119.05171 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.67094 * 180.02562 * 26 25 24 44 44 H 1.08999 * 113.47096 * 267.69901 * 28 9 7 45 45 H 1.09005 * 113.46966 * 38.08294 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 1.6801 -3.8153 0.0015 11 6 0.3420 -4.0941 -0.6972 12 8 -0.3321 -5.2632 -0.2269 13 6 0.3989 -3.9975 -2.2230 14 7 -0.9488 -4.1627 -2.7734 15 6 -1.1430 -4.1145 -4.1061 16 8 -0.2020 -3.9347 -4.8499 17 6 -2.5292 -4.2850 -4.6723 18 6 -2.4729 -4.1909 -6.1753 19 6 -2.7239 -3.0058 -6.7989 20 6 -2.6716 -2.8998 -8.1872 21 6 -2.3785 -3.9792 -8.9644 22 6 -2.1194 -5.2179 -8.3579 23 6 -1.8123 -6.3655 -9.1068 24 7 -1.5779 -7.5025 -8.4946 25 6 -1.6160 -7.6286 -7.1751 26 6 -1.9031 -6.5763 -6.3600 27 6 -2.1679 -5.3235 -6.9431 28 6 -0.0876 -2.7948 0.0011 29 1 -0.4850 0.8400 -0.0004 30 1 2.5484 -4.0474 -0.6153 31 1 1.7459 -4.2456 1.0008 32 1 -1.1744 -5.4361 -0.6693 33 1 0.7918 -3.0224 -2.5109 34 1 1.0490 -4.7808 -2.6127 35 1 -1.7011 -4.3076 -2.1785 36 1 -2.9219 -5.2601 -4.3840 37 1 -3.1795 -3.5018 -4.2829 38 1 -2.9631 -2.1341 -6.2078 39 1 -2.8711 -1.9470 -8.6549 40 1 -2.3452 -3.8824 -10.0395 41 1 -1.7691 -6.3125 -10.1847 42 1 -1.4126 -8.5934 -6.7343 43 1 -1.9284 -6.7011 -5.2876 44 1 -0.4932 -2.9538 1.0003 45 1 -0.7228 -2.1584 -0.6151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699915337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:42 Heat of formation + Delta-G solvation = 33.643856 kcal Electronic energy + Delta-G solvation = -28936.796797 eV Core-core repulsion = 24921.343359 eV Total energy + Delta-G solvation = -4015.453437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.16846 -39.82688 -38.74626 -37.50395 -35.16392 -34.09150 -33.97704 -32.08718 -31.53299 -30.78284 -28.80515 -27.58903 -25.83703 -24.82030 -24.34774 -23.76835 -22.47982 -21.58680 -20.31492 -19.06922 -18.22583 -17.76468 -17.21398 -16.93873 -16.83812 -16.29277 -15.52680 -15.43208 -14.95784 -14.81441 -14.62531 -14.34392 -14.10909 -13.96408 -13.85286 -13.63041 -13.40704 -13.04408 -12.85214 -12.60122 -12.37928 -12.15426 -12.01199 -11.79767 -11.73027 -11.21728 -11.12837 -11.05291 -10.92423 -10.53615 -10.33377 -10.12600 -9.79437 -9.67455 -9.63843 -9.21370 -9.11615 -8.90488 -8.84751 -8.19632 -7.01724 -5.87071 -3.20645 0.16387 0.75069 1.71335 2.71129 2.83476 3.27524 3.35066 3.39798 3.41394 3.91993 4.15295 4.26699 4.28867 4.47509 4.57708 4.58726 4.67716 4.78488 4.85203 4.92403 5.01667 5.09326 5.15491 5.16709 5.21650 5.26132 5.44063 5.51488 5.59696 5.60178 5.81620 5.85154 5.88646 6.18413 6.22585 6.29597 6.37904 6.43519 6.44696 6.52242 6.56748 6.64537 6.99144 7.05509 7.38847 7.53441 7.78819 7.84689 7.96572 8.30637 8.93199 9.59695 10.49552 11.30260 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014302 B = 0.002697 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.322564 B =10378.503183 C =11604.809357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.915 3.085 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.218 4.218 8 H 0.085 0.915 9 N -0.602 5.602 10 C 0.138 3.862 11 C 0.049 3.951 12 O -0.550 6.550 13 C 0.130 3.870 14 N -0.724 5.724 15 C 0.514 3.486 16 O -0.528 6.528 17 C -0.106 4.106 18 C -0.054 4.054 19 C -0.086 4.086 20 C -0.113 4.113 21 C -0.091 4.091 22 C -0.112 4.112 23 C 0.144 3.856 24 N -0.491 5.491 25 C 0.073 3.927 26 C -0.149 4.149 27 C -0.007 4.007 28 C 0.138 3.862 29 H 0.254 0.746 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.362 0.638 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.396 0.604 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.162 0.838 42 H 0.152 0.848 43 H 0.134 0.866 44 H 0.034 0.966 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.740 -11.580 -14.645 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.745 3.255 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.345 4.345 8 H 0.102 0.898 9 N -0.330 5.330 10 C 0.011 3.989 11 C 0.007 3.993 12 O -0.354 6.354 13 C 0.006 3.994 14 N -0.377 5.377 15 C 0.299 3.701 16 O -0.404 6.404 17 C -0.146 4.146 18 C -0.055 4.055 19 C -0.105 4.105 20 C -0.131 4.131 21 C -0.111 4.111 22 C -0.114 4.114 23 C -0.028 4.028 24 N -0.199 5.199 25 C -0.069 4.069 26 C -0.168 4.168 27 C -0.012 4.012 28 C 0.012 3.988 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.208 0.792 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.230 0.770 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.179 0.821 42 H 0.169 0.831 43 H 0.152 0.848 44 H 0.051 0.949 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.241 -11.946 -15.130 21.378 hybrid contribution -0.573 1.743 0.778 1.993 sum -9.814 -10.203 -14.352 20.160 Atomic orbital electron populations 1.69817 1.05053 1.25498 1.56168 1.24808 0.95747 0.97635 1.02030 0.86072 0.78623 0.83069 0.77726 1.21365 1.21560 1.20528 1.18900 0.90185 0.80863 1.44546 0.89764 1.45219 1.02510 0.99167 1.86068 1.22329 0.92662 0.86462 0.97428 1.23886 0.97539 0.86151 0.91697 1.86588 1.37537 1.46353 1.64885 1.21516 0.82780 1.03605 0.91479 1.45884 1.10936 1.74050 1.06826 1.20321 0.90622 0.76988 0.82147 1.90752 1.43498 1.47743 1.58409 1.20709 0.96137 1.05453 0.92316 1.19020 0.99674 0.93081 0.93708 1.20906 0.97660 0.97004 0.94919 1.20898 0.99599 0.98999 0.93613 1.20953 0.98535 0.91573 1.00040 1.18991 1.02952 0.96009 0.93434 1.23169 0.92783 0.86896 0.99932 1.67403 1.13474 1.27220 1.11803 1.22132 0.96979 0.99011 0.88822 1.21879 1.00952 0.92815 1.01196 1.17932 0.96958 0.93757 0.92570 1.22742 0.89500 0.89345 0.97248 0.93584 0.93358 0.93507 0.79214 0.88768 0.91478 0.77033 0.87760 0.87250 0.85363 0.85394 0.84980 0.82107 0.83106 0.84817 0.94859 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.47 11.51 55.49 0.64 -25.83 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 3 Si 0.92 21.88 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.22 -6.01 10.75 -15.06 -0.16 -6.17 16 8 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 9 N -0.60 -15.09 3.56 -184.53 -0.66 -15.75 16 10 C 0.14 2.86 8.10 -8.50 -0.07 2.79 16 11 C 0.05 0.89 1.74 -90.03 -0.16 0.73 16 12 O -0.55 -8.51 13.56 -35.23 -0.48 -8.99 16 13 C 0.13 2.23 5.32 -4.04 -0.02 2.21 16 14 N -0.72 -9.70 5.32 -60.29 -0.32 -10.02 16 15 C 0.51 7.24 7.82 -10.99 -0.09 7.16 16 16 O -0.53 -9.93 16.03 5.56 0.09 -9.84 16 17 C -0.11 -1.05 5.28 -29.03 -0.15 -1.20 16 18 C -0.05 -0.63 4.38 -104.61 -0.46 -1.08 16 19 C -0.09 -0.92 9.58 -39.89 -0.38 -1.30 16 20 C -0.11 -1.06 9.94 -39.90 -0.40 -1.46 16 21 C -0.09 -0.84 9.81 -39.53 -0.39 -1.23 16 22 C -0.11 -1.25 5.74 -106.86 -0.61 -1.86 16 23 C 0.14 1.49 11.05 -16.98 -0.19 1.30 16 24 N -0.49 -5.84 10.30 -13.15 -0.14 -5.98 16 25 C 0.07 0.81 11.06 -17.96 -0.20 0.61 16 26 C -0.15 -1.65 9.36 -39.40 -0.37 -2.02 16 27 C -0.01 -0.08 5.75 -106.81 -0.61 -0.70 16 28 C 0.14 3.10 6.81 -8.43 -0.06 3.04 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.36 3.92 7.50 45.56 0.34 4.27 16 33 H 0.09 2.01 7.94 -51.93 -0.41 1.60 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.40 4.02 7.24 -40.82 -0.30 3.73 16 36 H 0.10 0.74 6.79 -51.93 -0.35 0.39 16 37 H 0.11 0.86 8.04 -51.93 -0.42 0.44 16 38 H 0.13 1.20 8.05 -52.49 -0.42 0.77 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 42 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 43 H 0.13 1.24 6.65 -52.49 -0.35 0.89 16 44 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.81 7.10 -51.93 -0.37 1.45 16 LS Contribution 379.37 15.07 5.72 5.72 Total: -1.00 -35.94 379.37 -9.78 -45.72 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.20 Total: 7.54 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -4.41 Total: 0.58 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.48 Total: -57.58 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.39 Total: -18.83 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.94 -9.78 -45.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699915337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.363 kcal (2) G-P(sol) polarization free energy of solvation -35.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds