Wall clock time and date at job start Sat Apr 11 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00040 * 2 1 4 4 H 1.48504 * 109.47499 * 240.00172 * 3 2 1 5 5 H 1.48504 * 109.47175 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47276 * 120.00202 * 3 2 1 7 7 C 1.38818 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99740 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00242 * 359.97438 * 7 2 1 10 10 C 1.46491 * 120.00538 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47752 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.51517 * 305.10581 * 11 10 9 13 13 C 1.53294 * 109.51712 * 184.99638 * 11 10 9 14 14 N 1.47150 * 108.38574 * 187.77605 * 13 11 10 15 15 C 1.34783 * 120.98203 * 230.51423 * 14 13 11 16 16 O 1.21608 * 119.99457 * 355.17917 * 15 14 13 17 17 C 1.47432 * 120.00182 * 175.17286 * 15 14 13 18 18 C 1.38745 * 120.33023 * 52.53018 * 17 15 14 19 19 C 1.38860 * 120.73090 * 179.78134 * 18 17 15 20 20 C 1.36351 * 121.05195 * 0.50570 * 19 18 17 21 21 C 1.40438 * 120.08686 * 359.73998 * 20 19 18 22 22 C 1.40809 * 121.26071 * 180.02562 * 21 20 19 23 23 C 1.36634 * 118.15374 * 180.02562 * 22 21 20 24 24 C 1.39226 * 119.90614 * 359.97438 * 23 22 21 25 25 N 1.31231 * 121.70237 * 0.02562 * 24 23 22 26 26 C 1.33346 * 121.35098 * 359.95571 * 25 24 23 27 27 C 1.47141 * 118.03748 * 50.53634 * 14 13 11 28 28 C 1.53296 * 108.38659 * 309.46694 * 27 14 13 29 29 O 1.42959 * 109.22223 * 52.30103 * 28 27 14 30 30 H 0.97001 * 120.00049 * 359.97438 * 1 2 3 31 31 H 0.97009 * 119.99773 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46863 * 300.00112 * 10 9 7 33 33 H 1.09002 * 109.46865 * 59.99247 * 10 9 7 34 34 H 1.08995 * 109.68210 * 307.50035 * 13 11 10 35 35 H 1.08997 * 109.67868 * 68.05241 * 13 11 10 36 36 H 1.08003 * 119.63596 * 0.02562 * 18 17 15 37 37 H 1.07999 * 119.47575 * 180.24561 * 19 18 17 38 38 H 1.08005 * 119.95910 * 179.76155 * 20 19 18 39 39 H 1.07997 * 120.92054 * 0.04010 * 22 21 20 40 40 H 1.07994 * 120.04115 * 180.02562 * 23 22 21 41 41 H 1.07999 * 119.14774 * 180.02562 * 24 23 22 42 42 H 1.09005 * 109.68304 * 69.18521 * 27 14 13 43 43 H 1.09002 * 109.68637 * 189.70497 * 27 14 13 44 44 H 1.09004 * 109.51261 * 172.22808 * 28 27 14 45 45 H 1.08999 * 109.51039 * 292.37547 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3785 -4.7124 0.8409 13 6 1.8253 -6.1443 0.1259 14 7 0.8708 -7.2481 -0.0638 15 6 0.8012 -8.2645 0.8186 16 8 1.5920 -8.3245 1.7405 17 6 -0.2336 -9.3035 0.6662 18 6 -0.3853 -9.9695 -0.5415 19 6 -1.3543 -10.9526 -0.6929 20 6 -2.1878 -11.2827 0.3345 21 6 -2.0720 -10.6299 1.5726 22 6 -2.9193 -10.9516 2.6502 23 6 -2.7513 -10.2764 3.8262 24 6 -1.7627 -9.3018 3.9319 25 7 -0.9756 -9.0057 2.9245 26 6 -1.0875 -9.6281 1.7505 27 6 -0.0050 -7.2097 -1.2456 28 6 -0.6772 -5.8332 -1.3047 29 8 0.3244 -4.8164 -1.2235 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.6847 -3.7145 -0.8905 33 1 2.6848 -3.7145 0.8894 34 1 2.6019 -6.1952 -0.6371 35 1 2.2769 -6.2155 1.1154 36 1 0.2599 -9.7233 -1.3719 37 1 -1.4520 -11.4609 -1.6407 38 1 -2.9377 -12.0475 0.1961 39 1 -3.6805 -11.7111 2.5502 40 1 -3.3841 -10.4990 4.6725 41 1 -1.6404 -8.7759 4.8673 42 1 0.5874 -7.3679 -2.1468 43 1 -0.7650 -7.9868 -1.1648 44 1 -1.2216 -5.7339 -2.2439 45 1 -1.3695 -5.7300 -0.4692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717174082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:44 Heat of formation + Delta-G solvation = 8.942326 kcal Electronic energy + Delta-G solvation = -29181.848820 eV Core-core repulsion = 25165.324244 eV Total energy + Delta-G solvation = -4016.524576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.40978 -40.05654 -38.21794 -37.30592 -34.98764 -34.33045 -33.83837 -32.19900 -31.00125 -30.72477 -29.99332 -28.03799 -25.83802 -24.84975 -23.97835 -23.49040 -23.36237 -22.03765 -20.79859 -19.52730 -18.80676 -17.68159 -17.27148 -17.06098 -16.68709 -16.35315 -15.83000 -15.42428 -15.14533 -14.97138 -14.62137 -14.57782 -14.44070 -14.15689 -14.02423 -13.58942 -13.40375 -13.12724 -12.97835 -12.74808 -12.54422 -12.36943 -12.28092 -11.91405 -11.75711 -11.55103 -10.95431 -10.89427 -10.84447 -10.74331 -10.43845 -10.12490 -9.97080 -9.83909 -9.66518 -9.56160 -9.18455 -8.81635 -8.67063 -8.45039 -6.84439 -5.68205 -2.96735 -0.17372 0.41420 1.44263 2.40605 2.61822 2.92025 3.49971 3.53499 3.55019 3.73676 3.89728 3.99918 4.05401 4.32576 4.34332 4.50118 4.51896 4.62992 4.66994 4.78840 4.87891 4.93316 4.97925 5.12222 5.18156 5.24009 5.36603 5.44897 5.51576 5.53251 5.61916 5.64481 5.71709 5.75882 5.77526 5.89578 5.94917 6.01873 6.06578 6.32040 6.36361 6.39276 6.62285 6.75256 7.26546 7.51306 7.64439 7.75856 8.09898 8.49904 9.61375 10.18916 10.54866 11.54659 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018135 B = 0.002449 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.628065 B =11428.763512 C =11952.790456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.164 3.836 11 C 0.074 3.926 12 H 0.064 0.936 13 C 0.089 3.911 14 N -0.609 5.609 15 C 0.569 3.431 16 O -0.513 6.513 17 C -0.097 4.097 18 C -0.070 4.070 19 C -0.122 4.122 20 C -0.076 4.076 21 C -0.108 4.108 22 C -0.057 4.057 23 C -0.174 4.174 24 C 0.139 3.861 25 N -0.458 5.458 26 C 0.160 3.840 27 C 0.064 3.936 28 C 0.046 3.954 29 O -0.358 6.358 30 H 0.255 0.745 31 H 0.387 0.613 32 H 0.030 0.970 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.162 0.838 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.665 -29.096 0.139 30.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.371 5.371 10 C 0.036 3.964 11 C 0.015 3.985 12 H 0.082 0.918 13 C -0.034 4.034 14 N -0.344 5.344 15 C 0.357 3.643 16 O -0.388 6.388 17 C -0.101 4.101 18 C -0.090 4.090 19 C -0.140 4.140 20 C -0.095 4.095 21 C -0.110 4.110 22 C -0.083 4.083 23 C -0.193 4.193 24 C -0.034 4.034 25 N -0.165 5.165 26 C 0.037 3.963 27 C -0.059 4.059 28 C -0.032 4.032 29 O -0.276 6.276 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.179 0.821 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.122 0.878 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.359 -28.210 0.492 29.158 hybrid contribution -0.716 0.018 0.066 0.719 sum -8.074 -28.191 0.557 29.330 Atomic orbital electron populations 1.69667 1.05117 1.25635 1.57724 1.24741 0.95523 0.97655 1.03105 0.86249 0.78476 0.83515 0.77827 1.21278 1.21740 1.21289 1.19189 0.90997 0.84099 1.42688 0.91177 1.42225 1.06011 0.99502 1.89349 1.20613 0.92394 0.84603 0.98825 1.22807 0.94234 0.94205 0.87263 0.91823 1.22344 0.91571 0.85133 1.04323 1.48051 1.38809 1.22883 1.24621 1.17889 0.83716 0.81139 0.81578 1.90808 1.41145 1.75372 1.31463 1.19778 0.97531 0.99435 0.93385 1.21451 0.97226 0.94670 0.95696 1.20836 0.95661 0.97772 0.99771 1.21149 0.98540 0.98253 0.91544 1.18802 0.97941 0.98465 0.95836 1.21486 0.96936 0.97898 0.91951 1.21965 1.00273 0.98068 0.99043 1.23140 0.89493 0.93388 0.97367 1.68109 1.23936 1.25314 0.99157 1.18523 0.93369 0.92727 0.91644 1.22739 0.94764 1.00094 0.88302 1.22899 0.90944 0.86499 1.02835 1.88149 1.49613 1.52053 1.37744 0.93544 0.77921 0.95242 0.94607 0.90324 0.87956 0.84375 0.84601 0.84759 0.84106 0.84204 0.82051 0.90171 0.88832 0.87814 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.17 13.06 55.49 0.72 -28.45 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.73 -19.51 5.55 -59.91 -0.33 -19.85 16 10 C 0.16 3.50 5.93 -4.05 -0.02 3.48 16 11 C 0.07 1.34 2.81 -26.58 -0.07 1.27 16 12 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 13 C 0.09 1.38 5.91 -3.53 -0.02 1.36 16 14 N -0.61 -8.67 3.02 -173.55 -0.52 -9.19 16 15 C 0.57 8.85 6.90 -12.51 -0.09 8.76 16 16 O -0.51 -9.83 16.21 5.27 0.09 -9.75 16 17 C -0.10 -1.23 4.98 -104.61 -0.52 -1.76 16 18 C -0.07 -0.61 7.39 -39.16 -0.29 -0.90 16 19 C -0.12 -0.79 9.93 -40.03 -0.40 -1.19 16 20 C -0.08 -0.51 9.75 -39.43 -0.38 -0.89 16 21 C -0.11 -1.02 5.74 -106.82 -0.61 -1.63 16 22 C -0.06 -0.40 9.90 -39.19 -0.39 -0.79 16 23 C -0.17 -1.26 10.03 -39.79 -0.40 -1.66 16 24 C 0.14 1.41 11.15 -17.44 -0.19 1.21 16 25 N -0.46 -6.50 9.51 -10.76 -0.10 -6.60 16 26 C 0.16 2.06 6.60 -84.58 -0.56 1.51 16 27 C 0.06 0.71 5.58 -3.54 -0.02 0.69 16 28 C 0.05 0.62 6.98 37.31 0.26 0.88 16 29 O -0.36 -6.50 10.33 -35.23 -0.36 -6.86 16 30 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.39 11.04 7.67 -40.82 -0.31 10.73 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.10 1.69 7.12 -51.93 -0.37 1.32 16 36 H 0.14 0.95 7.19 -52.48 -0.38 0.57 16 37 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.13 0.48 8.06 -52.48 -0.42 0.05 16 39 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.85 4.83 -51.93 -0.25 0.60 16 44 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -38.28 373.86 -9.79 -48.07 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.93 Total: 6.25 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -3.96 Total: 2.73 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: -0.23 Total: -64.08 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.28 Total: -16.61 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.28 -9.79 -48.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717174082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.008 kcal (2) G-P(sol) polarization free energy of solvation -38.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds