Wall clock time and date at job start Sat Apr 11 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00129 * 2 1 4 4 H 1.48503 * 109.47241 * 270.00348 * 3 2 1 5 5 H 1.48506 * 109.46851 * 30.00089 * 3 2 1 6 6 H 1.48498 * 109.47565 * 150.00131 * 3 2 1 7 7 C 1.38815 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99964 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00063 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00053 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47302 * 179.97438 * 10 9 7 12 12 C 1.53780 * 113.61733 * 184.99803 * 11 10 9 13 13 C 1.53782 * 87.08105 * 220.02292 * 12 11 10 14 14 N 1.46503 * 113.61516 * 139.98561 * 13 12 11 15 15 C 1.34775 * 119.99739 * 156.52622 * 14 13 12 16 16 O 1.21647 * 120.00557 * 359.97438 * 15 14 13 17 17 C 1.47141 * 119.99438 * 179.97438 * 15 14 13 18 18 N 1.35876 * 126.62014 * 354.74732 * 17 15 14 19 19 C 1.29934 * 108.74351 * 179.97438 * 18 17 15 20 20 O 1.34052 * 109.77793 * 0.24434 * 19 18 17 21 21 C 1.34773 * 108.23477 * 359.60303 * 20 19 18 22 22 C 1.47576 * 126.75786 * 180.14766 * 21 20 19 23 23 C 1.39692 * 120.15333 * 129.28117 * 22 21 20 24 24 C 1.37936 * 119.83716 * 179.71867 * 23 22 21 25 25 C 1.38378 * 120.15563 * 0.58283 * 24 23 22 26 26 C 1.38372 * 120.31610 * 359.68735 * 25 24 23 27 27 C 1.37933 * 120.15994 * 0.02562 * 26 25 24 28 28 C 1.53773 * 87.17474 * 25.38977 * 13 12 11 29 29 H 0.96996 * 120.00256 * 0.02562 * 1 2 3 30 30 H 0.97002 * 119.99914 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47520 * 59.99601 * 10 9 7 32 32 H 1.09004 * 109.47402 * 299.99679 * 10 9 7 33 33 H 1.09002 * 112.84938 * 316.19811 * 11 10 9 34 34 H 1.08999 * 113.61585 * 105.47026 * 12 11 10 35 35 H 1.09002 * 113.68855 * 334.58087 * 12 11 10 36 36 H 1.09007 * 113.60969 * 270.80040 * 13 12 11 37 37 H 0.96992 * 119.99702 * 336.51720 * 14 13 12 38 38 H 1.07993 * 125.11314 * 179.97438 * 19 18 17 39 39 H 1.07997 * 120.07809 * 0.02562 * 23 22 21 40 40 H 1.08004 * 119.91847 * 180.31594 * 24 23 22 41 41 H 1.08001 * 119.83783 * 179.72171 * 25 24 23 42 42 H 1.08005 * 119.92034 * 180.02562 * 26 25 24 43 43 H 1.07993 * 120.08296 * 180.02562 * 27 26 25 44 44 H 1.08999 * 113.61771 * 89.16261 * 28 13 12 45 45 H 1.09004 * 113.61605 * 220.06793 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 2.0582 -3.6568 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 6 1.7305 -6.2001 0.1205 13 6 0.7054 -6.6996 -0.9113 14 7 1.2682 -7.6260 -1.8969 15 6 0.4640 -8.4939 -2.5420 16 8 -0.7292 -8.5086 -2.3057 17 6 1.0293 -9.4239 -3.5323 18 7 2.3147 -9.4573 -3.9714 19 6 2.4337 -10.4144 -4.8421 20 8 1.2530 -11.0276 -5.0064 21 6 0.3536 -10.4348 -4.1964 22 6 -1.0715 -10.7890 -4.0500 23 6 -1.6151 -11.0006 -2.7807 24 6 -2.9494 -11.3257 -2.6511 25 6 -3.7459 -11.4543 -3.7753 26 6 -3.2127 -11.2517 -5.0360 27 6 -1.8816 -10.9203 -5.1804 28 6 0.6151 -5.2482 -1.4112 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0016 31 1 2.6842 -3.7149 0.8888 32 1 2.6855 -3.7142 -0.8912 33 1 0.2376 -4.6706 0.6927 34 1 1.6163 -6.6543 1.1047 35 1 2.7591 -6.2233 -0.2395 36 1 -0.2194 -7.0663 -0.4656 37 1 2.2196 -7.6145 -2.0851 38 1 3.3456 -10.6738 -5.3593 39 1 -0.9935 -10.9049 -1.9028 40 1 -3.3723 -11.4846 -1.6701 41 1 -4.7889 -11.7135 -3.6682 42 1 -3.8403 -11.3534 -5.9091 43 1 -1.4668 -10.7621 -6.1649 44 1 1.3379 -5.0093 -2.1913 45 1 -0.3985 -4.9349 -1.6616 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700373414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:51 Heat of formation + Delta-G solvation = 47.285156 kcal Electronic energy + Delta-G solvation = -28015.710428 eV Core-core repulsion = 24000.848522 eV Total energy + Delta-G solvation = -4014.861906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.68621 -40.01541 -39.28907 -38.22726 -35.24090 -34.52219 -33.18509 -32.80171 -31.27917 -30.82588 -29.25535 -26.88833 -25.47221 -24.96224 -23.76030 -23.23467 -22.69207 -21.88760 -21.08331 -20.51907 -19.54246 -18.47409 -17.47582 -17.13378 -17.01973 -16.47165 -16.21131 -15.65281 -15.28715 -15.06599 -14.82522 -14.53088 -14.46411 -14.12092 -13.81414 -13.75455 -13.34169 -13.11430 -13.02849 -12.93052 -12.23970 -11.90052 -11.82776 -11.67814 -11.57666 -11.48714 -11.19388 -11.13080 -10.83209 -10.72527 -10.32261 -10.22471 -10.07941 -9.84969 -9.79874 -9.59438 -9.24054 -8.97760 -8.81263 -8.70285 -6.86055 -5.71747 -2.99973 0.27707 1.10374 1.20517 1.71054 2.14426 3.01314 3.11925 3.44707 3.46470 3.51185 3.53165 3.69322 4.15432 4.49405 4.57498 4.61839 4.63689 4.73290 4.78046 4.86421 4.98356 5.05340 5.08248 5.15216 5.16214 5.30365 5.53476 5.61318 5.64570 5.69022 5.78080 5.88469 5.96451 6.06782 6.09400 6.10899 6.13521 6.17769 6.28225 6.33291 6.46710 6.57748 6.65221 6.82724 6.95957 7.03498 7.49196 7.73878 8.08637 8.47469 9.58279 10.17870 10.52386 11.51281 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016387 B = 0.002001 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.247383 B =13987.080088 C =14737.155017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.165 3.835 11 C -0.110 4.110 12 C -0.136 4.136 13 C 0.118 3.882 14 N -0.698 5.698 15 C 0.597 3.403 16 O -0.526 6.526 17 C -0.055 4.055 18 N -0.460 5.460 19 C 0.178 3.822 20 O -0.192 6.192 21 C 0.079 3.921 22 C -0.031 4.031 23 C -0.045 4.045 24 C -0.121 4.121 25 C -0.099 4.099 26 C -0.127 4.127 27 C -0.087 4.087 28 C -0.138 4.138 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.408 0.592 38 H 0.257 0.743 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.084 0.916 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.970 -30.533 -10.016 32.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.038 3.962 11 C -0.129 4.129 12 C -0.175 4.175 13 C 0.014 3.986 14 N -0.348 5.348 15 C 0.382 3.618 16 O -0.402 6.402 17 C -0.176 4.176 18 N -0.188 5.188 19 C -0.050 4.050 20 O -0.078 6.078 21 C 0.022 3.978 22 C -0.032 4.032 23 C -0.063 4.063 24 C -0.139 4.139 25 C -0.117 4.117 26 C -0.145 4.145 27 C -0.106 4.106 28 C -0.177 4.177 29 H 0.064 0.936 30 H 0.218 0.782 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.132 0.868 37 H 0.243 0.757 38 H 0.273 0.727 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.103 0.897 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.189 -30.022 -9.647 31.556 hybrid contribution 0.443 0.677 -0.538 0.972 sum -0.746 -29.345 -10.185 31.071 Atomic orbital electron populations 1.69663 1.05095 1.25580 1.57923 1.24748 0.95533 0.97687 1.03210 0.86188 0.78624 0.83898 0.77482 1.21777 1.21791 1.20796 1.19242 0.91009 0.84269 1.42415 0.91252 1.42358 1.05903 0.99971 1.89371 1.20601 0.92884 0.85129 0.97632 1.22562 0.99446 0.93851 0.97057 1.23332 0.98772 0.96688 0.98705 1.22750 0.98315 0.88224 0.89306 1.45870 1.11774 1.36140 1.41019 1.16662 0.85899 0.79496 0.79708 1.90863 1.14101 1.70374 1.64882 1.22080 0.89945 1.00971 1.04653 1.70665 1.17629 1.19098 1.11442 1.28049 0.88652 0.90412 0.97855 1.84492 1.19464 1.51530 1.52321 1.21846 0.90522 0.93623 0.91762 1.17453 0.85965 1.05021 0.94765 1.21055 0.95583 0.94205 0.95464 1.21066 0.93270 1.00423 0.99159 1.21352 0.99963 0.97850 0.92522 1.21033 0.94806 1.00849 0.97827 1.21209 0.94002 0.97893 0.97458 1.23482 1.02611 0.93793 0.97784 0.93553 0.78249 0.96323 0.96328 0.88808 0.90912 0.89586 0.86794 0.75672 0.72743 0.85632 0.85232 0.85578 0.85410 0.85707 0.89741 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.90 13.06 55.49 0.72 -28.17 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.03 5.60 -59.91 -0.34 -19.36 16 10 C 0.17 3.36 6.10 -4.04 -0.02 3.34 16 11 C -0.11 -1.78 3.75 -89.71 -0.34 -2.12 16 12 C -0.14 -1.72 7.39 -25.92 -0.19 -1.91 16 13 C 0.12 1.56 4.21 -67.12 -0.28 1.28 16 14 N -0.70 -8.76 5.36 -54.18 -0.29 -9.05 16 15 C 0.60 8.25 7.75 -12.65 -0.10 8.15 16 16 O -0.53 -8.34 13.45 5.24 0.07 -8.27 16 17 C -0.06 -0.68 7.04 -82.35 -0.58 -1.26 16 18 N -0.46 -4.84 11.05 -11.04 -0.12 -4.96 16 19 C 0.18 1.28 13.16 51.96 0.68 1.97 16 20 O -0.19 -1.74 10.75 5.08 0.05 -1.69 16 21 C 0.08 0.88 6.84 -35.66 -0.24 0.64 16 22 C -0.03 -0.34 5.26 -105.00 -0.55 -0.90 16 23 C -0.04 -0.48 7.74 -39.15 -0.30 -0.78 16 24 C -0.12 -1.08 10.03 -39.64 -0.40 -1.48 16 25 C -0.10 -0.78 10.04 -39.48 -0.40 -1.17 16 26 C -0.13 -1.01 10.03 -39.64 -0.40 -1.41 16 27 C -0.09 -0.82 9.79 -39.15 -0.38 -1.20 16 28 C -0.14 -2.15 7.45 -25.83 -0.19 -2.35 16 29 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.38 10.50 7.67 -40.82 -0.31 10.19 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 33 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.01 8.07 -51.93 -0.42 0.59 16 36 H 0.11 1.58 7.50 -51.93 -0.39 1.19 16 37 H 0.41 4.58 8.45 -40.82 -0.34 4.24 16 38 H 0.26 0.42 8.06 -52.49 -0.42 0.00 16 39 H 0.13 1.35 7.61 -52.49 -0.40 0.95 16 40 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 41 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 42 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.08 1.36 7.90 -51.93 -0.41 0.95 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -35.15 386.27 -9.08 -44.23 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -6.04 Total: 10.39 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -3.94 Total: -6.74 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -0.02 Total: -61.55 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.13 Total: -9.96 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.15 -9.08 -44.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700373414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.512 kcal (2) G-P(sol) polarization free energy of solvation -35.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds