Wall clock time and date at job start Sat Apr 11 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99980 * 2 1 4 4 H 1.48503 * 109.47532 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47461 * 300.00674 * 3 2 1 6 6 H 1.48509 * 109.47144 * 60.00401 * 3 2 1 7 7 C 1.38811 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00160 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00225 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47371 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47067 * 64.99570 * 11 10 9 13 13 N 1.46496 * 109.47035 * 305.00232 * 11 10 9 14 14 C 1.34783 * 120.00198 * 154.99692 * 13 11 10 15 15 O 1.21491 * 119.99852 * 0.02562 * 14 13 11 16 16 C 1.48344 * 120.00092 * 179.97438 * 14 13 11 17 17 C 1.41917 * 126.84145 * 179.71633 * 16 14 13 18 18 C 1.36713 * 103.81500 * 179.85662 * 17 16 14 19 19 C 1.47854 * 126.82109 * 180.12218 * 18 17 16 20 20 C 1.39567 * 120.13924 * 0.02919 * 19 18 17 21 21 C 1.37961 * 119.84913 * 179.76584 * 20 19 18 22 22 C 1.38349 * 120.14575 * 0.50488 * 21 20 19 23 23 C 1.38354 * 120.29436 * 359.74717 * 22 21 20 24 24 C 1.37968 * 120.14128 * 359.97438 * 23 22 21 25 25 O 1.34464 * 106.36478 * 0.39617 * 18 17 16 26 26 N 1.20876 * 111.73965 * 359.72954 * 25 18 17 27 27 C 1.52996 * 109.47365 * 184.99702 * 11 10 9 28 28 C 1.53002 * 117.49888 * 116.25530 * 27 11 10 29 29 C 1.53000 * 117.50107 * 184.91292 * 27 11 10 30 30 H 0.96996 * 120.00274 * 359.97438 * 1 2 3 31 31 H 0.96997 * 119.99582 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.47199 * 59.99799 * 10 9 7 33 33 H 1.09003 * 109.47159 * 300.00101 * 10 9 7 34 34 H 0.97000 * 120.00252 * 334.99645 * 13 11 10 35 35 H 1.07995 * 128.09219 * 359.97438 * 17 16 14 36 36 H 1.07998 * 120.07266 * 359.97438 * 20 19 18 37 37 H 1.08003 * 119.92385 * 180.25348 * 21 20 19 38 38 H 1.08003 * 119.85501 * 179.72094 * 22 21 20 39 39 H 1.07995 * 119.93059 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.07602 * 180.02562 * 24 23 22 41 41 H 1.09002 * 115.54951 * 330.58504 * 27 11 10 42 42 H 1.09000 * 117.49996 * 215.00804 * 28 27 11 43 43 H 1.08999 * 117.49664 * 0.02562 * 28 27 11 44 44 H 1.09008 * 117.49673 * 359.97438 * 29 27 11 45 45 H 1.08999 * 117.49959 * 144.99502 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.4973 -4.8139 -0.9310 13 7 0.1449 -4.6758 1.1318 14 6 -1.0797 -5.2367 1.0811 15 8 -1.4211 -5.8620 0.0970 16 6 -2.0101 -5.0915 2.2273 17 6 -3.3261 -5.6134 2.3265 18 6 -3.7457 -5.2080 3.5629 19 6 -5.0577 -5.4819 4.1872 20 6 -6.0183 -6.2267 3.5014 21 6 -7.2387 -6.4829 4.0916 22 6 -7.5151 -5.9944 5.3561 23 6 -6.5692 -5.2509 6.0393 24 6 -5.3427 -4.9924 5.4627 25 8 -2.7306 -4.5055 4.0960 26 7 -1.7826 -4.4508 3.3480 27 6 1.8248 -6.1411 0.1258 28 6 1.5767 -6.9828 1.3791 29 6 1.0141 -7.4351 0.0293 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6848 -3.7145 0.8894 33 1 2.6848 -3.7145 -0.8905 34 1 0.4176 -4.1769 1.9177 35 1 -3.8684 -6.1962 1.5968 36 1 -5.8055 -6.6045 2.5123 37 1 -7.9814 -7.0626 3.5636 38 1 -8.4737 -6.1939 5.8119 39 1 -6.7910 -4.8728 7.0262 40 1 -4.6049 -4.4123 5.9971 41 1 2.8315 -6.1456 -0.2923 42 1 2.4201 -7.5409 1.7857 43 1 0.8710 -6.5953 2.1140 44 1 -0.0615 -7.3450 -0.1232 45 1 1.4874 -8.2908 -0.4522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723312018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:09 Heat of formation + Delta-G solvation = 96.886674 kcal Electronic energy + Delta-G solvation = -28621.157591 eV Core-core repulsion = 24608.446568 eV Total energy + Delta-G solvation = -4012.711023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.08777 -40.00070 -39.42011 -37.20661 -34.94342 -34.18490 -33.65400 -33.04522 -31.35822 -31.12423 -29.77023 -28.29856 -25.02138 -24.02007 -23.96589 -22.86088 -22.25001 -22.10053 -21.50581 -20.30734 -19.70348 -18.54889 -17.85469 -17.29018 -16.79549 -16.63929 -15.99862 -15.78963 -15.52042 -15.19920 -14.78933 -14.32516 -14.15762 -13.85963 -13.63392 -13.53877 -13.51239 -13.30404 -13.25340 -12.89033 -12.17774 -11.93250 -11.69289 -11.58448 -11.42913 -11.36261 -11.25655 -10.90633 -10.84105 -10.57154 -10.45560 -10.30986 -10.12389 -9.93245 -9.80170 -9.61640 -9.35673 -8.93361 -8.77976 -8.65292 -6.97158 -5.78015 -3.08357 0.32166 1.00880 1.28087 1.90260 2.68440 3.08262 3.29215 3.42658 3.46575 3.47945 3.50477 3.93651 4.02886 4.25713 4.52797 4.55514 4.58825 4.71172 4.85568 4.88728 4.96611 5.02903 5.13161 5.17220 5.18240 5.27547 5.46848 5.53737 5.54376 5.62828 5.70303 5.74857 5.82726 5.95641 5.99202 6.04107 6.05987 6.10517 6.20015 6.29038 6.42235 6.47664 6.51415 6.64132 6.83054 7.61514 7.68356 7.96904 8.28465 8.39194 9.51034 10.05994 10.41089 11.44317 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009990 B = 0.002888 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.142900 B = 9692.803214 C =11835.760763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.167 3.833 12 H 0.095 0.905 13 N -0.689 5.689 14 C 0.600 3.400 15 O -0.526 6.526 16 C -0.019 4.019 17 C -0.163 4.163 18 C 0.001 3.999 19 C -0.019 4.019 20 C -0.090 4.090 21 C -0.118 4.118 22 C -0.108 4.108 23 C -0.118 4.118 24 C -0.094 4.094 25 O 0.132 5.868 26 N -0.318 5.318 27 C -0.161 4.161 28 C -0.178 4.178 29 C -0.185 4.185 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.027 0.973 33 H 0.038 0.962 34 H 0.412 0.588 35 H 0.182 0.818 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.113 0.887 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.115 0.885 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.295 -17.216 10.850 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.063 3.937 12 H 0.113 0.887 13 N -0.340 5.340 14 C 0.384 3.616 15 O -0.401 6.401 16 C -0.177 4.177 17 C -0.185 4.185 18 C -0.061 4.061 19 C -0.020 4.020 20 C -0.108 4.108 21 C -0.136 4.136 22 C -0.127 4.127 23 C -0.136 4.136 24 C -0.112 4.112 25 O 0.053 5.947 26 N -0.016 5.016 27 C -0.180 4.180 28 C -0.215 4.215 29 C -0.222 4.222 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.248 0.752 35 H 0.200 0.800 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.131 0.869 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.133 0.867 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.240 -16.839 10.511 22.812 hybrid contribution -0.170 0.876 -0.080 0.896 sum -11.410 -15.963 10.431 22.222 Atomic orbital electron populations 1.69680 1.05134 1.25594 1.57403 1.24765 0.95514 0.97768 1.02789 0.86107 0.78760 0.84052 0.77176 1.20527 1.21859 1.21852 1.19245 0.91057 0.83962 1.43068 0.91004 1.42355 1.05981 0.99757 1.89608 1.20932 0.92964 0.84967 0.99176 1.20881 0.90147 0.93265 0.89420 0.88720 1.45876 1.13667 1.53156 1.21301 1.16801 0.80963 0.79515 0.84350 1.90708 1.75968 1.41804 1.31656 1.23429 0.96821 1.01950 0.95512 1.22558 0.94260 1.04570 0.97156 1.22435 0.91448 0.98546 0.93701 1.17596 0.88726 1.00884 0.94773 1.21160 0.92743 0.97067 0.99876 1.21084 0.96599 1.00278 0.95617 1.21347 0.99428 0.97002 0.94887 1.21129 0.93320 0.98814 1.00358 1.21349 0.97555 0.98426 0.93873 1.84878 1.17502 1.54167 1.38142 1.74215 1.07896 1.16711 1.02776 1.22710 1.00523 0.91758 1.03034 1.22893 1.03277 1.03821 0.91504 1.23318 1.01912 0.97149 0.99795 0.93532 0.78060 0.95473 0.94464 0.75192 0.80031 0.85072 0.85198 0.85608 0.85287 0.84830 0.86936 0.89306 0.89289 0.86696 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.52 5.43 -59.91 -0.33 -18.85 16 10 C 0.15 2.93 5.78 -4.04 -0.02 2.91 16 11 C 0.17 2.90 2.57 -67.94 -0.17 2.72 16 12 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 13 N -0.69 -11.99 3.17 -54.60 -0.17 -12.16 16 14 C 0.60 10.52 6.54 -12.10 -0.08 10.44 16 15 O -0.53 -9.89 13.92 5.37 0.07 -9.81 16 16 C -0.02 -0.30 7.18 -82.62 -0.59 -0.89 16 17 C -0.16 -2.15 10.34 -38.73 -0.40 -2.55 16 18 C 0.00 0.02 7.15 -36.20 -0.26 -0.24 16 19 C -0.02 -0.18 5.87 -104.97 -0.62 -0.80 16 20 C -0.09 -0.74 9.58 -39.19 -0.38 -1.11 16 21 C -0.12 -0.79 10.03 -39.64 -0.40 -1.19 16 22 C -0.11 -0.68 10.04 -39.50 -0.40 -1.08 16 23 C -0.12 -0.82 10.03 -39.64 -0.40 -1.21 16 24 C -0.09 -0.81 9.73 -39.19 -0.38 -1.19 16 25 O 0.13 1.84 11.01 16.05 0.18 2.01 16 26 N -0.32 -5.11 11.82 33.35 0.39 -4.72 16 27 C -0.16 -2.32 5.73 -90.62 -0.52 -2.84 16 28 C -0.18 -2.40 9.69 -26.69 -0.26 -2.66 16 29 C -0.19 -2.58 9.85 -26.70 -0.26 -2.84 16 30 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.39 10.48 7.33 -40.82 -0.30 10.18 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.41 7.35 8.36 -40.82 -0.34 7.01 16 35 H 0.18 1.97 7.46 -52.49 -0.39 1.58 16 36 H 0.13 0.90 7.15 -52.49 -0.38 0.52 16 37 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 38 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 39 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.13 1.04 7.96 -52.49 -0.42 0.62 16 41 H 0.11 1.47 8.08 -51.93 -0.42 1.05 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.29 6.41 -51.93 -0.33 0.96 16 44 H 0.11 1.84 5.25 -51.92 -0.27 1.56 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 383.35 15.07 5.78 5.78 Total: -1.00 -32.73 383.35 -9.51 -42.24 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -5.75 Total: 15.65 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -5.38 Total: -9.91 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: 0.62 Total: -63.53 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.25 Total: -7.80 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.73 -9.51 -42.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723312018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.122 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds