Wall clock time and date at job start Sat Apr 11 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.71854 * 7 2 1 9 9 N 1.36936 * 119.99842 * 179.72505 * 7 2 1 10 10 C 1.46493 * 120.00314 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47092 * 34.99415 * 10 9 7 12 12 C 1.53006 * 109.46887 * 274.99849 * 10 9 7 13 13 O 1.42903 * 109.47139 * 294.99877 * 12 10 9 14 14 C 1.52993 * 109.47542 * 154.99721 * 10 9 7 15 15 N 1.46493 * 109.47346 * 305.00099 * 14 10 9 16 16 C 1.34781 * 120.00398 * 180.02562 * 15 14 10 17 17 O 1.21545 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.47856 * 119.99898 * 180.02562 * 16 15 14 19 19 C 1.39620 * 120.50575 * 359.71899 * 18 16 15 20 20 N 1.31692 * 120.83103 * 179.70285 * 19 18 16 21 21 C 1.31809 * 122.01789 * 0.59336 * 20 19 18 22 22 C 1.39412 * 120.90926 * 359.69492 * 21 20 19 23 23 C 1.48405 * 120.46541 * 179.97438 * 22 21 20 24 24 C 1.39325 * 120.12044 * 179.75032 * 23 22 21 25 25 C 1.38020 * 119.88298 * 179.70083 * 24 23 22 26 26 C 1.38319 * 120.11499 * 0.59863 * 25 24 23 27 27 C 1.38319 * 120.24648 * 359.67850 * 26 25 24 28 28 C 1.38023 * 120.11795 * 0.02562 * 27 26 25 29 29 C 1.39509 * 119.06329 * 0.02562 * 22 21 20 30 30 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99646 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47285 * 54.99959 * 12 10 9 33 33 H 1.09002 * 109.47155 * 175.00004 * 12 10 9 34 34 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 35 35 H 1.09009 * 109.47018 * 64.99747 * 14 10 9 36 36 H 1.09002 * 109.47579 * 184.99417 * 14 10 9 37 37 H 0.96998 * 119.99959 * 359.97438 * 15 14 10 38 38 H 1.08007 * 119.58475 * 359.97438 * 19 18 16 39 39 H 1.07994 * 119.55072 * 179.67887 * 21 20 19 40 40 H 1.08007 * 120.06181 * 359.97438 * 24 23 22 41 41 H 1.08001 * 119.94474 * 180.31915 * 25 24 23 42 42 H 1.08006 * 119.88320 * 179.69659 * 26 25 24 43 43 H 1.08002 * 119.94665 * 180.02562 * 27 26 25 44 44 H 1.08003 * 120.06227 * 180.02562 * 28 27 26 45 45 H 1.07997 * 120.90871 * 179.97438 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0058 9 7 3.3795 -1.2022 -0.0115 10 6 4.1120 -2.4709 -0.0183 11 1 3.5621 -3.2048 -0.6075 12 6 4.2641 -2.9795 1.4167 13 8 5.0834 -2.0739 2.1588 14 6 5.4966 -2.2572 -0.6331 15 7 5.3536 -1.6583 -1.9623 16 6 6.4485 -1.3791 -2.6971 17 8 7.5545 -1.6238 -2.2566 18 6 6.3040 -0.7741 -4.0384 19 6 5.0384 -0.4930 -4.5566 20 7 4.9025 0.0511 -5.7481 21 6 5.9409 0.3430 -6.5057 22 6 7.2402 0.0901 -6.0681 23 6 8.4023 0.4221 -6.9293 24 6 9.6979 0.1711 -6.4827 25 6 10.7748 0.4761 -7.2902 26 6 10.5701 1.0415 -8.5359 27 6 9.2862 1.2982 -8.9820 28 6 8.2018 0.9915 -8.1851 29 6 7.4325 -0.4805 -4.8096 30 1 -0.4850 0.8400 0.0004 31 1 3.8645 -0.3622 -0.0119 32 1 3.2818 -3.0473 1.8842 33 1 4.7299 -3.9650 1.4055 34 1 5.2233 -2.3343 3.0795 35 1 6.0785 -1.5916 0.0046 36 1 6.0077 -3.2161 -0.7196 37 1 4.4709 -1.4634 -2.3140 38 1 4.1598 -0.7208 -3.9711 39 1 5.7832 0.7839 -7.4788 40 1 9.8591 -0.2655 -5.5081 41 1 11.7794 0.2772 -6.9471 42 1 11.4158 1.2832 -9.1627 43 1 9.1319 1.7394 -9.9557 44 1 7.1997 1.1919 -8.5346 45 1 8.4259 -0.6895 -4.4411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717768504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:04 Heat of formation + Delta-G solvation = -6.604059 kcal Electronic energy + Delta-G solvation = -28271.281793 eV Core-core repulsion = 24254.083075 eV Total energy + Delta-G solvation = -4017.198718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.88608 -39.51063 -38.71233 -37.28301 -35.12138 -33.92686 -33.51111 -32.53535 -31.53497 -31.18474 -29.53487 -28.83699 -25.99674 -24.53844 -24.21768 -23.31771 -22.35675 -21.85842 -20.36025 -20.09496 -18.48511 -17.83654 -17.13689 -16.91004 -16.78208 -16.67418 -15.65293 -15.48265 -15.27132 -14.74863 -14.69079 -14.39293 -14.12254 -14.04983 -13.96097 -13.60231 -13.33723 -13.18145 -13.14253 -13.01516 -12.85942 -12.52292 -12.40656 -11.71026 -11.66479 -11.33429 -11.05051 -10.89245 -10.76359 -10.53072 -10.24269 -10.13502 -9.75976 -9.67954 -9.56166 -9.48561 -9.30956 -9.03912 -8.83762 -8.47634 -7.39238 -5.86043 -3.23051 0.18612 0.67289 1.04791 1.50926 2.85817 3.24086 3.34448 3.40266 3.44284 3.44354 3.83147 4.02933 4.24031 4.43992 4.52901 4.57176 4.58948 4.63410 4.74377 4.77621 4.86056 4.99592 5.07818 5.16186 5.20575 5.25363 5.33772 5.42062 5.58066 5.66866 5.71487 5.75716 5.84214 5.86644 5.88237 6.06439 6.14753 6.15339 6.24157 6.31624 6.33911 6.54772 6.60029 6.65732 7.63594 7.68651 7.86859 8.07082 8.28330 8.32839 9.10206 9.82823 10.02322 11.31456 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014312 B = 0.002618 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.949786 B =10690.652499 C =11948.207074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.012 3.988 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.253 4.253 8 H 0.091 0.909 9 N -0.739 5.739 10 C 0.171 3.829 11 H 0.076 0.924 12 C 0.060 3.940 13 O -0.565 6.565 14 C 0.115 3.885 15 N -0.708 5.708 16 C 0.559 3.441 17 O -0.544 6.544 18 C -0.178 4.178 19 C 0.139 3.861 20 N -0.478 5.478 21 C 0.129 3.871 22 C -0.110 4.110 23 C -0.039 4.039 24 C -0.109 4.109 25 C -0.116 4.116 26 C -0.119 4.119 27 C -0.117 4.117 28 C -0.110 4.110 29 C -0.011 4.011 30 H 0.261 0.739 31 H 0.366 0.634 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.367 0.633 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.409 0.591 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.826 -1.788 -14.542 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.185 4.185 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.203 1.203 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.109 0.891 9 N -0.382 5.382 10 C 0.060 3.940 11 H 0.094 0.906 12 C -0.022 4.022 13 O -0.369 6.369 14 C -0.009 4.009 15 N -0.360 5.360 16 C 0.345 3.655 17 O -0.423 6.423 18 C -0.183 4.183 19 C -0.019 4.019 20 N -0.185 5.185 21 C -0.029 4.029 22 C -0.112 4.112 23 C -0.039 4.039 24 C -0.127 4.127 25 C -0.134 4.134 26 C -0.137 4.137 27 C -0.135 4.135 28 C -0.128 4.128 29 C -0.037 4.037 30 H 0.071 0.929 31 H 0.199 0.801 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.212 0.788 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.246 0.754 38 H 0.184 0.816 39 H 0.179 0.821 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 18.469 -1.540 -15.095 23.903 hybrid contribution 0.817 0.841 0.883 1.467 sum 19.286 -0.699 -14.213 23.967 Atomic orbital electron populations 1.69697 1.05121 1.26025 1.56711 1.24641 0.95146 0.97192 1.01492 0.86588 0.79103 0.84994 0.77983 1.21044 1.20328 1.21750 1.19030 0.80335 0.94711 1.44138 0.89095 1.42743 1.03928 1.01759 1.89799 1.20584 0.90358 0.90672 0.92377 0.90641 1.22990 0.93866 0.90447 0.94868 1.86515 1.72177 1.52000 1.26217 1.21670 0.98642 0.98448 0.82137 1.45957 1.09236 1.62490 1.18298 1.17955 0.84803 0.78535 0.84215 1.90747 1.25410 1.53980 1.72199 1.21028 0.95216 1.05204 0.96837 1.23249 0.96240 0.90937 0.91469 1.67726 1.33829 1.11378 1.05558 1.23121 0.87044 0.93842 0.98881 1.19719 0.94332 1.02195 0.94925 1.18587 0.91876 0.99573 0.93901 1.21310 0.91693 0.99581 1.00117 1.21121 0.98915 0.98920 0.94419 1.21256 0.97195 0.98963 0.96300 1.21102 0.92498 1.00054 0.99829 1.21229 0.99466 0.98662 0.93430 1.21764 0.99456 0.91113 0.91345 0.92919 0.80063 0.92679 0.95063 0.78813 0.90327 0.91344 0.75389 0.81607 0.82099 0.85449 0.85668 0.85926 0.85668 0.85481 0.83317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.06 13.97 55.49 0.78 -27.28 16 2 C 0.01 0.33 5.50 -17.43 -0.10 0.24 16 3 Si 0.88 21.86 27.74 -169.99 -4.72 17.14 16 4 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.28 -6.51 6.51 56.52 0.37 -6.14 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.25 -6.59 10.41 -15.06 -0.16 -6.75 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 9 N -0.74 -16.15 4.31 -53.43 -0.23 -16.38 16 10 C 0.17 2.99 2.84 -67.93 -0.19 2.80 16 11 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 12 C 0.06 0.95 6.86 37.16 0.25 1.20 16 13 O -0.57 -9.16 12.64 -35.23 -0.45 -9.61 16 14 C 0.12 1.87 5.12 -4.05 -0.02 1.85 16 15 N -0.71 -11.24 5.34 -61.25 -0.33 -11.57 16 16 C 0.56 9.04 7.78 -12.32 -0.10 8.94 16 17 O -0.54 -10.07 16.41 5.33 0.09 -9.98 16 18 C -0.18 -2.52 5.89 -104.86 -0.62 -3.14 16 19 C 0.14 1.93 10.71 -17.10 -0.18 1.75 16 20 N -0.48 -6.56 10.33 -12.64 -0.13 -6.69 16 21 C 0.13 1.46 10.59 -17.12 -0.18 1.28 16 22 C -0.11 -1.24 5.89 -104.80 -0.62 -1.85 16 23 C -0.04 -0.38 5.88 -104.90 -0.62 -1.00 16 24 C -0.11 -1.01 9.44 -39.26 -0.37 -1.38 16 25 C -0.12 -0.90 10.03 -39.63 -0.40 -1.30 16 26 C -0.12 -0.85 10.04 -39.52 -0.40 -1.24 16 27 C -0.12 -0.84 10.03 -39.63 -0.40 -1.24 16 28 C -0.11 -0.91 9.44 -39.25 -0.37 -1.28 16 29 C -0.01 -0.14 9.07 -38.53 -0.35 -0.48 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 31 H 0.37 8.35 5.65 -40.82 -0.23 8.12 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.37 4.19 9.12 45.56 0.42 4.61 16 35 H 0.08 1.42 7.39 -51.92 -0.38 1.04 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.41 6.36 6.20 -40.82 -0.25 6.11 16 38 H 0.17 2.20 6.41 -52.48 -0.34 1.86 16 39 H 0.16 1.33 6.21 -52.49 -0.33 1.01 16 40 H 0.13 1.09 6.27 -52.48 -0.33 0.76 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 43 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.13 0.81 6.23 -52.48 -0.33 0.48 16 45 H 0.15 1.76 5.99 -52.49 -0.31 1.44 16 LS Contribution 379.50 15.07 5.72 5.72 Total: -1.00 -33.96 379.50 -8.71 -42.66 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -4.63 Total: 17.58 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -4.81 Total: -1.60 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: 0.09 Total: -61.92 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.36 Total: -19.58 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.14 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.96 -8.71 -42.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717768504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.058 kcal (2) G-P(sol) polarization free energy of solvation -33.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds