Wall clock time and date at job start Sat Apr 11 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99843 * 2 1 4 4 H 1.48490 * 109.47457 * 270.00565 * 3 2 1 5 5 H 1.48503 * 109.46703 * 30.00740 * 3 2 1 6 6 H 1.48508 * 109.46899 * 150.00022 * 3 2 1 7 7 C 1.38819 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99406 * 359.97438 * 7 2 1 9 9 N 1.36928 * 120.00026 * 179.97438 * 7 2 1 10 10 C 1.46507 * 119.99708 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46790 * 180.02562 * 10 9 7 12 12 H 1.09008 * 109.51351 * 304.89290 * 11 10 9 13 13 C 1.52882 * 109.62046 * 184.90560 * 11 10 9 14 14 N 1.47156 * 108.60644 * 187.89358 * 13 11 10 15 15 C 1.34777 * 120.98046 * 230.50188 * 14 13 11 16 16 O 1.21539 * 120.00179 * 4.79195 * 15 14 13 17 17 C 1.47949 * 119.99649 * 184.79509 * 15 14 13 18 18 N 1.32202 * 120.15725 * 75.42771 * 17 15 14 19 19 C 1.32028 * 122.67628 * 180.02562 * 18 17 15 20 20 C 1.36686 * 122.03370 * 0.02562 * 19 18 17 21 21 C 1.40525 * 118.84776 * 359.97438 * 20 19 18 22 22 C 1.40321 * 122.22455 * 179.97438 * 21 20 19 23 23 C 1.36207 * 119.45437 * 180.02562 * 22 21 20 24 24 C 1.39377 * 120.99985 * 0.02562 * 23 22 21 25 25 C 1.36259 * 121.08737 * 359.96581 * 24 23 22 26 26 C 1.40093 * 119.53450 * 0.26487 * 25 24 23 27 27 C 1.47148 * 118.03322 * 50.22760 * 14 13 11 28 28 C 1.53290 * 108.38775 * 309.71386 * 27 14 13 29 29 O 1.42961 * 109.51794 * 64.99829 * 11 10 9 30 30 H 0.96992 * 120.00645 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00701 * 359.97438 * 9 7 2 32 32 H 1.08990 * 109.47311 * 59.99895 * 10 9 7 33 33 H 1.08995 * 109.47047 * 299.99316 * 10 9 7 34 34 H 1.09005 * 109.61706 * 68.08028 * 13 11 10 35 35 H 1.08992 * 109.52243 * 307.65988 * 13 11 10 36 36 H 1.08002 * 118.98311 * 180.02562 * 19 18 17 37 37 H 1.08002 * 120.57368 * 180.02562 * 20 19 18 38 38 H 1.07996 * 120.27202 * 0.02562 * 22 21 20 39 39 H 1.07994 * 119.49829 * 180.02562 * 23 22 21 40 40 H 1.08003 * 119.45936 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.23327 * 180.02562 * 25 24 23 42 42 H 1.08997 * 109.68182 * 69.44004 * 27 14 13 43 43 H 1.09002 * 109.68408 * 189.95270 * 27 14 13 44 44 H 1.09003 * 109.51917 * 172.22595 * 28 27 14 45 45 H 1.09003 * 109.51644 * 292.37887 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.3999 5 1 1.4475 2.6526 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 6 5.6164 -2.1911 -0.0011 12 1 5.8670 -1.5467 -0.8438 13 6 6.3834 -3.5079 -0.1242 14 7 7.8168 -3.2361 0.0685 15 6 8.7327 -3.6860 -0.8120 16 8 8.3741 -4.2506 -1.8268 17 6 10.1746 -3.4926 -0.5431 18 7 10.7896 -4.2443 0.3538 19 6 12.0734 -4.1142 0.6333 20 6 12.8605 -3.1863 0.0105 21 6 12.2827 -2.3467 -0.9570 22 6 13.0242 -1.3700 -1.6391 23 6 12.4066 -0.5863 -2.5661 24 6 11.0500 -0.7397 -2.8466 25 6 10.3002 -1.6781 -2.2033 26 6 10.8999 -2.4994 -1.2398 27 6 8.2199 -2.4535 1.2475 28 6 7.3630 -1.1836 1.3010 29 8 5.9819 -1.5439 1.2201 30 1 -0.4851 0.8399 0.0004 31 1 3.8647 -0.3621 -0.0014 32 1 3.8486 -3.0426 -0.8907 33 1 3.8493 -3.0421 0.8892 34 1 6.2206 -3.9351 -1.1138 35 1 6.0360 -4.2045 0.6387 36 1 12.5153 -4.7608 1.3769 37 1 13.9085 -3.1004 0.2572 38 1 14.0760 -1.2408 -1.4306 39 1 12.9767 0.1654 -3.0918 40 1 10.5854 -0.1044 -3.5862 41 1 9.2501 -1.7853 -2.4318 42 1 8.0606 -3.0422 2.1509 43 1 9.2728 -2.1833 1.1664 44 1 7.5479 -0.6586 2.2382 45 1 7.6198 -0.5354 0.4631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717178891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:49 Heat of formation + Delta-G solvation = 8.643596 kcal Electronic energy + Delta-G solvation = -29382.139726 eV Core-core repulsion = 25365.602196 eV Total energy + Delta-G solvation = -4016.537530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.62873 -40.16437 -38.46193 -37.76772 -35.24992 -34.58174 -33.54487 -32.26395 -31.72353 -30.66439 -30.20167 -28.39526 -26.45825 -24.88637 -24.05739 -23.60958 -23.25525 -21.96012 -21.04683 -19.93722 -18.45446 -18.05503 -17.70157 -17.40767 -16.86377 -16.48492 -16.09588 -15.59701 -15.24796 -15.11013 -14.80196 -14.64683 -14.38062 -14.33108 -14.22557 -14.07979 -13.45680 -13.21149 -13.11731 -12.84858 -12.63987 -12.55429 -12.32998 -12.27825 -11.85449 -11.71932 -11.24307 -11.09550 -10.85327 -10.78667 -10.58988 -10.38826 -10.16263 -10.02714 -9.86697 -9.61000 -9.56028 -8.88670 -8.72919 -8.56207 -7.20466 -5.73335 -3.08652 -0.27503 0.40114 1.32947 2.11958 2.43643 2.59506 3.41114 3.45900 3.48265 3.50128 3.70614 3.77872 4.03235 4.19072 4.28700 4.38922 4.53709 4.62545 4.63560 4.66563 4.75360 4.83652 4.85967 4.93911 4.98886 5.15459 5.21574 5.25963 5.33032 5.47254 5.50877 5.56018 5.56833 5.58357 5.70428 5.76167 5.88232 5.92331 5.94956 6.02809 6.13391 6.31534 6.45552 6.59242 6.97148 7.28107 7.36526 7.71674 8.01729 8.45229 9.24344 9.96611 10.16723 11.44990 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016853 B = 0.002760 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.062403 B =10143.143362 C =10872.832557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.243 4.243 8 H 0.091 0.909 9 N -0.750 5.750 10 C 0.168 3.832 11 C 0.069 3.931 12 H 0.064 0.936 13 C 0.085 3.915 14 N -0.598 5.598 15 C 0.581 3.419 16 O -0.519 6.519 17 C 0.143 3.857 18 N -0.455 5.455 19 C 0.079 3.921 20 C -0.140 4.140 21 C -0.025 4.025 22 C -0.112 4.112 23 C -0.093 4.093 24 C -0.110 4.110 25 C -0.086 4.086 26 C -0.083 4.083 27 C 0.078 3.922 28 C 0.046 3.954 29 O -0.359 6.359 30 H 0.259 0.741 31 H 0.364 0.636 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.162 0.838 37 H 0.144 0.856 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.600 -3.381 -0.368 32.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.191 4.191 3 Si 0.713 3.287 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.373 4.373 8 H 0.109 0.891 9 N -0.396 5.396 10 C 0.040 3.960 11 C 0.010 3.990 12 H 0.082 0.918 13 C -0.037 4.037 14 N -0.331 5.331 15 C 0.366 3.634 16 O -0.393 6.393 17 C -0.011 4.011 18 N -0.166 5.166 19 C -0.067 4.067 20 C -0.160 4.160 21 C -0.030 4.030 22 C -0.130 4.130 23 C -0.112 4.112 24 C -0.128 4.128 25 C -0.105 4.105 26 C -0.085 4.085 27 C -0.045 4.045 28 C -0.032 4.032 29 O -0.277 6.277 30 H 0.069 0.931 31 H 0.197 0.803 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.179 0.821 37 H 0.162 0.838 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.125 0.875 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 31.642 -4.427 -0.251 31.952 hybrid contribution 1.435 1.785 -0.505 2.346 sum 33.078 -2.642 -0.756 33.192 Atomic orbital electron populations 1.69697 1.05094 1.25816 1.57656 1.24652 0.95220 0.97208 1.02019 0.86551 0.79497 0.84946 0.77707 1.21181 1.21741 1.19997 1.19051 0.80461 0.94821 1.42928 0.89112 1.42566 1.03979 1.01967 1.91090 1.20600 0.85249 0.90302 0.99825 1.22807 0.96869 0.92058 0.87269 0.91822 1.22356 0.77882 0.98528 1.04943 1.48033 1.07212 1.53546 1.24326 1.17783 0.84077 0.78593 0.82948 1.90847 1.80283 1.42156 1.26008 1.21234 0.94427 0.92415 0.92982 1.67376 1.11884 1.23713 1.13591 1.22256 0.88546 0.97044 0.98817 1.22119 1.01482 0.96118 0.96288 1.18136 0.92262 0.96277 0.96300 1.20994 0.99974 0.95277 0.96776 1.21076 0.94825 0.98548 0.96754 1.21040 0.94117 0.98012 0.99661 1.21060 1.00679 0.94346 0.94436 1.18665 0.93823 0.97388 0.98671 1.22467 0.99550 0.93821 0.88667 1.22939 0.82790 0.94467 1.03034 1.88161 1.23391 1.78091 1.38034 0.93078 0.80326 0.93578 0.94296 0.87494 0.89591 0.82088 0.83832 0.84683 0.85107 0.84978 0.84923 0.89677 0.89867 0.87541 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.74 13.97 55.49 0.78 -28.97 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 22.48 27.73 -169.99 -4.71 17.76 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.27 -6.65 6.52 56.52 0.37 -6.28 16 7 C -0.24 -7.00 10.47 -15.06 -0.16 -7.16 16 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 9 N -0.75 -18.30 5.35 -59.91 -0.32 -18.62 16 10 C 0.17 3.27 5.93 -4.04 -0.02 3.24 16 11 C 0.07 1.10 2.80 -26.79 -0.07 1.02 16 12 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 13 C 0.09 1.18 5.92 -3.74 -0.02 1.15 16 14 N -0.60 -7.79 3.03 -173.61 -0.53 -8.32 16 15 C 0.58 8.25 6.09 -12.28 -0.07 8.17 16 16 O -0.52 -8.85 16.56 5.33 0.09 -8.77 16 17 C 0.14 1.77 4.59 -82.55 -0.38 1.39 16 18 N -0.46 -5.27 10.24 -9.81 -0.10 -5.37 16 19 C 0.08 0.65 11.06 -18.03 -0.20 0.45 16 20 C -0.14 -0.97 9.88 -39.28 -0.39 -1.36 16 21 C -0.02 -0.21 5.75 -106.82 -0.61 -0.83 16 22 C -0.11 -0.73 9.82 -39.53 -0.39 -1.12 16 23 C -0.09 -0.59 9.95 -39.89 -0.40 -0.99 16 24 C -0.11 -0.87 9.95 -39.87 -0.40 -1.26 16 25 C -0.09 -0.88 9.42 -39.60 -0.37 -1.25 16 26 C -0.08 -0.90 5.76 -106.59 -0.61 -1.52 16 27 C 0.08 0.85 6.52 -3.54 -0.02 0.83 16 28 C 0.05 0.54 6.98 37.31 0.26 0.80 16 29 O -0.36 -5.83 10.33 -35.23 -0.36 -6.19 16 30 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 31 H 0.36 8.79 5.53 -40.82 -0.23 8.56 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.11 1.51 7.06 -51.93 -0.37 1.14 16 35 H 0.09 1.12 8.13 -51.93 -0.42 0.70 16 36 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 38 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 41 H 0.13 1.46 7.22 -52.49 -0.38 1.08 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.08 0.81 6.48 -51.93 -0.34 0.48 16 44 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 374.28 15.07 5.64 5.64 Total: -1.00 -36.39 374.28 -9.46 -45.84 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.97 Total: 5.38 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -3.96 Total: 1.62 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.17 Total: -61.28 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.28 Total: -14.96 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.39 -9.46 -45.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717178891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.486 kcal (2) G-P(sol) polarization free energy of solvation -36.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds