Wall clock time and date at job start Sat Apr 11 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 119.99598 * 2 1 4 4 H 1.48506 * 109.47096 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47344 * 300.00065 * 3 2 1 6 6 H 1.48500 * 109.47343 * 59.99682 * 3 2 1 7 7 C 1.38807 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00008 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99922 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00026 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47024 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46969 * 294.99200 * 11 10 9 13 13 N 1.46490 * 109.47673 * 54.99574 * 11 10 9 14 14 C 1.34777 * 120.00304 * 205.00304 * 13 11 10 15 15 O 1.21650 * 119.99714 * 359.97438 * 14 13 11 16 16 C 1.47138 * 120.00321 * 179.97438 * 14 13 11 17 17 N 1.35890 * 126.61651 * 5.42939 * 16 14 13 18 18 C 1.29932 * 108.73853 * 180.29453 * 17 16 14 19 19 O 1.34043 * 109.77997 * 359.73081 * 18 17 16 20 20 C 1.34763 * 108.23914 * 359.97438 * 19 18 17 21 21 C 1.47585 * 126.76302 * 180.02562 * 20 19 18 22 22 C 1.39689 * 120.15541 * 231.17399 * 21 20 19 23 23 C 1.37923 * 119.84015 * 180.02562 * 22 21 20 24 24 C 1.38374 * 120.15636 * 0.02562 * 23 22 21 25 25 C 1.38373 * 120.31997 * 0.02562 * 24 23 22 26 26 C 1.37929 * 120.15160 * 359.97438 * 25 24 23 27 27 C 1.53010 * 109.47093 * 174.99936 * 11 10 9 28 28 C 1.53001 * 117.49725 * 248.74313 * 27 11 10 29 29 C 1.53000 * 117.49747 * 180.08496 * 27 11 10 30 30 H 0.96998 * 120.00702 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99776 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47502 * 59.99091 * 10 9 7 33 33 H 1.09006 * 109.46769 * 299.99282 * 10 9 7 34 34 H 0.97008 * 120.00186 * 24.99928 * 13 11 10 35 35 H 1.08001 * 125.10633 * 179.71454 * 18 17 16 36 36 H 1.08007 * 120.07720 * 0.26346 * 22 21 20 37 37 H 1.07999 * 119.91922 * 179.97438 * 23 22 21 38 38 H 1.08004 * 119.83686 * 179.97438 * 24 23 22 39 39 H 1.07999 * 119.92662 * 179.97438 * 25 24 23 40 40 H 1.08007 * 120.07960 * 179.97438 * 26 25 24 41 41 H 1.09003 * 115.54833 * 34.41073 * 27 11 10 42 42 H 1.09002 * 117.49515 * 359.97438 * 28 27 11 43 43 H 1.08999 * 117.49674 * 145.01670 * 28 27 11 44 44 H 1.08998 * 117.49612 * 214.97577 * 29 27 11 45 45 H 1.08997 * 117.50022 * 359.97226 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8912 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0640 -4.8196 0.0008 12 1 0.4968 -4.8134 0.9316 13 7 0.1458 -4.6763 -1.1316 14 6 -1.0787 -5.2372 -1.0814 15 8 -1.4212 -5.8628 -0.0960 16 6 -2.0012 -5.0928 -2.2186 17 7 -1.7255 -4.5164 -3.4179 18 6 -2.7894 -4.5712 -4.1618 19 8 -3.7797 -5.1785 -3.4931 20 6 -3.3175 -5.5214 -2.2745 21 6 -4.0677 -6.2115 -1.2072 22 6 -4.0932 -5.6843 0.0861 23 6 -4.7959 -6.3349 1.0787 24 6 -5.4743 -7.5073 0.7959 25 6 -5.4526 -8.0359 -0.4828 26 6 -4.7539 -7.3960 -1.4852 27 6 1.8251 -6.1412 -0.1238 28 6 1.6685 -6.9264 -1.4276 29 6 1.0023 -7.4309 -0.1451 30 1 -0.4851 0.8400 -0.0004 31 1 0.3557 -2.3880 0.0005 32 1 2.6843 -3.7140 0.8920 33 1 2.6855 -3.7148 -0.8879 34 1 0.4190 -4.1777 -1.9176 35 1 -2.8645 -4.1851 -5.1676 36 1 -3.5670 -4.7674 0.3074 37 1 -4.8161 -5.9287 2.0792 38 1 -6.0226 -8.0127 1.5771 39 1 -5.9839 -8.9516 -0.6963 40 1 -4.7374 -7.8098 -2.4827 41 1 2.7970 -6.1722 0.3688 42 1 1.0229 -6.5017 -2.1964 43 1 2.5372 -7.4743 -1.7925 44 1 1.4331 -8.3106 0.3331 45 1 -0.0811 -7.3380 -0.0699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716612840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:23 Heat of formation + Delta-G solvation = 61.516010 kcal Electronic energy + Delta-G solvation = -29701.370474 eV Core-core repulsion = 25687.125664 eV Total energy + Delta-G solvation = -4014.244810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.34020 -39.84509 -39.03472 -37.05971 -34.94273 -34.79480 -33.17830 -32.52493 -31.13470 -31.02866 -29.07238 -28.03183 -24.62912 -23.87413 -23.44688 -22.52875 -22.18762 -21.59794 -21.38222 -20.45032 -19.57165 -18.35385 -17.32673 -17.07943 -16.78671 -16.18984 -15.87337 -15.84419 -15.36577 -14.93100 -14.64596 -14.27229 -14.21836 -13.74951 -13.57914 -13.45706 -13.37140 -13.19643 -12.83837 -12.78390 -12.06632 -11.61704 -11.58682 -11.43600 -11.32239 -11.23608 -11.11860 -10.87246 -10.81916 -10.81141 -10.22030 -10.07906 -9.85235 -9.76116 -9.53916 -9.50908 -9.00728 -8.90097 -8.60745 -8.42057 -6.93537 -5.75812 -3.05412 0.57992 1.34051 1.47712 2.08355 2.47216 3.35109 3.43750 3.49212 3.50087 3.51519 3.69636 4.03006 4.12090 4.45898 4.57854 4.78776 4.82185 4.90557 4.98802 5.01540 5.23103 5.25208 5.26839 5.34824 5.42452 5.56817 5.58652 5.60000 5.77594 5.79679 5.90438 5.94092 6.00244 6.05790 6.08842 6.27663 6.29381 6.37229 6.37716 6.42417 6.51169 6.56254 6.71709 6.81737 6.94288 7.38865 7.70673 7.90765 8.41556 8.48128 9.53680 10.09586 10.44960 11.46581 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010621 B = 0.003467 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.664167 B = 8073.166979 C = 8783.441073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.093 0.907 13 N -0.688 5.688 14 C 0.600 3.400 15 O -0.530 6.530 16 C -0.046 4.046 17 N -0.453 5.453 18 C 0.175 3.825 19 O -0.194 6.194 20 C 0.071 3.929 21 C -0.026 4.026 22 C -0.041 4.041 23 C -0.121 4.121 24 C -0.102 4.102 25 C -0.130 4.130 26 C -0.090 4.090 27 C -0.160 4.160 28 C -0.178 4.178 29 C -0.186 4.186 30 H 0.254 0.746 31 H 0.386 0.614 32 H 0.035 0.965 33 H 0.027 0.973 34 H 0.413 0.587 35 H 0.256 0.744 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.582 -17.579 -5.269 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.064 3.936 12 H 0.111 0.889 13 N -0.338 5.338 14 C 0.385 3.615 15 O -0.408 6.408 16 C -0.168 4.168 17 N -0.181 5.181 18 C -0.052 4.052 19 O -0.080 6.080 20 C 0.014 3.986 21 C -0.026 4.026 22 C -0.060 4.060 23 C -0.139 4.139 24 C -0.120 4.120 25 C -0.148 4.148 26 C -0.108 4.108 27 C -0.180 4.180 28 C -0.215 4.215 29 C -0.223 4.223 30 H 0.064 0.936 31 H 0.220 0.780 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.250 0.750 35 H 0.271 0.729 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.128 0.872 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.085 -17.609 -4.760 20.379 hybrid contribution -0.131 1.099 -0.531 1.227 sum -9.216 -16.511 -5.291 19.635 Atomic orbital electron populations 1.69679 1.05105 1.25479 1.57609 1.24737 0.95486 0.97668 1.02913 0.86125 0.78791 0.84161 0.77139 1.20551 1.21909 1.21913 1.19250 0.91047 0.84027 1.42803 0.91074 1.42343 1.05987 0.99723 1.89532 1.20913 0.93022 0.85052 0.99017 1.20812 0.90168 0.93004 0.89640 0.88906 1.45797 1.13683 1.53285 1.21016 1.16578 0.81118 0.79320 0.84444 1.90766 1.76042 1.42013 1.31946 1.22078 0.93856 1.05799 0.95055 1.70708 1.27886 1.17317 1.02211 1.28024 0.80289 0.97062 0.99853 1.84461 1.41433 1.58318 1.23793 1.21786 0.92708 0.99732 0.84328 1.17441 0.99777 0.95313 0.90112 1.21162 0.94676 0.99439 0.90681 1.21068 0.97685 0.95800 0.99327 1.21307 0.98346 0.95687 0.96662 1.20974 1.00413 1.00340 0.93112 1.21173 0.95942 0.94092 0.99593 1.22693 1.00793 0.92392 1.02075 1.22899 1.02947 1.03980 0.91696 1.23332 1.01533 0.96687 1.00757 0.93615 0.78030 0.94697 0.95544 0.75034 0.72882 0.85233 0.85289 0.85816 0.85680 0.85898 0.87194 0.89000 0.89535 0.89798 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.39 5.43 -59.91 -0.33 -18.71 16 10 C 0.15 2.95 5.80 -4.04 -0.02 2.92 16 11 C 0.17 2.92 2.59 -67.93 -0.18 2.75 16 12 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 13 N -0.69 -11.97 3.05 -54.97 -0.17 -12.14 16 14 C 0.60 10.49 6.59 -12.65 -0.08 10.40 16 15 O -0.53 -9.64 10.85 5.23 0.06 -9.58 16 16 C -0.05 -0.76 7.04 -82.35 -0.58 -1.34 16 17 N -0.45 -6.84 11.05 -11.04 -0.12 -6.96 16 18 C 0.18 1.98 13.16 51.96 0.68 2.66 16 19 O -0.19 -2.44 10.75 5.13 0.06 -2.39 16 20 C 0.07 1.04 6.84 -35.66 -0.24 0.80 16 21 C -0.03 -0.36 5.27 -105.00 -0.55 -0.91 16 22 C -0.04 -0.58 7.72 -39.15 -0.30 -0.88 16 23 C -0.12 -1.41 10.03 -39.65 -0.40 -1.81 16 24 C -0.10 -1.01 10.04 -39.48 -0.40 -1.41 16 25 C -0.13 -1.28 10.03 -39.64 -0.40 -1.67 16 26 C -0.09 -1.03 9.79 -39.15 -0.38 -1.41 16 27 C -0.16 -2.36 5.71 -90.61 -0.52 -2.87 16 28 C -0.18 -2.47 9.74 -26.69 -0.26 -2.73 16 29 C -0.19 -2.68 9.82 -26.69 -0.26 -2.94 16 30 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.39 10.40 7.33 -40.82 -0.30 10.10 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.41 7.49 8.34 -40.82 -0.34 7.15 16 35 H 0.26 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.13 2.02 7.61 -52.48 -0.40 1.62 16 37 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 38 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 41 H 0.11 1.48 8.11 -51.93 -0.42 1.06 16 42 H 0.09 1.38 6.67 -51.93 -0.35 1.03 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.12 1.92 5.01 -51.93 -0.26 1.66 16 LS Contribution 380.38 15.07 5.73 5.73 Total: -1.00 -33.05 380.38 -9.02 -42.07 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: -5.81 Total: 17.80 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -4.14 Total: -5.73 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: 0.11 Total: -65.34 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.11 Total: -11.97 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.05 -9.02 -42.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716612840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.583 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds