Wall clock time and date at job start Sat Apr 11 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99864 * 2 1 4 4 H 1.48498 * 109.46877 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.47089 * 120.00138 * 3 2 1 6 6 H 1.48500 * 109.47209 * 240.00175 * 3 2 1 7 7 C 1.38813 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99625 * 185.47589 * 7 2 1 9 9 N 1.36933 * 119.99936 * 5.48571 * 7 2 1 10 10 C 1.46502 * 119.99837 * 185.33453 * 9 7 2 11 11 C 1.53006 * 109.47052 * 174.91771 * 10 9 7 12 12 H 1.09005 * 109.87185 * 54.68242 * 11 10 9 13 13 C 1.54320 * 109.88124 * 293.50713 * 11 10 9 14 14 C 1.55163 * 102.93918 * 218.38979 * 13 11 10 15 15 C 1.54910 * 101.58000 * 35.50161 * 14 13 11 16 16 N 1.47021 * 109.87914 * 175.69664 * 11 10 9 17 17 C 1.34776 * 125.64751 * 298.31819 * 16 11 10 18 18 O 1.21641 * 120.00269 * 5.10473 * 17 16 11 19 19 C 1.47097 * 119.99620 * 185.09985 * 17 16 11 20 20 C 1.42477 * 128.38396 * 299.67192 * 19 17 16 21 21 N 1.29880 * 106.40736 * 179.89857 * 20 19 17 22 22 O 1.20740 * 112.76268 * 0.39841 * 21 20 19 23 23 C 1.34231 * 111.94881 * 359.73833 * 22 21 20 24 24 C 1.47562 * 127.17862 * 179.97438 * 23 22 21 25 25 C 1.39700 * 120.15956 * 172.36972 * 24 23 22 26 26 C 1.37922 * 119.83955 * 179.72041 * 25 24 23 27 27 C 1.38377 * 120.15772 * 0.56065 * 26 25 24 28 28 C 1.38378 * 120.31879 * 359.71047 * 27 26 25 29 29 C 1.37925 * 120.15584 * 0.02562 * 28 27 26 30 30 H 0.97006 * 119.99595 * 174.99892 * 1 2 3 31 31 H 0.97006 * 120.00100 * 5.32152 * 9 7 2 32 32 H 1.08997 * 109.46915 * 294.91520 * 10 9 7 33 33 H 1.08997 * 109.47302 * 54.91726 * 10 9 7 34 34 H 1.09000 * 110.72299 * 336.75105 * 13 11 10 35 35 H 1.09003 * 110.72215 * 100.02461 * 13 11 10 36 36 H 1.08991 * 111.00170 * 277.42418 * 14 13 11 37 37 H 1.09004 * 110.99998 * 153.57620 * 14 13 11 38 38 H 1.08999 * 110.36511 * 204.14961 * 15 14 13 39 39 H 1.09001 * 110.45960 * 81.87608 * 15 14 13 40 40 H 1.07995 * 126.79375 * 0.04360 * 20 19 17 41 41 H 1.08004 * 120.07646 * 359.97438 * 25 24 23 42 42 H 1.08000 * 119.92057 * 180.25006 * 26 25 24 43 43 H 1.08000 * 119.84168 * 179.70171 * 27 26 25 44 44 H 1.07997 * 119.92256 * 180.02562 * 28 27 26 45 45 H 1.08005 * 120.08182 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0866 -1.2042 0.0887 9 7 1.3304 -2.3853 -0.1144 10 6 2.0484 -3.6569 0.0022 11 6 1.0471 -4.8133 -0.0352 12 1 0.4316 -4.7416 -0.9320 13 6 0.1541 -4.7750 1.2228 14 6 -0.0091 -6.2764 1.5788 15 6 1.3803 -6.8408 1.1906 16 7 1.7646 -6.0964 -0.0224 17 6 2.6298 -6.5221 -0.9641 18 8 2.9437 -5.7849 -1.8793 19 6 3.1943 -7.8781 -0.8851 20 6 3.9874 -8.4471 0.1528 21 7 4.2505 -9.6654 -0.2125 22 8 3.7719 -9.9451 -1.2851 23 6 3.0878 -8.9177 -1.8126 24 6 2.3729 -8.8914 -3.1032 25 6 1.5736 -7.7964 -3.4406 26 6 0.9129 -7.7761 -4.6511 27 6 1.0310 -8.8420 -5.5255 28 6 1.8165 -9.9325 -5.1956 29 6 2.4873 -9.9640 -3.9909 30 1 -0.4850 -0.8369 -0.0732 31 1 0.3732 -2.3814 -0.2721 32 1 2.7489 -3.7559 -0.8270 33 1 2.5954 -3.6802 0.9446 34 1 0.6500 -4.2386 2.0317 35 1 -0.8125 -4.3251 0.9960 36 1 -0.7978 -6.7356 0.9829 37 1 -0.2002 -6.4067 2.6440 38 1 1.3099 -7.9070 0.9751 39 1 2.1005 -6.6627 1.9892 40 1 4.3047 -7.9621 1.0641 41 1 1.4766 -6.9660 -2.7568 42 1 0.2979 -6.9284 -4.9149 43 1 0.5076 -8.8229 -6.4700 44 1 1.9045 -10.7607 -5.8830 45 1 3.0996 -10.8159 -3.7344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723959278.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:36 Heat of formation + Delta-G solvation = 57.725050 kcal Electronic energy + Delta-G solvation = -29567.327377 eV Core-core repulsion = 25552.918178 eV Total energy + Delta-G solvation = -4014.409198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.13428 -41.48255 -40.10981 -38.81360 -36.79638 -35.30736 -34.27511 -33.49889 -32.67957 -32.01800 -30.79424 -30.16716 -26.83356 -26.36016 -24.86302 -24.74641 -23.78285 -23.17275 -22.66136 -21.73350 -20.63323 -19.58852 -19.09603 -18.93745 -18.31452 -17.81695 -17.32757 -16.94072 -16.54167 -15.98923 -15.77167 -15.72854 -15.46281 -15.25677 -15.12153 -15.09042 -14.40055 -14.35694 -14.24283 -14.03727 -13.87367 -13.66296 -13.24224 -12.86108 -12.74898 -12.63323 -12.37118 -12.30417 -12.04098 -12.01028 -11.89596 -11.76328 -11.71981 -11.49358 -11.36107 -11.26675 -10.90791 -10.04408 -9.89650 -9.51042 -9.16964 -8.44211 -5.39187 -0.74351 0.33510 0.71600 0.74600 1.34241 1.43402 1.55924 1.65893 1.82722 1.85654 2.67598 2.73377 2.99472 3.16890 3.32521 3.37830 3.48732 3.64052 3.75433 3.79385 3.88112 3.91241 3.98989 4.02334 4.12697 4.18510 4.21254 4.36809 4.39425 4.49170 4.57559 4.63833 4.71835 4.77829 4.82630 4.91785 4.97730 4.99936 5.03034 5.22301 5.27878 5.30603 5.38448 5.45269 5.52503 5.86426 6.25389 6.46190 6.81465 6.90585 7.03979 7.91786 8.04547 9.07123 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012717 B = 0.003003 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.213817 B = 9320.221572 C =10209.992770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.095 4.095 3 Si 1.127 2.873 4 H -0.286 1.286 5 H -0.276 1.276 6 H -0.283 1.283 7 C -0.340 4.340 8 H 0.056 0.944 9 N -0.746 5.746 10 C 0.157 3.843 11 C 0.139 3.861 12 H 0.060 0.940 13 C -0.117 4.117 14 C -0.117 4.117 15 C 0.094 3.906 16 N -0.597 5.597 17 C 0.608 3.392 18 O -0.559 6.559 19 C -0.255 4.255 20 C 0.045 3.955 21 N -0.369 5.369 22 O 0.113 5.887 23 C 0.079 3.921 24 C -0.063 4.063 25 C -0.100 4.100 26 C -0.133 4.133 27 C -0.089 4.089 28 C -0.118 4.118 29 C -0.084 4.084 30 H 0.246 0.754 31 H 0.364 0.636 32 H 0.006 0.994 33 H 0.019 0.981 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.225 0.775 41 H 0.107 0.893 42 H 0.134 0.866 43 H 0.159 0.841 44 H 0.167 0.833 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.675 -26.984 -3.380 27.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.287 4.287 3 Si 0.951 3.049 4 H -0.212 1.212 5 H -0.201 1.201 6 H -0.210 1.210 7 C -0.471 4.471 8 H 0.074 0.926 9 N -0.391 5.391 10 C 0.030 3.970 11 C 0.036 3.964 12 H 0.078 0.922 13 C -0.155 4.155 14 C -0.154 4.154 15 C -0.028 4.028 16 N -0.330 5.330 17 C 0.396 3.604 18 O -0.439 6.439 19 C -0.263 4.263 20 C -0.134 4.134 21 N -0.073 5.073 22 O 0.052 5.948 23 C 0.014 3.986 24 C -0.064 4.064 25 C -0.118 4.118 26 C -0.151 4.151 27 C -0.107 4.107 28 C -0.136 4.136 29 C -0.102 4.102 30 H 0.056 0.944 31 H 0.196 0.804 32 H 0.024 0.976 33 H 0.037 0.963 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.133 0.867 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.242 0.758 41 H 0.125 0.875 42 H 0.152 0.848 43 H 0.177 0.823 44 H 0.185 0.815 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.690 -26.028 -3.218 26.280 hybrid contribution -0.248 -0.279 -0.211 0.429 sum 1.441 -26.307 -3.429 26.569 Atomic orbital electron populations 1.70982 1.06843 1.28395 1.55257 1.27215 0.97158 1.04338 0.99999 0.82646 0.73472 0.71671 0.77076 1.21204 1.20149 1.20955 1.20312 0.92364 0.87248 1.47207 0.92588 1.42276 1.07136 1.01353 1.88352 1.20892 0.94076 0.84940 0.97119 1.21631 0.92570 0.82235 0.99994 0.92151 1.22591 0.99130 0.98593 0.95154 1.22803 0.95753 0.92743 1.04146 1.22692 0.97579 0.96832 0.85658 1.48453 1.42536 1.18757 1.23255 1.16681 0.77925 0.84780 0.80976 1.90885 1.60510 1.56666 1.35809 1.21181 1.10334 0.96077 0.98668 1.25289 0.97196 0.89775 1.01124 1.73524 1.18110 1.17965 0.97732 1.84809 1.49722 1.35077 1.25241 1.23124 0.94423 0.86421 0.94633 1.17720 1.00358 0.97969 0.90338 1.21484 0.95624 0.96419 0.98304 1.21320 1.00111 1.00213 0.93467 1.21801 0.96790 0.92350 0.99785 1.21543 0.96110 0.99524 0.96410 1.21625 0.98406 0.96739 0.93474 0.94352 0.80391 0.97619 0.96295 0.91071 0.89993 0.89561 0.86693 0.88896 0.89320 0.75835 0.87461 0.84812 0.82346 0.81519 0.82815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.96 13.69 21.65 0.30 -60.66 16 2 C -0.10 -5.69 5.50 84.86 0.47 -5.22 16 3 Si 1.13 53.43 29.92 68.60 2.05 55.49 16 4 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.34 -20.30 9.98 84.03 0.84 -19.46 16 8 H 0.06 3.35 7.83 -2.91 -0.02 3.33 16 9 N -0.75 -40.00 5.37 -343.45 -1.85 -41.85 16 10 C 0.16 7.15 5.65 86.38 0.49 7.64 16 11 C 0.14 4.82 2.96 45.34 0.13 4.96 16 12 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 13 C -0.12 -3.22 6.19 31.78 0.20 -3.03 16 14 C -0.12 -2.07 7.09 31.99 0.23 -1.84 16 15 C 0.09 1.80 6.36 86.86 0.55 2.35 16 16 N -0.60 -17.33 3.06 -792.26 -2.43 -19.76 16 17 C 0.61 19.88 5.57 86.57 0.48 20.36 16 18 O -0.56 -23.51 14.24 -4.16 -0.06 -23.56 16 19 C -0.26 -6.78 5.11 -19.54 -0.10 -6.88 16 20 C 0.05 0.97 11.64 86.04 1.00 1.97 16 21 N -0.37 -8.36 11.98 -56.89 -0.68 -9.04 16 22 O 0.11 2.53 11.03 70.04 0.77 3.30 16 23 C 0.08 1.95 7.24 25.09 0.18 2.13 16 24 C -0.06 -1.47 5.87 -20.11 -0.12 -1.59 16 25 C -0.10 -2.65 9.17 22.55 0.21 -2.44 16 26 C -0.13 -2.84 10.03 22.23 0.22 -2.61 16 27 C -0.09 -1.31 10.04 22.34 0.22 -1.09 16 28 C -0.12 -1.51 10.03 22.23 0.22 -1.29 16 29 C -0.08 -1.39 9.74 22.55 0.22 -1.17 16 30 H 0.25 15.33 6.82 -92.70 -0.63 14.70 16 31 H 0.36 19.54 6.49 -92.70 -0.60 18.93 16 32 H 0.01 0.30 6.57 -2.39 -0.02 0.29 16 33 H 0.02 0.87 8.04 -2.39 -0.02 0.85 16 34 H 0.07 2.18 7.78 -2.39 -0.02 2.16 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.09 1.48 7.52 -2.39 -0.02 1.46 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.23 3.40 8.06 -2.91 -0.02 3.37 16 41 H 0.11 3.47 4.38 -2.91 -0.01 3.46 16 42 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 43 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.17 0.93 8.06 -2.91 -0.02 0.90 16 45 H 0.15 1.81 7.99 -2.91 -0.02 1.79 16 Total: -1.00 -79.78 375.15 4.12 -75.66 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.57 Total: 27.63 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 5.45 Total: -7.21 kcal Atomic # 7 Polarization: -126.64 SS G_CDS: -4.66 Total: -131.30 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: 0.71 Total: -20.26 kcal Atomic # 14 Polarization: 53.43 SS G_CDS: 2.05 Total: 55.49 kcal Total: -79.78 4.12 -75.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723959278.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.381 kcal (2) G-P(sol) polarization free energy of solvation -79.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds