Wall clock time and date at job start Sat Apr 11 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99980 * 2 1 4 4 H 1.48503 * 109.47532 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47461 * 300.00674 * 3 2 1 6 6 H 1.48509 * 109.47144 * 60.00401 * 3 2 1 7 7 C 1.38811 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00160 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00225 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47371 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47067 * 64.99570 * 11 10 9 13 13 N 1.46496 * 109.47035 * 305.00232 * 11 10 9 14 14 C 1.34783 * 120.00198 * 154.99692 * 13 11 10 15 15 O 1.21491 * 119.99852 * 0.02562 * 14 13 11 16 16 C 1.48344 * 120.00092 * 179.97438 * 14 13 11 17 17 C 1.41917 * 126.84145 * 179.71633 * 16 14 13 18 18 C 1.36713 * 103.81500 * 179.85662 * 17 16 14 19 19 C 1.47854 * 126.82109 * 180.12218 * 18 17 16 20 20 C 1.39567 * 120.13924 * 0.02919 * 19 18 17 21 21 C 1.37961 * 119.84913 * 179.76584 * 20 19 18 22 22 C 1.38349 * 120.14575 * 0.50488 * 21 20 19 23 23 C 1.38354 * 120.29436 * 359.74717 * 22 21 20 24 24 C 1.37968 * 120.14128 * 359.97438 * 23 22 21 25 25 O 1.34464 * 106.36478 * 0.39617 * 18 17 16 26 26 N 1.20876 * 111.73965 * 359.72954 * 25 18 17 27 27 C 1.52996 * 109.47365 * 184.99702 * 11 10 9 28 28 C 1.53002 * 117.49888 * 116.25530 * 27 11 10 29 29 C 1.53000 * 117.50107 * 184.91292 * 27 11 10 30 30 H 0.96996 * 120.00274 * 359.97438 * 1 2 3 31 31 H 0.96997 * 119.99582 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.47199 * 59.99799 * 10 9 7 33 33 H 1.09003 * 109.47159 * 300.00101 * 10 9 7 34 34 H 0.97000 * 120.00252 * 334.99645 * 13 11 10 35 35 H 1.07995 * 128.09219 * 359.97438 * 17 16 14 36 36 H 1.07998 * 120.07266 * 359.97438 * 20 19 18 37 37 H 1.08003 * 119.92385 * 180.25348 * 21 20 19 38 38 H 1.08003 * 119.85501 * 179.72094 * 22 21 20 39 39 H 1.07995 * 119.93059 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.07602 * 180.02562 * 24 23 22 41 41 H 1.09002 * 115.54951 * 330.58504 * 27 11 10 42 42 H 1.09000 * 117.49996 * 215.00804 * 28 27 11 43 43 H 1.08999 * 117.49664 * 0.02562 * 28 27 11 44 44 H 1.09008 * 117.49673 * 359.97438 * 29 27 11 45 45 H 1.08999 * 117.49959 * 144.99502 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.4973 -4.8139 -0.9310 13 7 0.1449 -4.6758 1.1318 14 6 -1.0797 -5.2367 1.0811 15 8 -1.4211 -5.8620 0.0970 16 6 -2.0101 -5.0915 2.2273 17 6 -3.3261 -5.6134 2.3265 18 6 -3.7457 -5.2080 3.5629 19 6 -5.0577 -5.4819 4.1872 20 6 -6.0183 -6.2267 3.5014 21 6 -7.2387 -6.4829 4.0916 22 6 -7.5151 -5.9944 5.3561 23 6 -6.5692 -5.2509 6.0393 24 6 -5.3427 -4.9924 5.4627 25 8 -2.7306 -4.5055 4.0960 26 7 -1.7826 -4.4508 3.3480 27 6 1.8248 -6.1411 0.1258 28 6 1.5767 -6.9828 1.3791 29 6 1.0141 -7.4351 0.0293 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6848 -3.7145 0.8894 33 1 2.6848 -3.7145 -0.8905 34 1 0.4176 -4.1769 1.9177 35 1 -3.8684 -6.1962 1.5968 36 1 -5.8055 -6.6045 2.5123 37 1 -7.9814 -7.0626 3.5636 38 1 -8.4737 -6.1939 5.8119 39 1 -6.7910 -4.8728 7.0262 40 1 -4.6049 -4.4123 5.9971 41 1 2.8315 -6.1456 -0.2923 42 1 2.4201 -7.5409 1.7857 43 1 0.8710 -6.5953 2.1140 44 1 -0.0615 -7.3450 -0.1232 45 1 1.4874 -8.2908 -0.4522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723312018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:08 Heat of formation + Delta-G solvation = 77.849838 kcal Electronic energy + Delta-G solvation = -28621.983090 eV Core-core repulsion = 24608.446568 eV Total energy + Delta-G solvation = -4013.536522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.22234 -41.36742 -40.01018 -38.53685 -36.62234 -35.35324 -34.95983 -34.22435 -33.02957 -31.90387 -30.61303 -29.97673 -26.46434 -25.68911 -24.85151 -23.73168 -23.47118 -23.01758 -22.90728 -21.46547 -21.02041 -19.57300 -19.17552 -18.99183 -18.07568 -17.43912 -17.28546 -17.12791 -16.65877 -16.32286 -15.87548 -15.70169 -15.27364 -15.19748 -15.09599 -14.87019 -14.51848 -14.33436 -14.28721 -13.93756 -13.76149 -13.19576 -13.00116 -12.84426 -12.77125 -12.72131 -12.42873 -12.27528 -12.08016 -11.97073 -11.88309 -11.67280 -11.56787 -11.40038 -11.18265 -11.03628 -10.88397 -10.17810 -9.91861 -9.41961 -9.06563 -7.97955 -5.28461 -0.48601 0.10129 0.45131 1.06300 1.45392 1.46297 1.56520 1.66488 1.82169 1.98396 2.52461 2.75331 2.86743 2.89407 3.26894 3.36918 3.55430 3.71840 3.87585 3.95838 4.00331 4.02404 4.06803 4.11296 4.12206 4.31280 4.34888 4.42745 4.51259 4.53704 4.63317 4.69544 4.76273 4.80194 4.94410 5.00251 5.04619 5.10970 5.19068 5.32709 5.38190 5.44267 5.47511 5.49094 5.56717 5.98198 6.21695 6.22679 6.79970 6.93840 7.29045 8.01217 8.24888 9.25451 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009990 B = 0.002888 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.142900 B = 9692.803214 C =11835.760763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.243 4.243 8 H 0.082 0.918 9 N -0.745 5.745 10 C 0.149 3.851 11 C 0.175 3.825 12 H 0.072 0.928 13 N -0.689 5.689 14 C 0.599 3.401 15 O -0.543 6.543 16 C -0.040 4.040 17 C -0.174 4.174 18 C 0.020 3.980 19 C -0.048 4.048 20 C -0.095 4.095 21 C -0.121 4.121 22 C -0.101 4.101 23 C -0.122 4.122 24 C -0.104 4.104 25 O 0.132 5.868 26 N -0.343 5.343 27 C -0.164 4.164 28 C -0.169 4.169 29 C -0.181 4.181 30 H 0.250 0.750 31 H 0.372 0.628 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.409 0.591 35 H 0.201 0.799 36 H 0.140 0.860 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.113 0.887 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.670 -18.470 11.859 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.374 4.374 8 H 0.100 0.900 9 N -0.388 5.388 10 C 0.023 3.977 11 C 0.071 3.929 12 H 0.090 0.910 13 N -0.339 5.339 14 C 0.383 3.617 15 O -0.421 6.421 16 C -0.197 4.197 17 C -0.196 4.196 18 C -0.043 4.043 19 C -0.049 4.049 20 C -0.114 4.114 21 C -0.138 4.138 22 C -0.119 4.119 23 C -0.140 4.140 24 C -0.123 4.123 25 O 0.053 5.947 26 N -0.042 5.042 27 C -0.184 4.184 28 C -0.206 4.206 29 C -0.218 4.218 30 H 0.058 0.942 31 H 0.204 0.796 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.244 0.756 35 H 0.218 0.782 36 H 0.158 0.842 37 H 0.173 0.827 38 H 0.173 0.827 39 H 0.170 0.830 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.131 0.869 43 H 0.093 0.907 44 H 0.110 0.890 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.566 -18.127 11.520 24.394 hybrid contribution -0.186 1.176 -0.312 1.230 sum -11.752 -16.952 11.208 23.475 Atomic orbital electron populations 1.69851 1.06801 1.25934 1.59501 1.25618 0.96346 1.01313 1.03628 0.85035 0.78350 0.79611 0.76502 1.18670 1.22220 1.22184 1.19682 0.91660 0.84976 1.41100 0.90029 1.42547 1.05581 1.01102 1.89574 1.21076 0.93297 0.83615 0.99759 1.20707 0.89563 0.94075 0.88544 0.90985 1.45867 1.13892 1.53128 1.21035 1.16990 0.81008 0.79074 0.84604 1.90686 1.76296 1.42622 1.32453 1.23420 0.97800 1.03181 0.95328 1.22769 0.93367 1.05370 0.98115 1.22890 0.91615 0.96586 0.93171 1.17732 0.88060 1.03241 0.95866 1.21393 0.93031 0.96608 1.00332 1.21443 0.96342 1.00078 0.95962 1.21776 1.00266 0.95336 0.94518 1.21443 0.92591 0.98617 1.01356 1.21514 0.98598 0.98572 0.93600 1.84828 1.17707 1.54265 1.37870 1.74192 1.09027 1.17739 1.03200 1.22648 1.01085 0.90240 1.04395 1.22933 1.03561 1.03191 0.90903 1.23285 1.00724 0.97476 1.00322 0.94164 0.79629 0.94391 0.93436 0.75583 0.78234 0.84233 0.82663 0.82711 0.83045 0.84830 0.84857 0.86855 0.90737 0.88980 0.87086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.07 13.06 21.65 0.28 -60.79 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 3 Si 0.98 46.88 29.55 68.60 2.03 48.90 16 4 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 6 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 7 C -0.24 -13.61 9.99 84.03 0.84 -12.77 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 9 N -0.75 -38.34 5.43 -343.46 -1.87 -40.20 16 10 C 0.15 5.90 5.78 86.38 0.50 6.40 16 11 C 0.18 6.17 2.57 44.99 0.12 6.28 16 12 H 0.07 2.86 7.58 -2.39 -0.02 2.84 16 13 N -0.69 -24.93 3.17 -444.94 -1.41 -26.34 16 14 C 0.60 22.01 6.54 86.93 0.57 22.57 16 15 O -0.54 -21.33 13.92 -3.69 -0.05 -21.38 16 16 C -0.04 -1.35 7.18 42.86 0.31 -1.04 16 17 C -0.17 -4.73 10.34 22.82 0.24 -4.49 16 18 C 0.02 0.50 7.15 24.46 0.17 0.68 16 19 C -0.05 -0.92 5.87 -20.09 -0.12 -1.04 16 20 C -0.10 -1.44 9.58 22.52 0.22 -1.22 16 21 C -0.12 -1.30 10.03 22.23 0.22 -1.07 16 22 C -0.10 -0.96 10.04 22.32 0.22 -0.74 16 23 C -0.12 -1.42 10.03 22.23 0.22 -1.20 16 24 C -0.10 -1.72 9.73 22.53 0.22 -1.50 16 25 O 0.13 3.85 11.01 67.61 0.74 4.60 16 26 N -0.34 -11.62 11.82 -49.00 -0.58 -12.20 16 27 C -0.16 -4.57 5.73 -10.79 -0.06 -4.63 16 28 C -0.17 -4.35 9.69 30.62 0.30 -4.05 16 29 C -0.18 -4.85 9.85 30.62 0.30 -4.55 16 30 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.37 20.97 7.33 -92.71 -0.68 20.29 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 34 H 0.41 15.27 8.36 -92.71 -0.77 14.49 16 35 H 0.20 4.42 7.46 -2.91 -0.02 4.40 16 36 H 0.14 1.77 7.15 -2.91 -0.02 1.75 16 37 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 38 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 39 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 40 H 0.13 2.08 7.96 -2.91 -0.02 2.06 16 41 H 0.13 3.17 8.08 -2.39 -0.02 3.15 16 42 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.07 2.16 6.41 -2.39 -0.02 2.15 16 44 H 0.09 2.97 5.25 -2.38 -0.01 2.95 16 45 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -72.02 383.35 3.47 -68.55 By element: Atomic # 1 Polarization: 45.68 SS G_CDS: -0.41 Total: 45.27 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 4.73 Total: -6.41 kcal Atomic # 7 Polarization: -135.96 SS G_CDS: -3.58 Total: -139.53 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.69 Total: -16.78 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.90 kcal Total: -72.02 3.47 -68.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723312018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.401 kcal (2) G-P(sol) polarization free energy of solvation -72.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds