Wall clock time and date at job start Sat Apr 11 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99684 * 2 1 4 4 H 1.48504 * 109.46873 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46729 * 299.99302 * 3 2 1 6 6 H 1.48496 * 109.47520 * 59.99350 * 3 2 1 7 7 C 1.38811 * 120.00419 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00602 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99786 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99845 * 179.97438 * 9 7 2 11 11 H 1.08990 * 109.47481 * 325.00509 * 10 9 7 12 12 C 1.53005 * 109.46947 * 204.99878 * 10 9 7 13 13 N 1.46502 * 109.46903 * 55.00783 * 12 10 9 14 14 C 1.34779 * 119.99736 * 179.97438 * 13 12 10 15 15 O 1.21640 * 119.99980 * 359.97438 * 14 13 12 16 16 C 1.47096 * 119.99683 * 179.97438 * 14 13 12 17 17 C 1.42477 * 128.38460 * 5.51978 * 16 14 13 18 18 N 1.29879 * 106.40740 * 180.26598 * 17 16 14 19 19 O 1.20741 * 112.76028 * 359.74575 * 18 17 16 20 20 C 1.34232 * 111.95195 * 359.97438 * 19 18 17 21 21 C 1.47559 * 127.17836 * 180.02562 * 20 19 18 22 22 C 1.39706 * 120.15685 * 229.45674 * 21 20 19 23 23 C 1.37918 * 119.83812 * 179.97438 * 22 21 20 24 24 C 1.38375 * 120.16026 * 359.97438 * 23 22 21 25 25 C 1.38377 * 120.31943 * 359.97438 * 24 23 22 26 26 C 1.37922 * 120.15543 * 0.02562 * 25 24 23 27 27 C 1.53001 * 109.46773 * 85.00756 * 10 9 7 28 28 C 1.53004 * 117.50082 * 8.74090 * 27 10 9 29 29 C 1.53001 * 117.49691 * 300.08300 * 27 10 9 30 30 H 0.97001 * 120.00047 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99889 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.47453 * 295.00065 * 12 10 9 33 33 H 1.09000 * 109.46548 * 175.00187 * 12 10 9 34 34 H 0.96995 * 119.99830 * 359.97438 * 13 12 10 35 35 H 1.08000 * 126.79737 * 0.02562 * 17 16 14 36 36 H 1.08006 * 120.07995 * 359.97438 * 22 21 20 37 37 H 1.08011 * 119.91831 * 179.72138 * 23 22 21 38 38 H 1.08001 * 119.84147 * 179.97438 * 24 23 22 39 39 H 1.07997 * 119.92550 * 180.02562 * 25 24 23 40 40 H 1.08004 * 120.07911 * 180.02562 * 26 25 24 41 41 H 1.09005 * 115.55019 * 154.41742 * 27 10 9 42 42 H 1.08998 * 117.49366 * 0.02562 * 28 27 10 43 43 H 1.08993 * 117.49727 * 145.02477 * 28 27 10 44 44 H 1.08996 * 117.50055 * 214.98237 * 29 27 10 45 45 H 1.09004 * 117.49658 * 0.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9689 -3.5505 -0.5888 12 6 1.1811 -4.7521 -0.6091 13 7 0.7346 -4.3355 -1.9408 14 6 -0.0544 -5.1478 -2.6717 15 8 -0.3953 -6.2270 -2.2258 16 6 -0.5031 -4.7292 -4.0085 17 6 -0.1303 -3.5668 -4.7431 18 7 -0.7818 -3.6175 -5.8656 19 8 -1.4806 -4.5980 -5.9562 20 6 -1.3956 -5.3772 -4.8665 21 6 -2.1022 -6.6494 -4.6227 22 6 -2.7866 -6.8532 -3.4218 23 6 -3.4453 -8.0446 -3.2011 24 6 -3.4300 -9.0366 -4.1656 25 6 -2.7551 -8.8414 -5.3578 26 6 -2.0920 -7.6550 -5.5924 27 6 2.4220 -4.0355 1.4376 28 6 1.8133 -3.1985 2.5645 29 6 3.2994 -3.0601 2.2248 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 0.3135 -4.9201 0.0290 33 1 1.7561 -5.6745 -0.6908 34 1 1.0068 -3.4751 -2.2964 35 1 0.5551 -2.7942 -4.4274 36 1 -2.7997 -6.0796 -2.6683 37 1 -3.9710 -8.2053 -2.2713 38 1 -3.9472 -9.9678 -3.9872 39 1 -2.7477 -9.6198 -6.1064 40 1 -1.5660 -7.5038 -6.5235 41 1 2.5633 -5.1006 1.6216 42 1 1.1534 -2.3783 2.2820 43 1 1.5545 -3.7128 3.4900 44 1 4.0176 -3.4833 2.9269 45 1 3.6171 -2.1483 1.7189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713879549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:03 Heat of formation + Delta-G solvation = 94.996472 kcal Electronic energy + Delta-G solvation = -29041.032582 eV Core-core repulsion = 25028.239594 eV Total energy + Delta-G solvation = -4012.792988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.98041 -39.51006 -39.02874 -37.63398 -34.59256 -34.02871 -33.32179 -33.09399 -31.11436 -30.93413 -29.77628 -28.25430 -25.13967 -23.78893 -23.57020 -22.78601 -22.39730 -21.59183 -21.17165 -20.27712 -19.19183 -18.40336 -17.72709 -17.46166 -17.00679 -16.29052 -15.74257 -15.38352 -15.05128 -14.87324 -14.74481 -14.58817 -14.36124 -13.84292 -13.66102 -13.50291 -13.38539 -13.04706 -12.94966 -12.92833 -12.13190 -11.77648 -11.46538 -11.36421 -11.30152 -11.20808 -10.94038 -10.90151 -10.56485 -10.54231 -10.13855 -9.99306 -9.87241 -9.72796 -9.51148 -9.22255 -9.07565 -9.04447 -8.77652 -8.62104 -7.13150 -5.89487 -3.20027 0.48958 1.27638 1.44369 1.84096 2.70569 3.33604 3.35303 3.41546 3.43740 3.44791 3.63134 4.23271 4.41078 4.44703 4.59208 4.63210 4.75847 4.79088 4.95189 5.07353 5.25338 5.30227 5.33046 5.40498 5.42974 5.51991 5.69360 5.71286 5.76998 5.80430 5.86930 5.92158 5.99455 6.02676 6.22801 6.29918 6.34532 6.35069 6.38856 6.59865 6.67259 6.74763 6.80891 6.95895 7.23612 7.60953 7.78636 8.07489 8.27329 8.41149 9.40094 9.93115 10.29238 11.31736 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.003010 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.825109 B = 9301.548040 C =10694.847356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.007 4.007 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.192 3.808 11 H 0.058 0.942 12 C 0.121 3.879 13 N -0.701 5.701 14 C 0.590 3.410 15 O -0.538 6.538 16 C -0.235 4.235 17 C 0.033 3.967 18 N -0.363 5.363 19 O 0.110 5.890 20 C 0.074 3.926 21 C -0.032 4.032 22 C -0.043 4.043 23 C -0.123 4.123 24 C -0.100 4.100 25 C -0.129 4.129 26 C -0.086 4.086 27 C -0.178 4.178 28 C -0.163 4.163 29 C -0.175 4.175 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.410 0.590 35 H 0.204 0.796 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.494 -15.824 -7.948 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.204 4.204 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.360 5.360 10 C 0.081 3.919 11 H 0.075 0.925 12 C -0.003 4.003 13 N -0.352 5.352 14 C 0.375 3.625 15 O -0.417 6.417 16 C -0.242 4.242 17 C -0.146 4.146 18 N -0.066 5.066 19 O 0.047 5.953 20 C 0.008 3.992 21 C -0.033 4.033 22 C -0.062 4.062 23 C -0.141 4.141 24 C -0.119 4.119 25 C -0.147 4.147 26 C -0.105 4.105 27 C -0.199 4.199 28 C -0.200 4.200 29 C -0.212 4.212 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.247 0.753 35 H 0.220 0.780 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.104 0.896 42 H 0.137 0.863 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.648 -15.602 -8.704 18.234 hybrid contribution 0.673 1.272 0.775 1.634 sum -2.976 -14.329 -7.930 16.645 Atomic orbital electron populations 1.69663 1.05013 1.25690 1.57054 1.24712 0.95409 0.97559 1.02684 0.86214 0.78873 0.84420 0.77225 1.20571 1.21926 1.21890 1.19197 0.90932 0.83740 1.43306 0.90986 1.42492 1.05848 0.99494 1.88140 1.19998 0.94080 0.86019 0.91826 0.92454 1.21627 0.98934 0.97568 0.82183 1.45777 1.50039 1.21485 1.17898 1.16711 0.78867 0.84291 0.82637 1.90805 1.57328 1.21919 1.71666 1.21580 1.05281 0.98190 0.99136 1.25184 1.00690 0.98749 0.89982 1.73542 1.07578 1.03980 1.21546 1.84888 1.49767 1.24383 1.36266 1.23070 0.96343 0.93379 0.86376 1.17487 1.00384 0.89066 0.96384 1.21153 0.92709 0.97809 0.94502 1.21066 1.00161 0.93251 0.99591 1.21328 0.98039 0.98877 0.93616 1.21002 0.98639 0.97215 0.97873 1.21220 0.98251 0.92952 0.98058 1.23057 1.06047 0.95368 0.95465 1.22913 0.96717 1.03501 0.96850 1.22852 0.93494 1.01865 1.03009 0.93464 0.77919 0.91386 0.91564 0.75326 0.77962 0.85298 0.85327 0.85756 0.85519 0.85497 0.89597 0.86340 0.91283 0.91008 0.87928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.65 13.06 55.49 0.72 -24.92 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.90 20.98 29.55 -169.99 -5.02 15.95 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -5.80 8.16 -15.06 -0.12 -5.92 16 8 H 0.07 1.73 6.91 -52.49 -0.36 1.36 16 9 N -0.72 -15.26 3.08 -53.43 -0.16 -15.42 16 10 C 0.19 3.33 2.86 -67.93 -0.19 3.14 16 11 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 12 C 0.12 1.92 5.21 -4.04 -0.02 1.90 16 13 N -0.70 -11.01 5.38 -61.49 -0.33 -11.34 16 14 C 0.59 9.52 7.77 -12.67 -0.10 9.42 16 15 O -0.54 -9.61 14.15 5.24 0.07 -9.53 16 16 C -0.23 -3.49 6.32 -104.12 -0.66 -4.14 16 17 C 0.03 0.47 11.69 -16.75 -0.20 0.27 16 18 N -0.36 -5.35 11.98 30.84 0.37 -4.98 16 19 O 0.11 1.53 11.17 16.71 0.19 1.72 16 20 C 0.07 1.04 6.97 -35.23 -0.25 0.79 16 21 C -0.03 -0.41 5.42 -105.00 -0.57 -0.98 16 22 C -0.04 -0.55 7.92 -39.15 -0.31 -0.86 16 23 C -0.12 -1.28 10.03 -39.65 -0.40 -1.68 16 24 C -0.10 -0.90 10.04 -39.48 -0.40 -1.29 16 25 C -0.13 -1.15 10.03 -39.65 -0.40 -1.55 16 26 C -0.09 -0.91 9.79 -39.15 -0.38 -1.29 16 27 C -0.18 -2.96 5.71 -90.62 -0.52 -3.48 16 28 C -0.16 -2.94 9.74 -26.69 -0.26 -3.20 16 29 C -0.18 -3.02 9.87 -26.69 -0.26 -3.28 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.39 9.08 7.80 -40.82 -0.32 8.77 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.41 6.47 7.39 -40.82 -0.30 6.16 16 35 H 0.20 2.45 7.77 -52.49 -0.41 2.05 16 36 H 0.13 1.77 7.54 -52.48 -0.40 1.37 16 37 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 41 H 0.09 1.27 8.11 -51.93 -0.42 0.85 16 42 H 0.12 2.58 6.68 -51.93 -0.35 2.23 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.10 1.99 6.22 -51.93 -0.32 1.66 16 LS Contribution 382.34 15.07 5.76 5.76 Total: -1.00 -28.45 382.34 -9.34 -37.79 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -5.81 Total: 17.41 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -5.13 Total: -12.43 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.60 Total: -56.66 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.26 Total: -7.82 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.45 -9.34 -37.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713879549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.785 kcal (2) G-P(sol) polarization free energy of solvation -28.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds