Wall clock time and date at job start Sat Apr 11 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99850 * 2 1 4 4 H 1.48496 * 109.47263 * 239.99788 * 3 2 1 5 5 H 1.48499 * 109.47347 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47263 * 120.00071 * 3 2 1 7 7 C 1.38807 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00190 * 160.98530 * 7 2 1 9 9 N 1.36940 * 120.00206 * 340.98722 * 7 2 1 10 10 C 1.46505 * 119.99612 * 319.90292 * 9 7 2 11 11 C 1.52997 * 109.46971 * 270.00138 * 10 9 7 12 12 N 1.46504 * 109.46904 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99797 * 180.02562 * 12 11 10 14 14 O 1.21641 * 120.00400 * 359.97438 * 13 12 11 15 15 C 1.47103 * 119.99953 * 179.97438 * 13 12 11 16 16 C 1.42474 * 128.38214 * 5.02296 * 15 13 12 17 17 N 1.29874 * 106.40823 * 180.27523 * 16 15 13 18 18 O 1.20741 * 112.76214 * 359.74058 * 17 16 15 19 19 C 1.34231 * 111.94758 * 0.02562 * 18 17 16 20 20 C 1.47559 * 127.17835 * 180.02562 * 19 18 17 21 21 C 1.39706 * 120.15770 * 227.61383 * 20 19 18 22 22 C 1.37922 * 119.83790 * 179.97438 * 21 20 19 23 23 C 1.38381 * 120.16270 * 0.02562 * 22 21 20 24 24 C 1.38378 * 120.31536 * 359.97438 * 23 22 21 25 25 C 1.37925 * 120.15760 * 0.02562 * 24 23 22 26 26 C 1.46498 * 120.00237 * 139.90889 * 9 7 2 27 27 C 1.52995 * 117.49991 * 12.72100 * 26 9 7 28 28 C 1.53003 * 117.49408 * 304.05919 * 26 9 7 29 29 H 0.96997 * 120.00013 * 5.02979 * 1 2 3 30 30 H 1.09000 * 109.46657 * 150.00240 * 10 9 7 31 31 H 1.08993 * 109.47089 * 30.00051 * 10 9 7 32 32 H 1.08991 * 109.47375 * 60.00199 * 11 10 9 33 33 H 1.09007 * 109.47181 * 299.99951 * 11 10 9 34 34 H 0.96998 * 119.99997 * 359.97438 * 12 11 10 35 35 H 1.08008 * 126.79481 * 0.02562 * 16 15 13 36 36 H 1.08003 * 120.07985 * 359.97438 * 21 20 19 37 37 H 1.08003 * 119.92058 * 179.71784 * 22 21 20 38 38 H 1.07993 * 119.84444 * 179.97438 * 23 22 21 39 39 H 1.07994 * 119.92552 * 180.02562 * 24 23 22 40 40 H 1.08006 * 120.08334 * 180.02562 * 25 24 23 41 41 H 1.08997 * 115.55007 * 158.39472 * 26 9 7 42 42 H 1.09003 * 117.49922 * 359.97438 * 27 26 9 43 43 H 1.09002 * 117.49925 * 145.02625 * 27 26 9 44 44 H 1.09003 * 117.49785 * 214.97931 * 28 26 9 45 45 H 1.08996 * 117.50295 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0461 -1.2278 -0.3042 9 7 1.3816 -2.3555 0.3874 10 6 0.4583 -2.3404 1.5248 11 6 1.2309 -2.6322 2.8127 12 7 0.3075 -2.6177 3.9500 13 6 0.7681 -2.8507 5.1950 14 8 1.9504 -3.0734 5.3744 15 6 -0.1589 -2.8356 6.3370 16 6 -1.5765 -2.6935 6.3239 17 7 -1.9607 -2.7330 7.5639 18 8 -1.0416 -2.8780 8.3333 19 6 0.1375 -2.9593 7.6969 20 6 1.4694 -3.1372 8.3064 21 6 2.5352 -2.3237 7.9141 22 6 3.7773 -2.4954 8.4886 23 6 3.9693 -3.4710 9.4510 24 6 2.9182 -4.2805 9.8445 25 6 1.6707 -4.1201 9.2787 26 6 1.6325 -3.6046 -0.3359 27 6 2.8126 -3.6325 -1.3092 28 6 1.3788 -3.6102 -1.8448 29 1 -0.4850 0.8368 -0.0736 30 1 -0.3083 -3.1018 1.3805 31 1 -0.0124 -1.3601 1.5976 32 1 1.9975 -1.8709 2.9570 33 1 1.7017 -3.6127 2.7399 34 1 -0.6352 -2.4397 3.8071 35 1 -2.2065 -2.5724 5.4550 36 1 2.3869 -1.5621 7.1628 37 1 4.6033 -1.8703 8.1830 38 1 4.9441 -3.6013 9.8972 39 1 3.0751 -5.0396 10.5965 40 1 0.8510 -4.7523 9.5870 41 1 1.4125 -4.5191 0.2148 42 1 3.4022 -2.7214 -1.4116 43 1 3.3689 -4.5656 -1.3990 44 1 0.9924 -4.5286 -2.2868 45 1 1.0249 -2.6848 -2.2991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713564017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:59 Heat of formation + Delta-G solvation = 105.153424 kcal Electronic energy + Delta-G solvation = -28712.115708 eV Core-core repulsion = 24699.763159 eV Total energy + Delta-G solvation = -4012.352550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.10007 -39.48340 -38.98477 -37.12501 -34.85361 -34.16418 -33.28904 -33.10722 -31.13192 -30.92879 -29.84299 -27.82929 -25.14694 -24.14949 -23.76298 -22.61964 -22.01167 -21.41253 -21.12092 -20.34846 -19.80567 -18.52066 -17.84244 -17.31161 -16.38496 -16.16530 -15.65371 -15.50992 -15.11499 -14.89258 -14.87160 -14.63602 -14.39926 -13.94242 -13.63314 -13.50238 -13.35604 -12.99660 -12.82449 -12.59710 -12.00792 -11.86183 -11.62885 -11.50944 -11.31653 -11.03779 -10.83322 -10.79114 -10.69076 -10.38935 -10.20370 -10.03244 -9.97170 -9.84053 -9.66584 -9.33232 -9.09129 -8.76596 -8.63244 -8.54375 -6.55042 -5.95448 -3.54611 0.40971 1.25484 1.41012 1.69947 2.60607 3.28075 3.33077 3.34760 3.37236 3.40662 3.59796 4.07565 4.31231 4.36046 4.51847 4.72837 4.76390 4.92371 4.92673 4.99626 5.15359 5.23716 5.26387 5.28989 5.38546 5.59765 5.68565 5.84702 5.88285 5.98625 6.03556 6.18879 6.19839 6.24133 6.27170 6.33156 6.43672 6.48283 6.57947 6.71998 6.73916 6.91023 7.02245 7.21930 7.41278 7.73379 7.75155 7.94127 8.39154 8.42308 9.04075 9.64204 10.22510 11.06234 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.002736 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.362690 B =10231.437642 C =10441.452267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.021 3.979 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.268 4.268 8 H 0.065 0.935 9 N -0.545 5.545 10 C 0.141 3.859 11 C 0.100 3.900 12 N -0.709 5.709 13 C 0.585 3.415 14 O -0.530 6.530 15 C -0.237 4.237 16 C 0.028 3.972 17 N -0.364 5.364 18 O 0.109 5.891 19 C 0.079 3.921 20 C -0.037 4.037 21 C -0.041 4.041 22 C -0.123 4.123 23 C -0.098 4.098 24 C -0.130 4.130 25 C -0.086 4.086 26 C 0.122 3.878 27 C -0.202 4.202 28 C -0.217 4.217 29 H 0.258 0.742 30 H 0.033 0.967 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.397 0.603 35 H 0.202 0.798 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 -7.075 16.797 18.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.181 4.181 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.397 4.397 8 H 0.083 0.917 9 N -0.262 5.262 10 C 0.014 3.986 11 C -0.025 4.025 12 N -0.359 5.359 13 C 0.370 3.630 14 O -0.409 6.409 15 C -0.245 4.245 16 C -0.152 4.152 17 N -0.067 5.067 18 O 0.047 5.953 19 C 0.013 3.987 20 C -0.038 4.038 21 C -0.060 4.060 22 C -0.141 4.141 23 C -0.117 4.117 24 C -0.148 4.148 25 C -0.104 4.104 26 C 0.013 3.987 27 C -0.241 4.241 28 C -0.258 4.258 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.231 0.769 35 H 0.219 0.781 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.324 -6.965 17.551 18.886 hybrid contribution 0.391 0.916 -1.005 1.415 sum 0.715 -6.049 16.546 17.632 Atomic orbital electron populations 1.69873 1.05593 1.26395 1.51020 1.25304 0.95157 0.98845 0.98751 0.86419 0.79240 0.82906 0.78564 1.20510 1.21481 1.20563 1.18969 0.93588 0.84304 1.42848 0.91737 1.43153 1.50753 1.03749 1.28501 1.21045 0.90973 1.03019 0.83554 1.22437 0.93387 1.01295 0.85411 1.45916 1.12765 1.70731 1.06463 1.16765 0.86649 0.77767 0.81802 1.90827 1.15892 1.49328 1.84808 1.21687 0.94413 1.14170 0.94207 1.25111 0.93284 1.00755 0.96027 1.73535 1.11196 1.19235 1.02752 1.84882 1.11013 1.65900 1.33547 1.23098 0.87948 0.97620 0.90038 1.17490 0.87466 0.99577 0.99265 1.21168 0.91463 0.97195 0.96133 1.21088 0.96922 0.99023 0.97034 1.21349 0.98982 0.94762 0.96566 1.21008 0.92640 1.00276 1.00863 1.21218 0.97958 0.96617 0.94631 1.21207 0.99705 0.90292 0.87463 1.23088 0.91777 1.01511 1.07703 1.23297 0.98957 1.01383 1.02113 0.93150 0.94892 0.88192 0.91282 0.92778 0.76912 0.78133 0.85232 0.85246 0.85684 0.85469 0.85484 0.89306 0.88650 0.90824 0.91244 0.88862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.79 11.50 55.49 0.64 -23.15 16 2 C 0.02 0.54 4.99 -17.43 -0.09 0.45 16 3 Si 0.90 20.71 29.60 -169.99 -5.03 15.68 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.27 -6.86 8.53 -15.06 -0.13 -6.99 16 8 H 0.07 1.68 6.49 -52.49 -0.34 1.34 16 9 N -0.55 -12.71 2.76 -165.67 -0.46 -13.17 16 10 C 0.14 2.96 5.45 -4.04 -0.02 2.94 16 11 C 0.10 1.88 6.00 -4.04 -0.02 1.86 16 12 N -0.71 -11.07 5.55 -61.49 -0.34 -11.41 16 13 C 0.59 9.43 7.74 -12.66 -0.10 9.34 16 14 O -0.53 -9.98 13.94 5.24 0.07 -9.91 16 15 C -0.24 -3.27 6.32 -104.12 -0.66 -3.92 16 16 C 0.03 0.33 11.69 -16.75 -0.20 0.13 16 17 N -0.36 -4.70 11.98 30.84 0.37 -4.33 16 18 O 0.11 1.39 11.17 16.72 0.19 1.57 16 19 C 0.08 1.04 6.98 -35.23 -0.25 0.79 16 20 C -0.04 -0.46 5.46 -105.00 -0.57 -1.03 16 21 C -0.04 -0.53 7.86 -39.15 -0.31 -0.83 16 22 C -0.12 -1.32 10.03 -39.64 -0.40 -1.71 16 23 C -0.10 -0.89 10.04 -39.48 -0.40 -1.29 16 24 C -0.13 -1.16 10.03 -39.64 -0.40 -1.55 16 25 C -0.09 -0.89 9.79 -39.15 -0.38 -1.27 16 26 C 0.12 2.53 6.60 -67.93 -0.45 2.08 16 27 C -0.20 -3.90 9.85 -26.69 -0.26 -4.16 16 28 C -0.22 -4.32 10.20 -26.69 -0.27 -4.60 16 29 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 30 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 31 H 0.10 2.35 5.61 -51.93 -0.29 2.06 16 32 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.05 1.05 8.14 -51.92 -0.42 0.62 16 34 H 0.40 5.18 7.72 -40.82 -0.32 4.86 16 35 H 0.20 1.72 7.77 -52.48 -0.41 1.31 16 36 H 0.13 1.79 7.33 -52.48 -0.38 1.41 16 37 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 42 H 0.10 2.00 6.39 -51.93 -0.33 1.67 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 384.18 15.07 5.79 5.79 Total: -1.00 -29.86 384.18 -9.53 -39.38 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.85 Total: 9.32 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -4.90 Total: -9.79 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.21 Total: -52.05 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.26 Total: -8.33 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.86 -9.53 -39.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713564017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.538 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds