Wall clock time and date at job start Sat Apr 11 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99850 * 2 1 4 4 H 1.48496 * 109.47263 * 239.99788 * 3 2 1 5 5 H 1.48499 * 109.47347 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47263 * 120.00071 * 3 2 1 7 7 C 1.38807 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00190 * 160.98530 * 7 2 1 9 9 N 1.36940 * 120.00206 * 340.98722 * 7 2 1 10 10 C 1.46505 * 119.99612 * 319.90292 * 9 7 2 11 11 C 1.52997 * 109.46971 * 270.00138 * 10 9 7 12 12 N 1.46504 * 109.46904 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99797 * 180.02562 * 12 11 10 14 14 O 1.21641 * 120.00400 * 359.97438 * 13 12 11 15 15 C 1.47103 * 119.99953 * 179.97438 * 13 12 11 16 16 C 1.42474 * 128.38214 * 5.02296 * 15 13 12 17 17 N 1.29874 * 106.40823 * 180.27523 * 16 15 13 18 18 O 1.20741 * 112.76214 * 359.74058 * 17 16 15 19 19 C 1.34231 * 111.94758 * 0.02562 * 18 17 16 20 20 C 1.47559 * 127.17835 * 180.02562 * 19 18 17 21 21 C 1.39706 * 120.15770 * 227.61383 * 20 19 18 22 22 C 1.37922 * 119.83790 * 179.97438 * 21 20 19 23 23 C 1.38381 * 120.16270 * 0.02562 * 22 21 20 24 24 C 1.38378 * 120.31536 * 359.97438 * 23 22 21 25 25 C 1.37925 * 120.15760 * 0.02562 * 24 23 22 26 26 C 1.46498 * 120.00237 * 139.90889 * 9 7 2 27 27 C 1.52995 * 117.49991 * 12.72100 * 26 9 7 28 28 C 1.53003 * 117.49408 * 304.05919 * 26 9 7 29 29 H 0.96997 * 120.00013 * 5.02979 * 1 2 3 30 30 H 1.09000 * 109.46657 * 150.00240 * 10 9 7 31 31 H 1.08993 * 109.47089 * 30.00051 * 10 9 7 32 32 H 1.08991 * 109.47375 * 60.00199 * 11 10 9 33 33 H 1.09007 * 109.47181 * 299.99951 * 11 10 9 34 34 H 0.96998 * 119.99997 * 359.97438 * 12 11 10 35 35 H 1.08008 * 126.79481 * 0.02562 * 16 15 13 36 36 H 1.08003 * 120.07985 * 359.97438 * 21 20 19 37 37 H 1.08003 * 119.92058 * 179.71784 * 22 21 20 38 38 H 1.07993 * 119.84444 * 179.97438 * 23 22 21 39 39 H 1.07994 * 119.92552 * 180.02562 * 24 23 22 40 40 H 1.08006 * 120.08334 * 180.02562 * 25 24 23 41 41 H 1.08997 * 115.55007 * 158.39472 * 26 9 7 42 42 H 1.09003 * 117.49922 * 359.97438 * 27 26 9 43 43 H 1.09002 * 117.49925 * 145.02625 * 27 26 9 44 44 H 1.09003 * 117.49785 * 214.97931 * 28 26 9 45 45 H 1.08996 * 117.50295 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0461 -1.2278 -0.3042 9 7 1.3816 -2.3555 0.3874 10 6 0.4583 -2.3404 1.5248 11 6 1.2309 -2.6322 2.8127 12 7 0.3075 -2.6177 3.9500 13 6 0.7681 -2.8507 5.1950 14 8 1.9504 -3.0734 5.3744 15 6 -0.1589 -2.8356 6.3370 16 6 -1.5765 -2.6935 6.3239 17 7 -1.9607 -2.7330 7.5639 18 8 -1.0416 -2.8780 8.3333 19 6 0.1375 -2.9593 7.6969 20 6 1.4694 -3.1372 8.3064 21 6 2.5352 -2.3237 7.9141 22 6 3.7773 -2.4954 8.4886 23 6 3.9693 -3.4710 9.4510 24 6 2.9182 -4.2805 9.8445 25 6 1.6707 -4.1201 9.2787 26 6 1.6325 -3.6046 -0.3359 27 6 2.8126 -3.6325 -1.3092 28 6 1.3788 -3.6102 -1.8448 29 1 -0.4850 0.8368 -0.0736 30 1 -0.3083 -3.1018 1.3805 31 1 -0.0124 -1.3601 1.5976 32 1 1.9975 -1.8709 2.9570 33 1 1.7017 -3.6127 2.7399 34 1 -0.6352 -2.4397 3.8071 35 1 -2.2065 -2.5724 5.4550 36 1 2.3869 -1.5621 7.1628 37 1 4.6033 -1.8703 8.1830 38 1 4.9441 -3.6013 9.8972 39 1 3.0751 -5.0396 10.5965 40 1 0.8510 -4.7523 9.5870 41 1 1.4125 -4.5191 0.2148 42 1 3.4022 -2.7214 -1.4116 43 1 3.3689 -4.5656 -1.3990 44 1 0.9924 -4.5286 -2.2868 45 1 1.0249 -2.6848 -2.2991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713564017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:58 Heat of formation + Delta-G solvation = 89.294992 kcal Electronic energy + Delta-G solvation = -28712.803382 eV Core-core repulsion = 24699.763159 eV Total energy + Delta-G solvation = -4013.040223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.09108 -40.69947 -39.91273 -38.80242 -36.33644 -35.27060 -34.86244 -34.12561 -32.70763 -31.91571 -30.82202 -29.41859 -26.69263 -25.58748 -24.67862 -23.58509 -23.29320 -22.91214 -22.34673 -21.67793 -21.41626 -19.56101 -18.83599 -18.49624 -17.92003 -17.26261 -17.21205 -17.00700 -16.34271 -16.27600 -16.09716 -15.77371 -15.64726 -15.35598 -14.75630 -14.47078 -14.41483 -14.30492 -14.25585 -13.83881 -13.77744 -13.28335 -12.87474 -12.81774 -12.67437 -12.52073 -12.30690 -12.15008 -12.10332 -11.92388 -11.71783 -11.67504 -11.37012 -11.25290 -10.98106 -10.90882 -10.52825 -10.09470 -9.88933 -9.58786 -8.42451 -7.89809 -5.52406 -0.55951 0.44344 0.50560 0.70691 1.42439 1.46213 1.51220 1.57606 2.09980 2.14136 2.46447 2.77441 3.10009 3.14519 3.37545 3.43074 3.46629 3.59156 3.89882 3.98892 4.07702 4.13311 4.26589 4.31934 4.37205 4.41402 4.49949 4.55416 4.58016 4.61823 4.70167 4.80648 4.90218 4.96297 5.04784 5.07039 5.21182 5.30973 5.40419 5.42735 5.47369 5.54209 5.56969 5.65148 5.75786 5.96507 6.44140 6.50722 6.94162 7.10532 7.15419 7.79070 8.31212 9.07323 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.002736 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.362690 B =10231.437642 C =10441.452267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.021 4.021 3 Si 0.950 3.050 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.271 4.271 8 H 0.055 0.945 9 N -0.563 5.563 10 C 0.149 3.851 11 C 0.124 3.876 12 N -0.701 5.701 13 C 0.589 3.411 14 O -0.561 6.561 15 C -0.260 4.260 16 C 0.043 3.957 17 N -0.376 5.376 18 O 0.107 5.893 19 C 0.090 3.910 20 C -0.062 4.062 21 C -0.064 4.064 22 C -0.135 4.135 23 C -0.093 4.093 24 C -0.125 4.125 25 C -0.089 4.089 26 C 0.104 3.896 27 C -0.190 4.190 28 C -0.212 4.212 29 H 0.255 0.745 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.411 0.589 35 H 0.232 0.768 36 H 0.106 0.894 37 H 0.140 0.860 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.145 0.855 41 H 0.115 0.885 42 H 0.072 0.928 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.146 -8.857 18.136 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.219 4.219 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.401 4.401 8 H 0.072 0.928 9 N -0.281 5.281 10 C 0.022 3.978 11 C -0.002 4.002 12 N -0.352 5.352 13 C 0.375 3.625 14 O -0.441 6.441 15 C -0.267 4.267 16 C -0.136 4.136 17 N -0.082 5.082 18 O 0.048 5.952 19 C 0.024 3.976 20 C -0.064 4.064 21 C -0.083 4.083 22 C -0.153 4.153 23 C -0.111 4.111 24 C -0.143 4.143 25 C -0.107 4.107 26 C -0.004 4.004 27 C -0.229 4.229 28 C -0.252 4.252 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.247 0.753 35 H 0.248 0.752 36 H 0.124 0.876 37 H 0.157 0.843 38 H 0.175 0.825 39 H 0.179 0.821 40 H 0.162 0.838 41 H 0.132 0.868 42 H 0.091 0.909 43 H 0.126 0.874 44 H 0.119 0.881 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.638 -8.758 18.906 20.845 hybrid contribution 0.359 1.404 -1.369 1.993 sum 0.997 -7.354 17.537 19.043 Atomic orbital electron populations 1.69973 1.06400 1.26534 1.52364 1.25825 0.95799 1.01064 0.99240 0.85627 0.78149 0.80127 0.78283 1.20212 1.21504 1.20815 1.19065 0.93374 0.85574 1.42111 0.92762 1.43355 1.50960 1.04091 1.29670 1.20908 0.91015 1.02109 0.83783 1.21894 0.92743 0.99920 0.85663 1.45693 1.13057 1.70801 1.05698 1.16978 0.86562 0.76787 0.82165 1.90808 1.17358 1.50651 1.85261 1.21452 0.95025 1.16567 0.93670 1.25528 0.92581 0.98945 0.96590 1.73529 1.11355 1.20205 1.03101 1.84884 1.10836 1.66047 1.33477 1.23340 0.88395 0.95882 0.90004 1.17678 0.87012 1.00937 1.00748 1.21116 0.92835 0.97619 0.96703 1.21323 0.96389 0.99980 0.97601 1.21749 1.00538 0.93436 0.95352 1.21449 0.91723 1.00402 1.00727 1.21517 0.99393 0.96031 0.93808 1.21516 1.00938 0.90069 0.87914 1.23085 0.91375 1.02115 1.06317 1.23208 0.99553 1.01105 1.01366 0.93542 0.93287 0.90673 0.94473 0.92941 0.75254 0.75169 0.87633 0.84256 0.82549 0.82084 0.83762 0.86762 0.90907 0.87403 0.88097 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.70 11.50 21.65 0.25 -49.45 16 2 C -0.02 -1.09 4.99 84.86 0.42 -0.67 16 3 Si 0.95 43.38 29.60 68.60 2.03 45.41 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.27 -14.17 8.53 84.03 0.72 -13.45 16 8 H 0.05 2.90 6.49 -2.91 -0.02 2.88 16 9 N -0.56 -26.42 2.76 -678.05 -1.87 -28.29 16 10 C 0.15 6.25 5.45 86.38 0.47 6.72 16 11 C 0.12 4.74 6.00 86.38 0.52 5.25 16 12 N -0.70 -21.93 5.55 -466.68 -2.59 -24.52 16 13 C 0.59 19.22 7.74 86.57 0.67 19.89 16 14 O -0.56 -21.72 13.94 -4.16 -0.06 -21.78 16 15 C -0.26 -7.12 6.32 -19.54 -0.12 -7.24 16 16 C 0.04 0.97 11.69 86.04 1.01 1.97 16 17 N -0.38 -9.34 11.98 -56.89 -0.68 -10.02 16 18 O 0.11 2.66 11.17 70.04 0.78 3.45 16 19 C 0.09 2.36 6.98 25.09 0.18 2.54 16 20 C -0.06 -1.56 5.46 -20.11 -0.11 -1.67 16 21 C -0.06 -1.69 7.86 22.55 0.18 -1.52 16 22 C -0.14 -2.84 10.03 22.23 0.22 -2.62 16 23 C -0.09 -1.47 10.04 22.34 0.22 -1.24 16 24 C -0.13 -1.88 10.03 22.23 0.22 -1.65 16 25 C -0.09 -1.70 9.79 22.55 0.22 -1.48 16 26 C 0.10 4.16 6.60 44.99 0.30 4.46 16 27 C -0.19 -7.08 9.85 30.62 0.30 -6.78 16 28 C -0.21 -8.19 10.20 30.62 0.31 -7.88 16 29 H 0.26 13.58 8.32 -92.71 -0.77 12.81 16 30 H 0.05 1.88 8.07 -2.39 -0.02 1.86 16 31 H 0.08 3.60 5.61 -2.39 -0.01 3.59 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.41 10.46 7.72 -92.71 -0.72 9.75 16 35 H 0.23 3.46 7.77 -2.91 -0.02 3.44 16 36 H 0.11 3.19 7.33 -2.91 -0.02 3.17 16 37 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 38 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 40 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 41 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 42 H 0.07 3.05 6.39 -2.39 -0.02 3.03 16 43 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 44 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 45 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -66.17 384.18 3.90 -62.28 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.31 Total: 28.29 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 5.73 Total: -5.36 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -4.90 Total: -112.29 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.72 Total: -18.33 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -66.17 3.90 -62.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713564017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.572 kcal (2) G-P(sol) polarization free energy of solvation -66.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds