Wall clock time and date at job start Sat Apr 11 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86793 * 120.00146 * 2 1 4 4 H 1.48501 * 109.47461 * 89.99620 * 3 2 1 5 5 H 1.48501 * 109.47434 * 209.99410 * 3 2 1 6 6 H 1.48501 * 109.47366 * 329.99431 * 3 2 1 7 7 C 1.38813 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99902 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99925 * 180.02562 * 7 2 1 10 10 C 1.46503 * 120.00109 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47482 * 174.94264 * 10 9 7 12 12 H 1.08998 * 109.86876 * 54.93208 * 11 10 9 13 13 C 1.54330 * 109.88118 * 293.76098 * 11 10 9 14 14 C 1.55153 * 102.94150 * 218.38509 * 13 11 10 15 15 C 1.54914 * 101.58061 * 35.50532 * 14 13 11 16 16 N 1.47015 * 109.88374 * 175.95047 * 11 10 9 17 17 C 1.34771 * 125.65197 * 298.32558 * 16 11 10 18 18 O 1.21616 * 119.99871 * 4.80990 * 17 16 11 19 19 C 1.47461 * 120.00366 * 184.81691 * 17 16 11 20 20 C 1.36233 * 126.36677 * 179.71060 * 19 17 16 21 21 O 1.34282 * 107.12237 * 179.83641 * 20 19 17 22 22 C 1.34475 * 108.16860 * 0.42439 * 21 20 19 23 23 C 1.47874 * 125.49144 * 179.70789 * 22 21 20 24 24 C 1.39542 * 120.14516 * 179.75024 * 23 22 21 25 25 C 1.37968 * 119.85880 * 179.76945 * 24 23 22 26 26 C 1.38353 * 120.14004 * 0.50776 * 25 24 23 27 27 C 1.38351 * 120.28456 * 359.74416 * 26 25 24 28 28 C 1.37966 * 120.14791 * 359.97438 * 27 26 25 29 29 N 1.30898 * 109.02137 * 359.73537 * 22 21 20 30 30 H 0.96999 * 120.00079 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00270 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47335 * 294.94500 * 10 9 7 33 33 H 1.09001 * 109.46625 * 54.93848 * 10 9 7 34 34 H 1.09000 * 110.71901 * 336.75066 * 13 11 10 35 35 H 1.09001 * 110.71970 * 100.02308 * 13 11 10 36 36 H 1.08992 * 111.00499 * 277.42848 * 14 13 11 37 37 H 1.08998 * 111.00498 * 153.57103 * 14 13 11 38 38 H 1.09003 * 110.36808 * 204.15130 * 15 14 13 39 39 H 1.08998 * 110.46204 * 81.87152 * 15 14 13 40 40 H 1.08001 * 126.44009 * 359.97438 * 20 19 17 41 41 H 1.08007 * 120.06718 * 0.02562 * 24 23 22 42 42 H 1.07994 * 119.93110 * 180.25117 * 25 24 23 43 43 H 1.07994 * 119.85502 * 179.72399 * 26 25 24 44 44 H 1.08003 * 119.92529 * 179.97438 * 27 26 25 45 45 H 1.07993 * 120.07523 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 1.4001 5 1 3.5478 1.4401 -0.6999 6 1 1.4477 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0022 11 6 5.6115 -2.1943 -0.1246 12 1 5.9301 -1.5111 0.6628 13 6 5.9175 -1.5843 -1.5088 14 6 7.2659 -2.2497 -1.8914 15 6 7.0955 -3.6666 -1.2887 16 7 6.3625 -3.4544 -0.0272 17 6 6.3787 -4.2788 1.0388 18 8 5.6661 -4.0480 1.9969 19 6 7.2606 -5.4606 1.0437 20 6 7.3842 -6.3722 2.0485 21 8 8.2848 -7.2837 1.6469 22 6 8.7156 -6.9357 0.4215 23 6 9.7184 -7.6726 -0.3773 24 6 10.0812 -7.2124 -1.6438 25 6 11.0209 -7.9019 -2.3820 26 6 11.5956 -9.0531 -1.8735 27 6 11.2365 -9.5176 -0.6207 28 6 10.3023 -8.8342 0.1301 29 7 8.1048 -5.8393 0.0498 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3621 0.0014 32 1 3.9181 -3.0017 0.9343 33 1 3.7828 -3.0812 -0.8387 34 1 5.1403 -1.8472 -2.2264 35 1 6.0280 -0.5022 -1.4375 36 1 8.1040 -1.7272 -1.4305 37 1 7.3847 -2.2974 -2.9738 38 1 8.0694 -4.1143 -1.0907 39 1 6.5173 -4.2999 -1.9615 40 1 6.8554 -6.3646 2.9902 41 1 9.6302 -6.3161 -2.0435 42 1 11.3055 -7.5446 -3.3605 43 1 12.3275 -9.5917 -2.4571 44 1 11.6885 -10.4171 -0.2296 45 1 10.0225 -9.1980 1.1076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723966681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:39 Heat of formation + Delta-G solvation = 44.804751 kcal Electronic energy + Delta-G solvation = -28689.147540 eV Core-core repulsion = 24674.178075 eV Total energy + Delta-G solvation = -4014.969465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.68793 -39.99011 -39.49007 -37.43290 -35.29449 -34.55169 -32.82299 -31.64983 -31.46852 -31.34554 -29.53156 -29.02799 -25.42166 -24.74189 -24.25178 -23.17734 -22.22913 -21.83443 -21.58517 -20.52157 -19.52742 -18.15506 -17.56672 -17.16356 -17.04744 -16.62650 -16.30942 -16.00594 -15.32435 -14.96428 -14.41931 -14.38769 -14.20040 -13.98693 -13.95276 -13.75343 -13.47653 -13.40825 -13.04975 -12.84330 -12.59923 -12.30794 -11.99842 -11.78181 -11.65729 -11.56396 -11.43168 -11.17386 -10.88663 -10.70175 -10.50164 -10.46215 -10.18258 -10.13566 -10.00284 -9.53156 -9.49722 -8.81416 -8.76276 -8.44385 -7.15241 -5.69840 -3.04933 0.19005 0.86836 1.07220 1.97376 2.14996 2.87325 3.21078 3.37006 3.40887 3.43217 3.44892 3.49381 4.30933 4.36466 4.44503 4.56856 4.60133 4.64860 4.67374 4.86780 4.91379 4.96931 5.05029 5.10093 5.30671 5.36814 5.37553 5.43246 5.50165 5.55496 5.59474 5.67495 5.82314 5.86674 5.89103 5.93569 5.96490 5.97714 6.06514 6.09596 6.34511 6.36089 6.46435 6.75768 6.97023 7.13153 7.58177 8.05602 8.17498 8.48651 9.27636 9.99682 10.20015 11.48777 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022991 B = 0.002305 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.550397 B =12141.991287 C =12909.766668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.237 4.237 8 H 0.089 0.911 9 N -0.752 5.752 10 C 0.149 3.851 11 C 0.128 3.872 12 H 0.076 0.924 13 C -0.124 4.124 14 C -0.136 4.136 15 C 0.099 3.901 16 N -0.593 5.593 17 C 0.610 3.390 18 O -0.523 6.523 19 C -0.055 4.055 20 C 0.017 3.983 21 O -0.191 6.191 22 C 0.233 3.767 23 C -0.019 4.019 24 C -0.069 4.069 25 C -0.121 4.121 26 C -0.101 4.101 27 C -0.122 4.122 28 C -0.089 4.089 29 N -0.443 5.443 30 H 0.259 0.741 31 H 0.360 0.640 32 H 0.043 0.957 33 H 0.030 0.970 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.235 0.765 41 H 0.140 0.860 42 H 0.133 0.867 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.938 -19.113 -4.146 34.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.218 1.218 7 C -0.367 4.367 8 H 0.107 0.893 9 N -0.398 5.398 10 C 0.021 3.979 11 C 0.025 3.975 12 H 0.094 0.906 13 C -0.162 4.162 14 C -0.174 4.174 15 C -0.024 4.024 16 N -0.326 5.326 17 C 0.396 3.604 18 O -0.399 6.399 19 C -0.176 4.176 20 C -0.057 4.057 21 O -0.076 6.076 22 C 0.028 3.972 23 C -0.020 4.020 24 C -0.089 4.089 25 C -0.139 4.139 26 C -0.119 4.119 27 C -0.140 4.140 28 C -0.108 4.108 29 N -0.173 5.173 30 H 0.069 0.931 31 H 0.192 0.808 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.251 0.749 41 H 0.158 0.842 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 28.392 -18.815 -4.123 34.309 hybrid contribution 0.263 0.908 0.712 1.184 sum 28.655 -17.906 -3.412 33.962 Atomic orbital electron populations 1.69701 1.05062 1.25696 1.57936 1.24659 0.95256 0.97141 1.02284 0.86530 0.79139 0.84984 0.77787 1.21102 1.20338 1.21780 1.19041 0.80448 0.94748 1.42496 0.89282 1.42550 1.04015 1.01854 1.91346 1.20970 0.87449 0.89665 0.99817 1.21907 0.93439 0.84144 0.98040 0.90557 1.22709 0.97126 1.00464 0.95879 1.22829 0.98023 0.95432 1.01102 1.22584 0.98068 0.97149 0.84578 1.48187 1.47062 1.22629 1.14736 1.16325 0.81273 0.80505 0.82256 1.90893 1.41522 1.72921 1.34543 1.21795 1.02501 1.00605 0.92728 1.25407 0.91744 0.87470 1.01075 1.84420 1.45974 1.45904 1.31335 1.23843 0.98175 0.92700 0.82525 1.17286 0.95605 0.95466 0.93614 1.21222 0.95930 0.99775 0.91930 1.21155 0.96789 0.95579 1.00348 1.21404 0.98913 0.95992 0.95617 1.21096 0.97800 1.00279 0.94782 1.21261 0.95813 0.93541 1.00211 1.71036 1.08252 1.10427 1.27631 0.93135 0.80781 0.93908 0.95247 0.89596 0.90134 0.90968 0.89942 0.88213 0.91503 0.74854 0.84246 0.84930 0.85411 0.85163 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.27 13.97 55.49 0.78 -29.49 16 2 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 3 Si 0.89 22.69 27.73 -169.99 -4.71 17.97 16 4 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 6 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 7 C -0.24 -7.06 10.47 -15.06 -0.16 -7.21 16 8 H 0.09 2.85 8.06 -52.49 -0.42 2.43 16 9 N -0.75 -18.92 5.20 -59.91 -0.31 -19.23 16 10 C 0.15 3.24 5.64 -4.04 -0.02 3.22 16 11 C 0.13 2.21 2.96 -66.95 -0.20 2.02 16 12 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 13 C -0.12 -1.79 6.18 -24.90 -0.15 -1.94 16 14 C -0.14 -1.49 7.09 -24.58 -0.17 -1.67 16 15 C 0.10 1.22 6.31 -2.52 -0.02 1.20 16 16 N -0.59 -9.31 3.06 -164.25 -0.50 -9.82 16 17 C 0.61 10.12 7.66 -12.51 -0.10 10.02 16 18 O -0.52 -10.32 15.70 5.26 0.08 -10.23 16 19 C -0.05 -0.74 6.82 -83.08 -0.57 -1.31 16 20 C 0.02 0.18 11.94 30.01 0.36 0.54 16 21 O -0.19 -1.97 10.45 5.30 0.06 -1.92 16 22 C 0.23 2.49 7.88 -14.01 -0.11 2.38 16 23 C -0.02 -0.16 5.87 -104.98 -0.62 -0.77 16 24 C -0.07 -0.51 9.68 -39.19 -0.38 -0.89 16 25 C -0.12 -0.66 10.03 -39.64 -0.40 -1.06 16 26 C -0.10 -0.49 10.04 -39.50 -0.40 -0.88 16 27 C -0.12 -0.63 10.03 -39.64 -0.40 -1.03 16 28 C -0.09 -0.60 9.71 -39.19 -0.38 -0.98 16 29 N -0.44 -5.39 7.95 -8.26 -0.07 -5.46 16 30 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 31 H 0.36 8.67 5.44 -40.82 -0.22 8.45 16 32 H 0.04 1.04 6.58 -51.93 -0.34 0.70 16 33 H 0.03 0.65 8.05 -51.93 -0.42 0.24 16 34 H 0.09 1.33 7.78 -51.93 -0.40 0.93 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 1.15 5.87 -51.93 -0.30 0.84 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.24 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.14 1.00 7.82 -52.48 -0.41 0.58 16 42 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 43 H 0.13 0.33 8.06 -52.49 -0.42 -0.10 16 44 H 0.13 0.39 8.06 -52.48 -0.42 -0.03 16 45 H 0.13 0.76 7.89 -52.49 -0.41 0.34 16 LS Contribution 377.36 15.07 5.69 5.69 Total: -1.00 -36.21 377.36 -8.71 -44.92 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.91 Total: 5.98 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -3.80 Total: 1.59 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: -0.11 Total: -63.99 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.14 Total: -12.15 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.71 Total: 17.97 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.21 -8.71 -44.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723966681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.723 kcal (2) G-P(sol) polarization free energy of solvation -36.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds