Wall clock time and date at job start Sat Apr 11 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99726 * 2 1 4 4 H 1.48502 * 109.47132 * 269.99897 * 3 2 1 5 5 H 1.48507 * 109.47258 * 29.99838 * 3 2 1 6 6 H 1.48501 * 109.47641 * 150.00062 * 3 2 1 7 7 C 1.38811 * 120.00659 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00232 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99601 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99928 * 173.77314 * 9 7 2 11 11 C 1.53008 * 112.84324 * 294.85903 * 10 9 7 12 12 N 1.46498 * 109.47326 * 292.09983 * 11 10 9 13 13 C 1.34769 * 120.00000 * 180.19558 * 12 11 10 14 14 O 1.21585 * 120.00011 * 0.02562 * 13 12 11 15 15 C 1.47562 * 119.99997 * 180.02562 * 13 12 11 16 16 C 1.38913 * 120.29788 * 0.02562 * 15 13 12 17 17 C 1.40554 * 118.06632 * 179.97438 * 16 15 13 18 18 C 1.40548 * 121.12271 * 179.97438 * 17 16 15 19 19 C 1.36152 * 119.63505 * 180.02562 * 18 17 16 20 20 C 1.39325 * 120.83237 * 359.70671 * 19 18 17 21 21 C 1.36144 * 121.07845 * 0.58094 * 20 19 18 22 22 C 1.40540 * 119.82339 * 359.44464 * 21 20 19 23 23 N 1.33821 * 120.74147 * 180.23220 * 22 21 20 24 24 C 1.31376 * 121.65821 * 179.97438 * 23 22 21 25 25 O 1.35411 * 119.31902 * 180.02562 * 24 23 22 26 26 C 1.53778 * 113.69489 * 66.12502 * 10 9 7 27 27 C 1.53783 * 87.07947 * 89.12793 * 26 10 9 28 28 C 1.53778 * 113.61575 * 163.66495 * 10 9 7 29 29 H 0.97003 * 120.00608 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00353 * 353.76122 * 9 7 2 31 31 H 1.09007 * 109.46431 * 172.10522 * 11 10 9 32 32 H 1.08997 * 109.46988 * 52.10766 * 11 10 9 33 33 H 0.97004 * 119.99595 * 0.20369 * 12 11 10 34 34 H 1.08000 * 120.96158 * 359.95605 * 16 15 13 35 35 H 1.07997 * 120.17908 * 0.04258 * 18 17 16 36 36 H 1.08003 * 119.58085 * 179.97438 * 19 18 17 37 37 H 1.07998 * 119.46260 * 180.30009 * 20 19 18 38 38 H 1.07995 * 120.08674 * 179.72760 * 21 20 19 39 39 H 0.96706 * 113.99261 * 269.99625 * 25 24 23 40 40 H 1.09000 * 113.61355 * 203.67737 * 26 10 9 41 41 H 1.08997 * 113.61519 * 334.58259 * 26 10 9 42 42 H 1.08995 * 113.61795 * 270.88780 * 27 26 10 43 43 H 1.08999 * 113.61452 * 139.97471 * 27 26 10 44 44 H 1.09003 * 113.61348 * 25.35052 * 28 10 9 45 45 H 1.08998 * 113.61462 * 156.24294 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4474 2.6528 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0518 -3.6530 -0.1365 11 6 2.7384 -3.7995 -1.4960 12 7 1.7234 -3.9336 -2.5438 13 6 2.0980 -4.0800 -3.8301 14 8 3.2783 -4.1013 -4.1209 15 6 1.0756 -4.2146 -4.8856 16 6 -0.2748 -4.1906 -4.5604 17 6 -1.2084 -4.3221 -5.6027 18 6 -2.5903 -4.3071 -5.3464 19 6 -3.4680 -4.4374 -6.3791 20 6 -3.0139 -4.5795 -7.6886 21 6 -1.6825 -4.6040 -7.9720 22 6 -0.7444 -4.4728 -6.9338 23 7 0.5686 -4.4897 -7.1921 24 6 1.4611 -4.3680 -6.2357 25 8 2.7778 -4.3910 -6.5508 26 6 2.9707 -3.9703 1.0550 27 6 1.7630 -4.6720 1.6984 28 6 1.2268 -4.8844 0.2729 29 1 -0.4851 0.8400 -0.0004 30 1 0.3599 -2.3906 0.0915 31 1 3.3727 -4.6860 -1.4890 32 1 3.3485 -2.9178 -1.6918 33 1 0.7817 -3.9169 -2.3117 34 1 -0.5977 -4.0746 -3.5363 35 1 -2.9538 -4.1925 -4.3360 36 1 -4.5296 -4.4261 -6.1811 37 1 -3.7297 -4.6764 -8.4915 38 1 -1.3482 -4.7193 -8.9924 39 1 3.1695 -5.2751 -6.5393 40 1 3.7884 -4.6474 0.8077 41 1 3.3021 -3.0856 1.5986 42 1 1.1443 -4.0094 2.3034 43 1 2.0189 -5.5992 2.2111 44 1 0.1502 -4.7377 0.1848 45 1 1.5676 -5.8113 -0.1884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700137225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:43 Heat of formation + Delta-G solvation = -5.876985 kcal Electronic energy + Delta-G solvation = -29317.233626 eV Core-core repulsion = 25300.066436 eV Total energy + Delta-G solvation = -4017.167190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.19973 -40.83328 -39.91837 -38.99120 -36.87680 -35.47092 -35.22053 -34.53545 -31.99478 -31.51950 -30.75924 -28.67438 -26.71788 -25.98630 -25.54049 -24.70710 -23.36632 -22.94126 -21.90773 -20.17484 -19.85790 -19.29278 -19.13314 -18.73263 -17.60260 -16.98673 -16.89594 -16.54237 -16.23899 -16.01180 -15.78375 -15.59377 -15.37367 -15.30415 -15.08965 -14.79848 -14.50385 -14.37191 -14.13754 -13.68973 -13.08154 -13.00879 -12.96306 -12.93287 -12.67307 -12.55283 -12.44400 -12.41219 -12.16812 -11.93732 -11.69744 -11.60397 -11.47959 -11.29108 -10.92135 -10.81610 -10.51405 -10.07477 -9.73169 -9.29744 -8.98490 -7.95286 -5.20965 -0.89439 -0.53030 0.79909 1.42646 1.43329 1.45997 1.51106 2.05484 2.20694 2.50649 2.53697 2.97110 3.34508 3.38503 3.45820 3.54292 3.73777 3.75198 3.82314 3.97664 4.02252 4.11427 4.18959 4.23706 4.30041 4.33663 4.55357 4.61427 4.65088 4.83894 4.87566 4.92124 4.93419 5.02317 5.02979 5.14633 5.28457 5.30992 5.35979 5.42969 5.46151 5.47442 5.62682 5.71721 5.82740 6.29884 6.45317 6.55317 6.74042 7.17631 7.36699 8.10025 8.34115 9.27017 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.003319 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.828235 B = 8434.027841 C = 8962.786713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.062 4.062 3 Si 0.951 3.049 4 H -0.299 1.299 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.222 4.222 8 H 0.065 0.935 9 N -0.704 5.704 10 C 0.158 3.842 11 C 0.129 3.871 12 N -0.693 5.693 13 C 0.556 3.444 14 O -0.564 6.564 15 C -0.220 4.220 16 C 0.013 3.987 17 C -0.135 4.135 18 C -0.086 4.086 19 C -0.118 4.118 20 C -0.068 4.068 21 C -0.125 4.125 22 C 0.143 3.857 23 N -0.521 5.521 24 C 0.377 3.623 25 O -0.477 6.477 26 C -0.150 4.150 27 C -0.120 4.120 28 C -0.127 4.127 29 H 0.249 0.751 30 H 0.379 0.621 31 H 0.075 0.925 32 H 0.030 0.970 33 H 0.405 0.595 34 H 0.169 0.831 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.168 0.832 38 H 0.144 0.856 39 H 0.418 0.582 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.714 -16.602 -9.703 21.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.255 4.255 3 Si 0.782 3.218 4 H -0.227 1.227 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.354 4.354 8 H 0.083 0.917 9 N -0.344 5.344 10 C 0.066 3.934 11 C 0.003 3.997 12 N -0.343 5.343 13 C 0.343 3.657 14 O -0.444 6.444 15 C -0.227 4.227 16 C -0.013 4.013 17 C -0.137 4.137 18 C -0.104 4.104 19 C -0.135 4.135 20 C -0.087 4.087 21 C -0.144 4.144 22 C 0.022 3.978 23 N -0.241 5.241 24 C 0.182 3.818 25 O -0.286 6.286 26 C -0.190 4.190 27 C -0.157 4.157 28 C -0.164 4.164 29 H 0.058 0.942 30 H 0.212 0.788 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.242 0.758 34 H 0.187 0.813 35 H 0.176 0.824 36 H 0.183 0.817 37 H 0.186 0.814 38 H 0.162 0.838 39 H 0.279 0.721 40 H 0.112 0.888 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.531 -15.990 -10.808 20.717 hybrid contribution 0.165 1.302 0.938 1.613 sum -7.366 -14.688 -9.870 19.168 Atomic orbital electron populations 1.69734 1.05872 1.25654 1.59665 1.25239 0.96159 0.99936 1.04143 0.85480 0.78149 0.81326 0.76880 1.22660 1.22027 1.19889 1.19282 0.90981 0.85008 1.40172 0.91746 1.42086 1.05790 0.99791 1.86704 1.21128 0.94402 0.87078 0.90771 1.21756 0.90485 0.99771 0.87659 1.45606 1.11131 1.72038 1.05548 1.18072 0.87947 0.76937 0.82778 1.90749 1.18943 1.52121 1.82607 1.21030 0.95083 1.12284 0.94264 1.22291 0.90262 0.87862 1.00887 1.19004 0.96278 1.05249 0.93172 1.21438 0.89838 0.97037 1.02094 1.21431 1.01871 0.98217 0.91992 1.21461 0.94921 0.94021 0.98334 1.21039 0.92556 1.02246 0.98516 1.19166 0.88903 0.96501 0.93229 1.67534 1.02506 1.17924 1.36125 1.19279 0.85260 0.91026 0.86218 1.84679 1.16932 1.35672 1.91324 1.23339 0.97628 1.00111 0.97943 1.22554 0.96950 1.00185 0.96058 1.23116 0.99751 0.96825 0.96738 0.94182 0.78786 0.90682 0.95115 0.75828 0.81347 0.82449 0.81652 0.81417 0.83811 0.72056 0.88767 0.93520 0.91982 0.89621 0.91103 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.34 13.07 21.65 0.28 -55.05 16 2 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 3 Si 0.95 46.24 29.55 68.60 2.03 48.26 16 4 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 6 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.22 -11.66 9.05 84.03 0.76 -10.90 16 8 H 0.06 3.42 7.83 -2.91 -0.02 3.39 16 9 N -0.70 -31.35 5.19 -300.96 -1.56 -32.91 16 10 C 0.16 5.40 0.80 4.13 0.00 5.41 16 11 C 0.13 4.58 5.08 86.38 0.44 5.02 16 12 N -0.69 -22.81 5.37 -466.24 -2.50 -25.31 16 13 C 0.56 19.80 7.77 86.70 0.67 20.47 16 14 O -0.56 -23.52 15.14 17.02 0.26 -23.26 16 15 C -0.22 -6.86 5.90 -19.92 -0.12 -6.98 16 16 C 0.01 0.33 9.38 23.00 0.22 0.54 16 17 C -0.14 -3.14 5.74 -21.28 -0.12 -3.26 16 18 C -0.09 -1.39 9.77 22.35 0.22 -1.17 16 19 C -0.12 -1.39 9.96 22.05 0.22 -1.17 16 20 C -0.07 -0.84 9.94 22.04 0.22 -0.62 16 21 C -0.12 -2.37 9.97 22.34 0.22 -2.15 16 22 C 0.14 3.71 6.61 40.27 0.27 3.98 16 23 N -0.52 -16.01 10.33 -301.40 -3.11 -19.12 16 24 C 0.38 12.20 7.74 85.50 0.66 12.86 16 25 O -0.48 -15.39 11.60 -66.05 -0.77 -16.15 16 26 C -0.15 -4.72 7.28 31.12 0.23 -4.49 16 27 C -0.12 -3.23 7.99 31.12 0.25 -2.98 16 28 C -0.13 -3.26 7.04 31.12 0.22 -3.04 16 29 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 30 H 0.38 17.86 7.87 -92.71 -0.73 17.13 16 31 H 0.08 2.38 8.01 -2.38 -0.02 2.37 16 32 H 0.03 1.33 7.80 -2.39 -0.02 1.31 16 33 H 0.41 11.84 6.36 -92.70 -0.59 11.25 16 34 H 0.17 3.41 6.47 -2.91 -0.02 3.39 16 35 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.17 0.86 8.06 -2.91 -0.02 0.83 16 37 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 38 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 39 H 0.42 9.57 9.06 -74.05 -0.67 8.90 16 40 H 0.09 2.49 8.01 -2.39 -0.02 2.47 16 41 H 0.05 1.73 7.87 -2.39 -0.02 1.71 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.07 1.78 8.09 -2.39 -0.02 1.76 16 45 H 0.11 2.21 8.10 -2.39 -0.02 2.19 16 Total: -1.00 -74.42 379.39 -1.49 -75.90 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -0.93 Total: 39.07 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 4.82 Total: 8.57 kcal Atomic # 7 Polarization: -125.50 SS G_CDS: -6.90 Total: -132.40 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -0.51 Total: -39.41 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -74.42 -1.49 -75.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700137225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.024 kcal (2) G-P(sol) polarization free energy of solvation -74.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds