Wall clock time and date at job start Sat Apr 11 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47328 * 308.65207 * 3 2 1 5 5 N 1.46495 * 109.47203 * 185.76855 * 4 3 2 6 6 C 1.46504 * 119.99953 * 278.13384 * 5 4 3 7 7 C 1.50710 * 109.47038 * 269.99774 * 6 5 4 8 8 H 1.08001 * 119.99436 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00024 * 179.97438 * 7 6 5 10 10 N 1.31507 * 119.99838 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 119.99818 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47344 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47449 * 120.00211 * 11 9 7 14 14 H 1.48499 * 109.46979 * 240.00118 * 11 9 7 15 15 C 1.34768 * 120.00396 * 98.12839 * 5 4 3 16 16 O 1.21551 * 120.00420 * 186.49281 * 15 5 4 17 17 C 1.47867 * 119.99783 * 6.49405 * 15 5 4 18 18 C 1.39617 * 120.10909 * 319.89974 * 17 15 5 19 19 C 1.37977 * 119.99626 * 180.02562 * 18 17 15 20 20 C 1.38253 * 120.22030 * 359.73567 * 19 18 17 21 21 C 1.38943 * 120.22483 * 0.51588 * 20 19 18 22 22 N 1.39956 * 120.00107 * 179.76190 * 21 20 19 23 23 C 1.46765 * 124.35076 * 354.02299 * 22 21 20 24 24 C 1.54475 * 105.47296 * 162.98085 * 23 22 21 25 25 C 1.54632 * 101.76339 * 25.42003 * 24 23 22 26 26 C 1.34423 * 124.34980 * 174.02675 * 22 21 20 27 27 O 1.21285 * 124.93832 * 0.67007 * 26 22 21 28 28 C 1.38633 * 119.99971 * 359.49385 * 21 20 19 29 29 H 1.09005 * 109.46785 * 188.65220 * 3 2 1 30 30 H 1.09001 * 109.47072 * 68.65951 * 3 2 1 31 31 H 1.09004 * 109.46636 * 65.76686 * 4 3 2 32 32 H 1.08998 * 109.47104 * 305.77389 * 4 3 2 33 33 H 1.09006 * 109.47410 * 29.99631 * 6 5 4 34 34 H 1.09002 * 109.47454 * 149.99994 * 6 5 4 35 35 H 0.97006 * 120.00033 * 180.02562 * 10 9 7 36 36 H 1.08000 * 120.00057 * 359.97438 * 18 17 15 37 37 H 1.07996 * 119.89141 * 180.02562 * 19 18 17 38 38 H 1.08005 * 119.89030 * 180.26107 * 20 19 18 39 39 H 1.09001 * 110.23913 * 43.98474 * 23 22 21 40 40 H 1.08994 * 110.24514 * 281.98351 * 23 22 21 41 41 H 1.08998 * 110.97536 * 267.29930 * 24 23 22 42 42 H 1.08999 * 111.00097 * 143.55015 * 24 23 22 43 43 H 1.09001 * 110.48374 * 216.51606 * 25 24 23 44 44 H 1.09003 * 110.48321 * 93.88284 * 25 24 23 45 45 H 1.08007 * 120.11317 * 180.22850 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1185 -0.9001 1.1265 5 7 4.5768 -0.7924 1.2150 6 6 5.4251 -1.5714 0.3095 7 6 5.7378 -2.9054 0.9373 8 1 5.3437 -3.1486 1.9130 9 6 6.5261 -3.8155 0.2657 10 7 7.0056 -3.5194 -0.9226 11 14 6.9131 -5.4691 1.0435 12 1 6.2593 -5.5555 2.3741 13 1 6.4055 -6.5578 0.1705 14 1 8.3827 -5.6085 1.2048 15 6 5.1381 0.0232 2.1292 16 8 6.3402 0.2037 2.1263 17 6 4.2916 0.6987 3.1361 18 6 3.0493 1.2202 2.7703 19 6 2.2615 1.8505 3.7116 20 6 2.6956 1.9633 5.0194 21 6 3.9327 1.4522 5.3923 22 7 4.3696 1.5734 6.7164 23 6 3.6606 2.3278 7.7566 24 6 4.2456 1.8308 9.0972 25 6 5.6482 1.3421 8.6671 26 6 5.4927 1.0140 7.1987 27 8 6.2707 0.3474 6.5496 28 6 4.7317 0.8173 4.4540 29 1 2.9709 1.0169 0.1546 30 1 2.9715 -0.3732 -0.9572 31 1 2.8424 -1.9338 0.9184 32 1 2.6731 -0.5882 2.0712 33 1 4.9021 -1.7276 -0.6341 34 1 6.3531 -1.0301 0.1253 35 1 7.5599 -4.1599 -1.3953 36 1 2.7052 1.1310 1.7505 37 1 1.3006 2.2529 3.4269 38 1 2.0728 2.4540 5.7528 39 1 2.5916 2.1193 7.7112 40 1 3.8427 3.3959 7.6384 41 1 3.6533 1.0097 9.5009 42 1 4.3202 2.6460 9.8169 43 1 5.9310 0.4520 9.2292 44 1 6.3864 2.1322 8.8055 45 1 5.6921 0.4161 4.7428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052818255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:19 Heat of formation + Delta-G solvation = 12.206985 kcal Electronic energy + Delta-G solvation = -29292.226631 eV Core-core repulsion = 25275.843621 eV Total energy + Delta-G solvation = -4016.383010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.28013 -39.88054 -37.90895 -36.93878 -36.75830 -35.31302 -33.50003 -32.76446 -31.10391 -30.95130 -29.24552 -28.09189 -27.26792 -24.37414 -23.90952 -23.33533 -22.68115 -21.43094 -20.21442 -18.81725 -17.82198 -17.43026 -17.09132 -16.91073 -16.40303 -15.96096 -15.66658 -15.55786 -14.76067 -14.65840 -14.45721 -14.14431 -14.08355 -13.98707 -13.76545 -13.47866 -13.46367 -13.12617 -12.89923 -12.67447 -12.50304 -12.46776 -12.12106 -11.94934 -11.73293 -11.62395 -11.48602 -11.38686 -11.22456 -10.98406 -10.87277 -10.62940 -10.26580 -10.15831 -9.75124 -9.65875 -9.14441 -8.86048 -8.44181 -8.01347 -7.82063 -6.05835 -4.10163 0.99507 1.30597 2.37369 2.53182 2.72588 2.79940 3.29724 3.31542 3.39875 3.44419 3.62504 3.89450 3.90453 3.99007 4.23846 4.34443 4.45350 4.56735 4.77876 4.82019 4.91780 5.02457 5.03554 5.08305 5.15804 5.20392 5.24193 5.29749 5.34480 5.43181 5.47016 5.50524 5.51862 5.84347 5.88943 6.05393 6.13598 6.30169 6.34248 6.49806 6.85902 6.95470 7.02543 7.38440 7.45720 7.56059 7.85974 7.90982 8.19966 8.25195 8.84244 8.99642 9.55471 11.02336 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009017 B = 0.003781 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.640592 B = 7404.603712 C = 9777.107020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.216 3.784 3 C -0.058 4.058 4 C 0.101 3.899 5 N -0.589 5.589 6 C 0.243 3.757 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.282 1.282 15 C 0.551 3.449 16 O -0.522 6.522 17 C -0.086 4.086 18 C -0.135 4.135 19 C -0.099 4.099 20 C -0.146 4.146 21 C 0.157 3.843 22 N -0.562 5.562 23 C 0.096 3.904 24 C -0.131 4.131 25 C -0.153 4.153 26 C 0.509 3.491 27 O -0.495 6.495 28 C -0.106 4.106 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.038 0.962 34 H 0.050 0.950 35 H 0.263 0.737 36 H 0.139 0.861 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.786 14.592 16.965 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.102 4.102 3 C -0.099 4.099 4 C -0.025 4.025 5 N -0.319 5.319 6 C 0.125 3.875 7 C -0.568 4.568 8 H 0.078 0.922 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.208 1.208 15 C 0.337 3.663 16 O -0.398 6.398 17 C -0.090 4.090 18 C -0.154 4.154 19 C -0.118 4.118 20 C -0.167 4.167 21 C 0.064 3.936 22 N -0.286 5.286 23 C -0.026 4.026 24 C -0.169 4.169 25 C -0.193 4.193 26 C 0.297 3.703 27 O -0.369 6.369 28 C -0.126 4.126 29 H 0.130 0.870 30 H 0.141 0.859 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.157 0.843 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.249 14.220 16.460 24.488 hybrid contribution 0.524 -0.928 0.335 1.117 sum -10.725 13.291 16.794 23.953 Atomic orbital electron populations 1.81201 1.12877 1.08906 1.08877 1.29048 0.95032 0.93046 0.93060 1.20015 0.81503 1.03882 1.04461 1.21706 0.82561 1.00706 0.97491 1.48082 1.05420 1.42769 1.35668 1.19410 0.90470 0.90027 0.87601 1.21479 1.31623 0.99759 1.03977 0.92230 1.24899 0.95405 0.98724 0.94866 1.69928 1.34453 1.35878 1.12947 0.86462 0.78324 0.83433 0.79368 1.19748 1.20967 1.20841 1.18145 0.87429 0.79518 0.81172 1.90787 1.14502 1.62296 1.72225 1.20108 0.94884 0.99655 0.94361 1.21845 0.93621 0.98807 1.01095 1.20829 0.99786 0.98832 0.92325 1.20807 0.94729 1.03859 0.97324 1.17617 0.94084 0.99302 0.82627 1.45785 1.24584 1.49972 1.08280 1.22238 0.97791 0.96379 0.86207 1.22617 0.95414 1.02559 0.96300 1.22344 0.99112 1.04671 0.93137 1.21158 0.80146 0.78614 0.90349 1.90750 1.44712 1.37267 1.64163 1.21674 1.01462 0.98572 0.90915 0.87005 0.85929 0.88871 0.89148 0.94448 0.93220 0.92728 0.84326 0.85310 0.85708 0.89535 0.90087 0.89584 0.88632 0.87436 0.87278 0.81879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.38 18.54 42.15 0.78 -5.60 16 2 C 0.22 2.64 15.18 -20.76 -0.32 2.33 16 3 C -0.06 -0.65 5.05 -29.52 -0.15 -0.80 16 4 C 0.10 1.50 4.83 -4.05 -0.02 1.48 16 5 N -0.59 -11.71 2.46 -176.16 -0.43 -12.15 16 6 C 0.24 5.97 5.22 -5.19 -0.03 5.95 16 7 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 11 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.55 11.64 7.34 -12.32 -0.09 11.55 16 16 O -0.52 -13.43 16.48 5.32 0.09 -13.35 16 17 C -0.09 -1.47 5.29 -104.99 -0.56 -2.03 16 18 C -0.13 -1.76 7.36 -39.16 -0.29 -2.04 16 19 C -0.10 -1.07 10.02 -39.67 -0.40 -1.46 16 20 C -0.15 -1.55 9.41 -39.31 -0.37 -1.92 16 21 C 0.16 2.11 6.59 -83.74 -0.55 1.56 16 22 N -0.56 -6.23 3.14 -112.31 -0.35 -6.59 16 23 C 0.10 0.56 6.51 -3.12 -0.02 0.54 16 24 C -0.13 -0.53 7.18 -25.10 -0.18 -0.71 16 25 C -0.15 -1.05 6.86 -26.74 -0.18 -1.23 16 26 C 0.51 6.43 7.92 -10.86 -0.09 6.35 16 27 O -0.50 -8.87 14.81 5.55 0.08 -8.79 16 28 C -0.11 -1.83 8.88 -38.98 -0.35 -2.18 16 29 H 0.11 1.10 6.59 -51.93 -0.34 0.75 16 30 H 0.12 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 32 H 0.09 1.23 4.68 -51.93 -0.24 0.98 16 33 H 0.04 0.89 8.00 -51.93 -0.42 0.47 16 34 H 0.05 1.39 7.34 -51.93 -0.38 1.01 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.14 1.58 3.07 -52.49 -0.16 1.42 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.13 0.92 6.72 -52.48 -0.35 0.56 16 39 H 0.09 0.38 7.22 -51.93 -0.37 0.01 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.16 3.38 5.24 -52.48 -0.28 3.10 16 LS Contribution 378.02 15.07 5.70 5.70 Total: -1.00 -37.23 378.02 -7.89 -45.13 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.47 Total: -0.09 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -4.00 Total: 4.07 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.73 Total: -49.52 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: 0.17 Total: -22.14 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.23 -7.89 -45.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052818255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.333 kcal (2) G-P(sol) polarization free energy of solvation -37.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds