Wall clock time and date at job start Sat Apr 11 2020 06:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 119.99598 * 2 1 4 4 H 1.48506 * 109.47096 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47344 * 300.00065 * 3 2 1 6 6 H 1.48500 * 109.47343 * 59.99682 * 3 2 1 7 7 C 1.38807 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00008 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99922 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00026 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47024 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46969 * 294.99200 * 11 10 9 13 13 N 1.46490 * 109.47673 * 54.99574 * 11 10 9 14 14 C 1.34777 * 120.00304 * 205.00304 * 13 11 10 15 15 O 1.21650 * 119.99714 * 359.97438 * 14 13 11 16 16 C 1.47138 * 120.00321 * 179.97438 * 14 13 11 17 17 N 1.35890 * 126.61651 * 5.42939 * 16 14 13 18 18 C 1.29932 * 108.73853 * 180.29453 * 17 16 14 19 19 O 1.34043 * 109.77997 * 359.73081 * 18 17 16 20 20 C 1.34763 * 108.23914 * 359.97438 * 19 18 17 21 21 C 1.47585 * 126.76302 * 180.02562 * 20 19 18 22 22 C 1.39689 * 120.15541 * 231.17399 * 21 20 19 23 23 C 1.37923 * 119.84015 * 180.02562 * 22 21 20 24 24 C 1.38374 * 120.15636 * 0.02562 * 23 22 21 25 25 C 1.38373 * 120.31997 * 0.02562 * 24 23 22 26 26 C 1.37929 * 120.15160 * 359.97438 * 25 24 23 27 27 C 1.53010 * 109.47093 * 174.99936 * 11 10 9 28 28 C 1.53001 * 117.49725 * 248.74313 * 27 11 10 29 29 C 1.53000 * 117.49747 * 180.08496 * 27 11 10 30 30 H 0.96998 * 120.00702 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99776 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47502 * 59.99091 * 10 9 7 33 33 H 1.09006 * 109.46769 * 299.99282 * 10 9 7 34 34 H 0.97008 * 120.00186 * 24.99928 * 13 11 10 35 35 H 1.08001 * 125.10633 * 179.71454 * 18 17 16 36 36 H 1.08007 * 120.07720 * 0.26346 * 22 21 20 37 37 H 1.07999 * 119.91922 * 179.97438 * 23 22 21 38 38 H 1.08004 * 119.83686 * 179.97438 * 24 23 22 39 39 H 1.07999 * 119.92662 * 179.97438 * 25 24 23 40 40 H 1.08007 * 120.07960 * 179.97438 * 26 25 24 41 41 H 1.09003 * 115.54833 * 34.41073 * 27 11 10 42 42 H 1.09002 * 117.49515 * 359.97438 * 28 27 11 43 43 H 1.08999 * 117.49674 * 145.01670 * 28 27 11 44 44 H 1.08998 * 117.49612 * 214.97577 * 29 27 11 45 45 H 1.08997 * 117.50022 * 359.97226 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8912 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0640 -4.8196 0.0008 12 1 0.4968 -4.8134 0.9316 13 7 0.1458 -4.6763 -1.1316 14 6 -1.0787 -5.2372 -1.0814 15 8 -1.4212 -5.8628 -0.0960 16 6 -2.0012 -5.0928 -2.2186 17 7 -1.7255 -4.5164 -3.4179 18 6 -2.7894 -4.5712 -4.1618 19 8 -3.7797 -5.1785 -3.4931 20 6 -3.3175 -5.5214 -2.2745 21 6 -4.0677 -6.2115 -1.2072 22 6 -4.0932 -5.6843 0.0861 23 6 -4.7959 -6.3349 1.0787 24 6 -5.4743 -7.5073 0.7959 25 6 -5.4526 -8.0359 -0.4828 26 6 -4.7539 -7.3960 -1.4852 27 6 1.8251 -6.1412 -0.1238 28 6 1.6685 -6.9264 -1.4276 29 6 1.0023 -7.4309 -0.1451 30 1 -0.4851 0.8400 -0.0004 31 1 0.3557 -2.3880 0.0005 32 1 2.6843 -3.7140 0.8920 33 1 2.6855 -3.7148 -0.8879 34 1 0.4190 -4.1777 -1.9176 35 1 -2.8645 -4.1851 -5.1676 36 1 -3.5670 -4.7674 0.3074 37 1 -4.8161 -5.9287 2.0792 38 1 -6.0226 -8.0127 1.5771 39 1 -5.9839 -8.9516 -0.6963 40 1 -4.7374 -7.8098 -2.4827 41 1 2.7970 -6.1722 0.3688 42 1 1.0229 -6.5017 -2.1964 43 1 2.5372 -7.4743 -1.7925 44 1 1.4331 -8.3106 0.3331 45 1 -0.0811 -7.3380 -0.0699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716612840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:22 Heat of formation + Delta-G solvation = 39.220167 kcal Electronic energy + Delta-G solvation = -29702.337294 eV Core-core repulsion = 25687.125664 eV Total energy + Delta-G solvation = -4015.211630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.38106 -41.17571 -39.93239 -38.37404 -36.57509 -35.97726 -34.75391 -33.48887 -33.02047 -31.92249 -30.34068 -29.49032 -26.20764 -25.40642 -24.39088 -23.52600 -23.44559 -22.99841 -22.53664 -21.59082 -20.90539 -19.61350 -19.07833 -18.21347 -17.87740 -17.33620 -17.18622 -17.04365 -16.64838 -16.27581 -15.86932 -15.58014 -15.28966 -15.14067 -15.09064 -14.87571 -14.55889 -14.44948 -14.35140 -13.70327 -13.64728 -13.15579 -12.88741 -12.76157 -12.69499 -12.54676 -12.44637 -12.28255 -12.11393 -12.05766 -11.86988 -11.84791 -11.41481 -11.09957 -10.99985 -10.82780 -10.54289 -10.01923 -9.86317 -9.42967 -9.02866 -7.95053 -5.25143 -0.45202 0.43635 0.49983 1.02792 1.46724 1.46979 1.47858 1.58001 2.08058 2.23975 2.54763 2.78825 2.92682 3.07785 3.39418 3.45988 3.58715 3.73103 3.94900 3.96244 4.01218 4.05870 4.15939 4.19680 4.31159 4.37503 4.41129 4.47849 4.51321 4.59931 4.65016 4.80575 4.85536 4.90202 5.02842 5.06023 5.08723 5.12513 5.23820 5.37156 5.42355 5.47841 5.48703 5.52662 5.54187 5.96841 6.24865 6.28161 6.57254 7.12084 7.32065 8.04834 8.29043 9.28315 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010621 B = 0.003467 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.664167 B = 8073.166979 C = 8783.441073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.296 1.296 7 C -0.242 4.242 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.151 3.849 11 C 0.178 3.822 12 H 0.069 0.931 13 N -0.689 5.689 14 C 0.596 3.404 15 O -0.543 6.543 16 C -0.079 4.079 17 N -0.491 5.491 18 C 0.199 3.801 19 O -0.190 6.190 20 C 0.072 3.928 21 C -0.050 4.050 22 C -0.067 4.067 23 C -0.131 4.131 24 C -0.095 4.095 25 C -0.123 4.123 26 C -0.093 4.093 27 C -0.163 4.163 28 C -0.167 4.167 29 C -0.183 4.183 30 H 0.249 0.751 31 H 0.372 0.628 32 H 0.044 0.956 33 H 0.036 0.964 34 H 0.408 0.592 35 H 0.308 0.692 36 H 0.096 0.904 37 H 0.139 0.861 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.541 -19.420 -6.160 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.223 1.223 7 C -0.374 4.374 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.024 3.976 11 C 0.073 3.927 12 H 0.087 0.913 13 N -0.338 5.338 14 C 0.383 3.617 15 O -0.422 6.422 16 C -0.199 4.199 17 N -0.219 5.219 18 C -0.029 4.029 19 O -0.077 6.077 20 C 0.015 3.985 21 C -0.050 4.050 22 C -0.086 4.086 23 C -0.149 4.149 24 C -0.113 4.113 25 C -0.141 4.141 26 C -0.111 4.111 27 C -0.183 4.183 28 C -0.204 4.204 29 C -0.220 4.220 30 H 0.058 0.942 31 H 0.204 0.796 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.244 0.756 35 H 0.323 0.677 36 H 0.115 0.885 37 H 0.157 0.843 38 H 0.176 0.824 39 H 0.180 0.820 40 H 0.158 0.842 41 H 0.148 0.852 42 H 0.095 0.905 43 H 0.129 0.871 44 H 0.124 0.876 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.996 -19.484 -5.642 22.190 hybrid contribution -0.209 1.596 -0.275 1.633 sum -9.205 -17.889 -5.917 20.970 Atomic orbital electron populations 1.69853 1.06758 1.25846 1.59554 1.25573 0.96302 1.01150 1.03643 0.85055 0.78339 0.79728 0.76499 1.18776 1.22129 1.22287 1.19677 0.91609 0.85053 1.41068 0.90195 1.42523 1.05574 1.01008 1.89487 1.21036 0.93328 0.83802 0.99447 1.20600 0.89569 0.93695 0.88802 0.91323 1.45749 1.13936 1.53495 1.20639 1.16803 0.81149 0.78970 0.84827 1.90742 1.76236 1.42618 1.32635 1.21984 0.94539 1.07892 0.95475 1.70669 1.29834 1.18962 1.02409 1.29232 0.78772 0.94250 1.00631 1.84491 1.41603 1.58398 1.23160 1.21996 0.92281 0.99191 0.85059 1.17617 1.01072 0.96661 0.89696 1.21040 0.96270 0.99254 0.92009 1.21288 0.97713 0.96677 0.99239 1.21709 0.97238 0.94547 0.97793 1.21431 0.99255 1.00991 0.92396 1.21450 0.95469 0.93166 1.01048 1.22633 1.01270 0.90946 1.03443 1.22919 1.03274 1.03266 0.90915 1.23271 1.00246 0.97096 1.01398 0.94208 0.79574 0.93846 0.94605 0.75593 0.67711 0.88526 0.84343 0.82423 0.82046 0.84221 0.85231 0.90451 0.87079 0.87567 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.67 13.06 21.65 0.28 -60.39 16 2 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 3 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 7 C -0.24 -13.62 9.99 84.03 0.84 -12.78 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 9 N -0.74 -38.38 5.43 -343.47 -1.87 -40.25 16 10 C 0.15 6.06 5.80 86.38 0.50 6.56 16 11 C 0.18 6.39 2.59 45.00 0.12 6.51 16 12 H 0.07 2.79 7.58 -2.38 -0.02 2.77 16 13 N -0.69 -25.32 3.05 -446.06 -1.36 -26.68 16 14 C 0.60 22.30 6.59 86.58 0.57 22.87 16 15 O -0.54 -21.28 10.85 -4.19 -0.05 -21.33 16 16 C -0.08 -2.72 7.04 40.92 0.29 -2.43 16 17 N -0.49 -15.16 11.05 -303.75 -3.36 -18.52 16 18 C 0.20 4.29 13.16 130.52 1.72 6.00 16 19 O -0.19 -4.72 10.75 -4.56 -0.05 -4.77 16 20 C 0.07 2.19 6.84 24.81 0.17 2.36 16 21 C -0.05 -1.42 5.27 -20.11 -0.11 -1.53 16 22 C -0.07 -2.03 7.72 22.55 0.17 -1.86 16 23 C -0.13 -3.11 10.03 22.23 0.22 -2.89 16 24 C -0.10 -1.69 10.04 22.33 0.22 -1.47 16 25 C -0.12 -2.09 10.03 22.23 0.22 -1.87 16 26 C -0.09 -2.03 9.79 22.55 0.22 -1.81 16 27 C -0.16 -4.72 5.71 -10.79 -0.06 -4.78 16 28 C -0.17 -4.46 9.74 30.62 0.30 -4.16 16 29 C -0.18 -5.16 9.82 30.62 0.30 -4.86 16 30 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.37 21.06 7.33 -92.71 -0.68 20.38 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.41 15.64 8.34 -92.70 -0.77 14.86 16 35 H 0.31 2.55 8.06 -2.91 -0.02 2.52 16 36 H 0.10 3.44 7.61 -2.91 -0.02 3.42 16 37 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 39 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 40 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 41 H 0.13 3.24 8.11 -2.39 -0.02 3.22 16 42 H 0.08 2.33 6.67 -2.39 -0.02 2.31 16 43 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.09 3.13 5.01 -2.39 -0.01 3.11 16 Total: -1.00 -74.88 380.38 1.39 -73.48 By element: Atomic # 1 Polarization: 50.15 SS G_CDS: -0.41 Total: 49.74 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 6.17 Total: 0.01 kcal Atomic # 7 Polarization: -139.54 SS G_CDS: -6.30 Total: -145.84 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.09 Total: -26.10 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -74.88 1.39 -73.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716612840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.705 kcal (2) G-P(sol) polarization free energy of solvation -74.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds