Wall clock time and date at job start Sat Apr 11 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86793 * 120.00146 * 2 1 4 4 H 1.48501 * 109.47461 * 89.99620 * 3 2 1 5 5 H 1.48501 * 109.47434 * 209.99410 * 3 2 1 6 6 H 1.48501 * 109.47366 * 329.99431 * 3 2 1 7 7 C 1.38813 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99902 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99925 * 180.02562 * 7 2 1 10 10 C 1.46503 * 120.00109 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47482 * 174.94264 * 10 9 7 12 12 H 1.08998 * 109.86876 * 54.93208 * 11 10 9 13 13 C 1.54330 * 109.88118 * 293.76098 * 11 10 9 14 14 C 1.55153 * 102.94150 * 218.38509 * 13 11 10 15 15 C 1.54914 * 101.58061 * 35.50532 * 14 13 11 16 16 N 1.47015 * 109.88374 * 175.95047 * 11 10 9 17 17 C 1.34771 * 125.65197 * 298.32558 * 16 11 10 18 18 O 1.21616 * 119.99871 * 4.80990 * 17 16 11 19 19 C 1.47461 * 120.00366 * 184.81691 * 17 16 11 20 20 C 1.36233 * 126.36677 * 179.71060 * 19 17 16 21 21 O 1.34282 * 107.12237 * 179.83641 * 20 19 17 22 22 C 1.34475 * 108.16860 * 0.42439 * 21 20 19 23 23 C 1.47874 * 125.49144 * 179.70789 * 22 21 20 24 24 C 1.39542 * 120.14516 * 179.75024 * 23 22 21 25 25 C 1.37968 * 119.85880 * 179.76945 * 24 23 22 26 26 C 1.38353 * 120.14004 * 0.50776 * 25 24 23 27 27 C 1.38351 * 120.28456 * 359.74416 * 26 25 24 28 28 C 1.37966 * 120.14791 * 359.97438 * 27 26 25 29 29 N 1.30898 * 109.02137 * 359.73537 * 22 21 20 30 30 H 0.96999 * 120.00079 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00270 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47335 * 294.94500 * 10 9 7 33 33 H 1.09001 * 109.46625 * 54.93848 * 10 9 7 34 34 H 1.09000 * 110.71901 * 336.75066 * 13 11 10 35 35 H 1.09001 * 110.71970 * 100.02308 * 13 11 10 36 36 H 1.08992 * 111.00499 * 277.42848 * 14 13 11 37 37 H 1.08998 * 111.00498 * 153.57103 * 14 13 11 38 38 H 1.09003 * 110.36808 * 204.15130 * 15 14 13 39 39 H 1.08998 * 110.46204 * 81.87152 * 15 14 13 40 40 H 1.08001 * 126.44009 * 359.97438 * 20 19 17 41 41 H 1.08007 * 120.06718 * 0.02562 * 24 23 22 42 42 H 1.07994 * 119.93110 * 180.25117 * 25 24 23 43 43 H 1.07994 * 119.85502 * 179.72399 * 26 25 24 44 44 H 1.08003 * 119.92529 * 179.97438 * 27 26 25 45 45 H 1.07993 * 120.07523 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 1.4001 5 1 3.5478 1.4401 -0.6999 6 1 1.4477 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0022 11 6 5.6115 -2.1943 -0.1246 12 1 5.9301 -1.5111 0.6628 13 6 5.9175 -1.5843 -1.5088 14 6 7.2659 -2.2497 -1.8914 15 6 7.0955 -3.6666 -1.2887 16 7 6.3625 -3.4544 -0.0272 17 6 6.3787 -4.2788 1.0388 18 8 5.6661 -4.0480 1.9969 19 6 7.2606 -5.4606 1.0437 20 6 7.3842 -6.3722 2.0485 21 8 8.2848 -7.2837 1.6469 22 6 8.7156 -6.9357 0.4215 23 6 9.7184 -7.6726 -0.3773 24 6 10.0812 -7.2124 -1.6438 25 6 11.0209 -7.9019 -2.3820 26 6 11.5956 -9.0531 -1.8735 27 6 11.2365 -9.5176 -0.6207 28 6 10.3023 -8.8342 0.1301 29 7 8.1048 -5.8393 0.0498 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3621 0.0014 32 1 3.9181 -3.0017 0.9343 33 1 3.7828 -3.0812 -0.8387 34 1 5.1403 -1.8472 -2.2264 35 1 6.0280 -0.5022 -1.4375 36 1 8.1040 -1.7272 -1.4305 37 1 7.3847 -2.2974 -2.9738 38 1 8.0694 -4.1143 -1.0907 39 1 6.5173 -4.2999 -1.9615 40 1 6.8554 -6.3646 2.9902 41 1 9.6302 -6.3161 -2.0435 42 1 11.3055 -7.5446 -3.3605 43 1 12.3275 -9.5917 -2.4571 44 1 11.6885 -10.4171 -0.2296 45 1 10.0225 -9.1980 1.1076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723966681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:38 Heat of formation + Delta-G solvation = 19.847142 kcal Electronic energy + Delta-G solvation = -28690.229783 eV Core-core repulsion = 24674.178075 eV Total energy + Delta-G solvation = -4016.051708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.55342 -41.25272 -39.94616 -38.75409 -36.66948 -36.05517 -33.76479 -33.40855 -32.57846 -31.90221 -30.80889 -30.15407 -26.88576 -26.08644 -24.90548 -24.17702 -23.59328 -23.01345 -22.37247 -21.63488 -20.73407 -19.77205 -18.81665 -18.19121 -17.98936 -17.57642 -17.33903 -16.64286 -16.48104 -16.30457 -15.79753 -15.65254 -15.42046 -15.23039 -14.84551 -14.77344 -14.58037 -14.37950 -14.22379 -14.02808 -13.89864 -13.77253 -13.22833 -13.07149 -12.85056 -12.58121 -12.47933 -12.37211 -12.14551 -12.01489 -11.96237 -11.83574 -11.67318 -11.58252 -11.31257 -10.99604 -10.90048 -9.92754 -9.81779 -9.37601 -9.36962 -8.06060 -5.41925 -0.43723 0.15238 0.44338 1.19316 1.34035 1.35310 1.41617 1.48355 1.71577 2.09198 2.46388 2.57816 2.86096 3.23829 3.32849 3.56035 3.63134 3.70412 3.77168 3.92545 4.00026 4.04103 4.17757 4.24528 4.25576 4.34072 4.42078 4.46376 4.49620 4.60581 4.65527 4.75241 4.85829 4.90294 4.98356 5.02914 5.07398 5.09904 5.11778 5.31427 5.37871 5.41171 5.49525 5.56090 5.68509 5.96060 6.15531 6.22582 6.39644 6.89946 7.01991 7.73592 7.98207 9.15478 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022991 B = 0.002305 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.550397 B =12141.991287 C =12909.766668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.064 4.064 3 Si 0.961 3.039 4 H -0.280 1.280 5 H -0.242 1.242 6 H -0.289 1.289 7 C -0.241 4.241 8 H 0.046 0.954 9 N -0.747 5.747 10 C 0.154 3.846 11 C 0.133 3.867 12 H 0.070 0.930 13 C -0.122 4.122 14 C -0.118 4.118 15 C 0.098 3.902 16 N -0.596 5.596 17 C 0.604 3.396 18 O -0.567 6.567 19 C -0.085 4.085 20 C 0.033 3.967 21 O -0.186 6.186 22 C 0.240 3.760 23 C -0.047 4.047 24 C -0.079 4.079 25 C -0.123 4.123 26 C -0.094 4.094 27 C -0.123 4.123 28 C -0.095 4.095 29 N -0.456 5.456 30 H 0.260 0.740 31 H 0.369 0.631 32 H 0.012 0.988 33 H 0.021 0.979 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.257 0.743 41 H 0.136 0.864 42 H 0.155 0.845 43 H 0.156 0.844 44 H 0.155 0.845 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.091 -19.360 -5.701 38.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.255 4.255 3 Si 0.787 3.213 4 H -0.207 1.207 5 H -0.166 1.166 6 H -0.216 1.216 7 C -0.372 4.372 8 H 0.065 0.935 9 N -0.394 5.394 10 C 0.027 3.973 11 C 0.029 3.971 12 H 0.088 0.912 13 C -0.160 4.160 14 C -0.156 4.156 15 C -0.024 4.024 16 N -0.327 5.327 17 C 0.393 3.607 18 O -0.447 6.447 19 C -0.205 4.205 20 C -0.041 4.041 21 O -0.072 6.072 22 C 0.034 3.966 23 C -0.048 4.048 24 C -0.099 4.099 25 C -0.141 4.141 26 C -0.113 4.113 27 C -0.141 4.141 28 C -0.114 4.114 29 N -0.186 5.186 30 H 0.069 0.931 31 H 0.203 0.797 32 H 0.030 0.970 33 H 0.039 0.961 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.084 0.916 40 H 0.273 0.727 41 H 0.154 0.846 42 H 0.172 0.828 43 H 0.174 0.826 44 H 0.173 0.827 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 32.603 -19.084 -5.718 38.208 hybrid contribution -1.014 0.757 1.183 1.732 sum 31.590 -18.327 -4.535 36.802 Atomic orbital electron populations 1.69898 1.07257 1.26960 1.59160 1.25596 0.96286 1.01603 1.02010 0.85330 0.79040 0.78775 0.78204 1.20659 1.16564 1.21564 1.18940 0.82459 0.93420 1.42337 0.93541 1.42406 1.02467 1.03425 1.91059 1.20927 0.90702 0.87957 0.97711 1.21745 0.90129 0.85182 1.00062 0.91182 1.22688 0.98834 1.01128 0.93328 1.22833 0.96262 0.93532 1.02956 1.22779 0.98072 0.98474 0.83046 1.48327 1.46770 1.21927 1.15711 1.16777 0.81040 0.81133 0.81794 1.90854 1.43462 1.74242 1.36144 1.21465 1.03783 1.00709 0.94509 1.25814 0.90815 0.86401 1.01061 1.84455 1.45763 1.45584 1.31412 1.24380 0.97677 0.92148 0.82372 1.17475 0.96437 0.96623 0.94276 1.21335 0.96635 1.00087 0.91809 1.21456 0.96006 0.95594 1.01037 1.21812 0.98518 0.95455 0.95495 1.21437 0.97046 1.00781 0.94805 1.21438 0.96093 0.93123 1.00760 1.70952 1.08728 1.11390 1.27500 0.93113 0.79711 0.97040 0.96119 0.90768 0.89028 0.89468 0.86960 0.87123 0.91569 0.72686 0.84632 0.82778 0.82610 0.82734 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.41 13.97 21.65 0.30 -65.11 16 2 C -0.06 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.96 46.63 27.73 68.60 1.90 48.53 16 4 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 5 H -0.24 -10.24 6.52 99.48 0.65 -9.59 16 6 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 7 C -0.24 -14.84 10.47 84.03 0.88 -13.96 16 8 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 9 N -0.75 -38.19 5.20 -343.45 -1.79 -39.98 16 10 C 0.15 7.01 5.64 86.38 0.49 7.50 16 11 C 0.13 4.61 2.96 45.34 0.13 4.74 16 12 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 13 C -0.12 -3.29 6.18 31.78 0.20 -3.09 16 14 C -0.12 -2.24 7.09 31.99 0.23 -2.01 16 15 C 0.10 2.28 6.31 86.86 0.55 2.83 16 16 N -0.60 -18.87 3.06 -791.82 -2.43 -21.29 16 17 C 0.60 20.78 7.66 86.67 0.66 21.44 16 18 O -0.57 -23.66 15.70 -4.08 -0.06 -23.72 16 19 C -0.08 -2.32 6.82 40.50 0.28 -2.05 16 20 C 0.03 0.72 11.94 67.35 0.80 1.53 16 21 O -0.19 -3.76 10.45 -3.97 -0.04 -3.80 16 22 C 0.24 5.02 7.88 87.39 0.69 5.70 16 23 C -0.05 -0.75 5.87 -20.09 -0.12 -0.87 16 24 C -0.08 -1.05 9.68 22.52 0.22 -0.84 16 25 C -0.12 -1.02 10.03 22.23 0.22 -0.80 16 26 C -0.09 -0.59 10.04 22.32 0.22 -0.37 16 27 C -0.12 -0.92 10.03 22.23 0.22 -0.70 16 28 C -0.09 -1.13 9.71 22.52 0.22 -0.91 16 29 N -0.46 -11.01 7.95 -294.25 -2.34 -13.35 16 30 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 31 H 0.37 17.39 5.44 -92.71 -0.50 16.89 16 32 H 0.01 0.60 6.58 -2.39 -0.02 0.58 16 33 H 0.02 0.97 8.05 -2.39 -0.02 0.95 16 34 H 0.07 2.19 7.78 -2.39 -0.02 2.18 16 35 H 0.09 2.29 8.14 -2.39 -0.02 2.28 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.11 2.40 5.87 -2.39 -0.01 2.39 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.26 4.09 8.06 -2.91 -0.02 4.07 16 41 H 0.14 1.81 7.82 -2.91 -0.02 1.79 16 42 H 0.15 0.55 8.06 -2.91 -0.02 0.52 16 43 H 0.16 0.10 8.06 -2.91 -0.02 0.07 16 44 H 0.15 0.36 8.06 -2.91 -0.02 0.34 16 45 H 0.14 1.38 7.89 -2.91 -0.02 1.36 16 Total: -1.00 -82.81 377.36 2.37 -80.44 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.46 Total: 23.58 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 6.36 Total: 14.70 kcal Atomic # 7 Polarization: -133.48 SS G_CDS: -6.25 Total: -139.73 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.11 Total: -27.52 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.90 Total: 48.53 kcal Total: -82.81 2.37 -80.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723966681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.292 kcal (2) G-P(sol) polarization free energy of solvation -82.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds