Wall clock time and date at job start Sat Apr 11 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00040 * 2 1 4 4 H 1.48504 * 109.47499 * 240.00172 * 3 2 1 5 5 H 1.48504 * 109.47175 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47276 * 120.00202 * 3 2 1 7 7 C 1.38818 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99740 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00242 * 359.97438 * 7 2 1 10 10 C 1.46491 * 120.00538 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47752 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.51517 * 305.10581 * 11 10 9 13 13 C 1.53294 * 109.51712 * 184.99638 * 11 10 9 14 14 N 1.47150 * 108.38574 * 187.77605 * 13 11 10 15 15 C 1.34783 * 120.98203 * 230.51423 * 14 13 11 16 16 O 1.21608 * 119.99457 * 355.17917 * 15 14 13 17 17 C 1.47432 * 120.00182 * 175.17286 * 15 14 13 18 18 C 1.38745 * 120.33023 * 52.53018 * 17 15 14 19 19 C 1.38860 * 120.73090 * 179.78134 * 18 17 15 20 20 C 1.36351 * 121.05195 * 0.50570 * 19 18 17 21 21 C 1.40438 * 120.08686 * 359.73998 * 20 19 18 22 22 C 1.40809 * 121.26071 * 180.02562 * 21 20 19 23 23 C 1.36634 * 118.15374 * 180.02562 * 22 21 20 24 24 C 1.39226 * 119.90614 * 359.97438 * 23 22 21 25 25 N 1.31231 * 121.70237 * 0.02562 * 24 23 22 26 26 C 1.33346 * 121.35098 * 359.95571 * 25 24 23 27 27 C 1.47141 * 118.03748 * 50.53634 * 14 13 11 28 28 C 1.53296 * 108.38659 * 309.46694 * 27 14 13 29 29 O 1.42959 * 109.22223 * 52.30103 * 28 27 14 30 30 H 0.97001 * 120.00049 * 359.97438 * 1 2 3 31 31 H 0.97009 * 119.99773 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46863 * 300.00112 * 10 9 7 33 33 H 1.09002 * 109.46865 * 59.99247 * 10 9 7 34 34 H 1.08995 * 109.68210 * 307.50035 * 13 11 10 35 35 H 1.08997 * 109.67868 * 68.05241 * 13 11 10 36 36 H 1.08003 * 119.63596 * 0.02562 * 18 17 15 37 37 H 1.07999 * 119.47575 * 180.24561 * 19 18 17 38 38 H 1.08005 * 119.95910 * 179.76155 * 20 19 18 39 39 H 1.07997 * 120.92054 * 0.04010 * 22 21 20 40 40 H 1.07994 * 120.04115 * 180.02562 * 23 22 21 41 41 H 1.07999 * 119.14774 * 180.02562 * 24 23 22 42 42 H 1.09005 * 109.68304 * 69.18521 * 27 14 13 43 43 H 1.09002 * 109.68637 * 189.70497 * 27 14 13 44 44 H 1.09004 * 109.51261 * 172.22808 * 28 27 14 45 45 H 1.08999 * 109.51039 * 292.37547 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3785 -4.7124 0.8409 13 6 1.8253 -6.1443 0.1259 14 7 0.8708 -7.2481 -0.0638 15 6 0.8012 -8.2645 0.8186 16 8 1.5920 -8.3245 1.7405 17 6 -0.2336 -9.3035 0.6662 18 6 -0.3853 -9.9695 -0.5415 19 6 -1.3543 -10.9526 -0.6929 20 6 -2.1878 -11.2827 0.3345 21 6 -2.0720 -10.6299 1.5726 22 6 -2.9193 -10.9516 2.6502 23 6 -2.7513 -10.2764 3.8262 24 6 -1.7627 -9.3018 3.9319 25 7 -0.9756 -9.0057 2.9245 26 6 -1.0875 -9.6281 1.7505 27 6 -0.0050 -7.2097 -1.2456 28 6 -0.6772 -5.8332 -1.3047 29 8 0.3244 -4.8164 -1.2235 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.6847 -3.7145 -0.8905 33 1 2.6848 -3.7145 0.8894 34 1 2.6019 -6.1952 -0.6371 35 1 2.2769 -6.2155 1.1154 36 1 0.2599 -9.7233 -1.3719 37 1 -1.4520 -11.4609 -1.6407 38 1 -2.9377 -12.0475 0.1961 39 1 -3.6805 -11.7111 2.5502 40 1 -3.3841 -10.4990 4.6725 41 1 -1.6404 -8.7759 4.8673 42 1 0.5874 -7.3679 -2.1468 43 1 -0.7650 -7.9868 -1.1648 44 1 -1.2216 -5.7339 -2.2439 45 1 -1.3695 -5.7300 -0.4692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717174082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:43 Heat of formation + Delta-G solvation = -19.022140 kcal Electronic energy + Delta-G solvation = -29183.061450 eV Core-core repulsion = 25165.324244 eV Total energy + Delta-G solvation = -4017.737206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.18321 -41.11695 -39.47191 -37.99895 -36.68695 -35.78424 -34.55183 -33.92021 -32.10856 -31.56918 -31.16561 -29.34168 -27.41141 -25.60137 -25.14179 -24.55333 -24.39181 -23.42911 -22.22802 -20.52120 -19.47534 -19.21743 -18.51981 -18.00767 -17.79380 -17.46965 -17.01261 -16.59330 -16.49323 -16.05672 -15.86711 -15.61407 -15.35288 -15.30291 -15.04314 -14.93780 -14.52195 -14.33647 -14.15155 -13.97905 -13.84400 -13.54929 -13.15032 -13.05768 -12.77740 -12.70134 -12.59742 -12.35090 -12.30441 -12.11381 -11.89540 -11.71116 -11.55903 -11.28959 -11.03294 -10.96940 -10.37167 -9.81643 -9.71436 -9.28337 -9.03627 -7.95040 -5.25416 -0.79967 -0.20805 0.77097 1.46030 1.48392 1.51196 1.57120 1.76318 1.99326 2.55685 2.68770 3.05727 3.21238 3.32015 3.38388 3.50216 3.75547 3.76261 3.83806 3.87744 3.94560 4.00388 4.02468 4.08904 4.16700 4.26596 4.37216 4.38127 4.42886 4.50781 4.59045 4.63220 4.70494 4.78275 4.88329 4.90807 4.96967 5.04108 5.07069 5.20127 5.22525 5.35192 5.46618 5.54492 5.81309 6.15394 6.18353 6.25600 6.95534 6.98919 7.31525 8.04207 8.29918 9.28685 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018135 B = 0.002449 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.628065 B =11428.763512 C =11952.790456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.980 3.020 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.079 0.921 9 N -0.741 5.741 10 C 0.162 3.838 11 C 0.090 3.910 12 H 0.038 0.962 13 C 0.098 3.902 14 N -0.611 5.611 15 C 0.567 3.433 16 O -0.567 6.567 17 C -0.145 4.145 18 C -0.052 4.052 19 C -0.123 4.123 20 C -0.058 4.058 21 C -0.126 4.126 22 C -0.046 4.046 23 C -0.177 4.177 24 C 0.122 3.878 25 N -0.524 5.524 26 C 0.129 3.871 27 C 0.070 3.930 28 C 0.039 3.961 29 O -0.383 6.383 30 H 0.252 0.748 31 H 0.374 0.626 32 H 0.036 0.964 33 H 0.042 0.958 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.157 0.843 37 H 0.178 0.822 38 H 0.177 0.823 39 H 0.185 0.815 40 H 0.175 0.825 41 H 0.169 0.831 42 H 0.106 0.894 43 H 0.119 0.881 44 H 0.134 0.866 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.099 -32.035 -1.786 33.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.808 3.192 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.097 0.903 9 N -0.384 5.384 10 C 0.035 3.965 11 C 0.031 3.969 12 H 0.056 0.944 13 C -0.025 4.025 14 N -0.344 5.344 15 C 0.357 3.643 16 O -0.445 6.445 17 C -0.149 4.149 18 C -0.072 4.072 19 C -0.140 4.140 20 C -0.076 4.076 21 C -0.128 4.128 22 C -0.071 4.071 23 C -0.196 4.196 24 C -0.049 4.049 25 N -0.233 5.233 26 C 0.007 3.993 27 C -0.051 4.051 28 C -0.038 4.038 29 O -0.301 6.301 30 H 0.061 0.939 31 H 0.205 0.795 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.174 0.826 37 H 0.195 0.805 38 H 0.195 0.805 39 H 0.203 0.797 40 H 0.192 0.808 41 H 0.186 0.814 42 H 0.124 0.876 43 H 0.137 0.863 44 H 0.152 0.848 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.783 -31.186 -1.457 32.431 hybrid contribution -0.362 0.799 0.660 1.098 sum -9.145 -30.387 -0.797 31.743 Atomic orbital electron populations 1.69844 1.06794 1.26222 1.59264 1.25662 0.96479 1.01367 1.03431 0.85118 0.77130 0.78622 0.78299 1.20110 1.21978 1.20295 1.19648 0.91630 0.85163 1.41703 0.90312 1.42420 1.05619 1.00886 1.89444 1.20739 0.92960 0.83756 0.99020 1.22426 0.93360 0.94341 0.86809 0.94365 1.22081 0.91900 0.84521 1.04010 1.48154 1.38758 1.22002 1.25492 1.18501 0.83614 0.81657 0.80512 1.90750 1.43299 1.76950 1.33541 1.19694 0.98621 1.00947 0.95643 1.21778 0.97246 0.93846 0.94380 1.21291 0.94382 0.96885 1.01479 1.21689 0.98468 0.97539 0.89949 1.19162 0.97633 0.98066 0.97986 1.22033 0.96595 0.97730 0.90771 1.22269 0.99671 0.97035 1.00653 1.23518 0.89997 0.94383 0.97028 1.68020 1.26473 1.27910 1.00863 1.18861 0.94907 0.94206 0.91325 1.22914 0.95169 0.99174 0.87865 1.23207 0.90049 0.86751 1.03786 1.88086 1.50699 1.54282 1.37079 0.93948 0.79454 0.94618 0.94064 0.88658 0.89603 0.82591 0.80493 0.80523 0.79747 0.80799 0.81428 0.87563 0.86331 0.84810 0.94421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.24 13.06 21.65 0.28 -61.96 16 2 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 3 Si 0.98 47.87 29.55 68.60 2.03 49.89 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.25 -14.80 9.99 84.04 0.84 -13.96 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 9 N -0.74 -41.16 5.55 -343.47 -1.91 -43.07 16 10 C 0.16 7.18 5.93 86.38 0.51 7.69 16 11 C 0.09 3.43 2.81 30.69 0.09 3.52 16 12 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 13 C 0.10 3.21 5.91 86.35 0.51 3.72 16 14 N -0.61 -17.82 3.02 -821.24 -2.48 -20.30 16 15 C 0.57 18.61 6.90 86.66 0.60 19.21 16 16 O -0.57 -23.64 16.21 -4.06 -0.07 -23.70 16 17 C -0.15 -3.71 4.98 -19.86 -0.10 -3.81 16 18 C -0.05 -0.79 7.39 22.54 0.17 -0.62 16 19 C -0.12 -1.02 9.93 21.98 0.22 -0.81 16 20 C -0.06 -0.51 9.75 22.37 0.22 -0.29 16 21 C -0.13 -2.10 5.74 -21.29 -0.12 -2.22 16 22 C -0.05 -0.51 9.90 22.52 0.22 -0.28 16 23 C -0.18 -2.30 10.03 22.13 0.22 -2.08 16 24 C 0.12 2.64 11.15 85.02 0.95 3.58 16 25 N -0.52 -16.09 9.51 -187.97 -1.79 -17.87 16 26 C 0.13 3.41 6.60 40.61 0.27 3.68 16 27 C 0.07 1.47 5.58 86.36 0.48 1.95 16 28 C 0.04 1.04 6.98 72.08 0.50 1.54 16 29 O -0.38 -14.17 10.33 -148.98 -1.54 -15.71 16 30 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 31 H 0.37 22.33 7.67 -92.70 -0.71 21.62 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.09 3.08 7.12 -2.39 -0.02 3.06 16 36 H 0.16 1.64 7.19 -2.91 -0.02 1.62 16 37 H 0.18 0.06 8.06 -2.91 -0.02 0.04 16 38 H 0.18 0.05 8.06 -2.91 -0.02 0.03 16 39 H 0.19 0.34 8.06 -2.91 -0.02 0.31 16 40 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 41 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 42 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.12 1.90 4.83 -2.39 -0.01 1.89 16 44 H 0.13 2.70 8.14 -2.38 -0.02 2.68 16 45 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -90.35 373.86 0.88 -89.47 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.31 Total: 26.63 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 6.04 Total: 16.63 kcal Atomic # 7 Polarization: -137.31 SS G_CDS: -5.89 Total: -143.20 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -1.61 Total: -39.42 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.89 kcal Total: -90.35 0.88 -89.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717174082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.446 kcal (2) G-P(sol) polarization free energy of solvation -90.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds