Wall clock time and date at job start Sat Apr 11 2020 06:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99817 * 2 1 4 4 H 1.48503 * 109.46884 * 269.99800 * 3 2 1 5 5 H 1.48488 * 109.47204 * 29.99937 * 3 2 1 6 6 H 1.48506 * 109.46750 * 149.99873 * 3 2 1 7 7 C 1.38811 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00383 * 359.97438 * 7 2 1 9 9 N 1.36940 * 119.99911 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99867 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46968 * 174.71510 * 10 9 7 12 12 H 1.09004 * 109.46802 * 63.78713 * 11 10 9 13 13 N 1.46496 * 109.47076 * 303.79063 * 11 10 9 14 14 C 1.34778 * 120.00083 * 153.66668 * 13 11 10 15 15 O 1.21275 * 119.99786 * 355.00687 * 14 13 11 16 16 C 1.50700 * 120.00043 * 175.28836 * 14 13 11 17 17 C 1.50704 * 109.46922 * 179.72266 * 16 14 13 18 18 N 1.34778 * 119.99400 * 179.97438 * 17 16 14 19 19 O 1.21273 * 120.00015 * 359.97438 * 17 16 14 20 20 C 1.50697 * 109.46978 * 183.79047 * 11 10 9 21 21 C 1.39377 * 119.50686 * 79.99950 * 20 11 10 22 22 C 1.36092 * 120.98833 * 180.02562 * 21 20 11 23 23 C 1.40549 * 119.65655 * 359.97438 * 22 21 20 24 24 C 1.40539 * 121.29014 * 180.02562 * 23 22 21 25 25 C 1.36093 * 119.65063 * 179.97438 * 24 23 22 26 26 C 1.39372 * 120.99368 * 0.02562 * 25 24 23 27 27 C 1.36099 * 120.98460 * 0.02562 * 26 25 24 28 28 C 1.40534 * 119.65445 * 359.95706 * 27 26 25 29 29 C 1.36099 * 119.50317 * 259.72663 * 20 11 10 30 30 H 0.96999 * 120.00033 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00035 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47096 * 54.71742 * 10 9 7 33 33 H 1.09000 * 109.47010 * 294.71443 * 10 9 7 34 34 H 0.96999 * 120.00256 * 333.66246 * 13 11 10 35 35 H 1.09001 * 109.47089 * 299.72059 * 16 14 13 36 36 H 1.08998 * 109.47270 * 59.72270 * 16 14 13 37 37 H 0.96995 * 120.00431 * 359.97438 * 18 17 16 38 38 H 0.97005 * 119.99208 * 180.02562 * 18 17 16 39 39 H 1.07995 * 119.50473 * 0.02562 * 21 20 11 40 40 H 1.08004 * 120.17464 * 179.97438 * 22 21 20 41 41 H 1.07999 * 120.17587 * 359.96159 * 24 23 22 42 42 H 1.08001 * 119.50103 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.50559 * 179.97438 * 26 25 24 44 44 H 1.07998 * 120.16825 * 179.97438 * 27 26 25 45 45 H 1.07996 * 120.17153 * 359.97438 * 29 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0022 11 6 5.6111 -2.1945 -0.1303 12 1 5.9567 -1.6398 0.7421 13 7 5.8571 -1.4052 -1.3397 14 6 6.9389 -0.6048 -1.4136 15 8 7.6590 -0.4678 -0.4474 16 6 7.2502 0.1250 -2.6948 17 6 8.4976 0.9508 -2.5122 18 7 8.9697 1.6930 -3.5334 19 8 9.0764 0.9474 -1.4466 20 6 6.3565 -3.5009 -0.2227 21 6 6.4049 -4.1791 -1.4394 22 6 7.0690 -5.3611 -1.5569 23 6 7.7173 -5.9089 -0.4365 24 6 8.4134 -7.1270 -0.5192 25 6 9.0296 -7.6266 0.5866 26 6 8.9813 -6.9484 1.8033 27 6 8.3158 -5.7671 1.9210 28 6 7.6675 -5.2196 0.8007 29 6 6.9772 -3.9981 0.8818 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3621 0.0014 32 1 3.7800 -3.0829 -0.8364 33 1 3.9213 -2.9998 0.9360 34 1 5.2415 -1.4587 -2.0873 35 1 7.4068 -0.5976 -3.4957 36 1 6.4166 0.7782 -2.9526 37 1 8.5069 1.6954 -4.3858 38 1 9.7728 2.2242 -3.4159 39 1 5.9080 -3.7602 -2.3019 40 1 7.0977 -5.8757 -2.5060 41 1 8.4588 -7.6638 -1.4551 42 1 9.5642 -8.5626 0.5203 43 1 9.4786 -7.3671 2.6657 44 1 8.2864 -5.2529 2.8702 45 1 6.9353 -3.4592 1.8167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724070697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:42 Heat of formation + Delta-G solvation = -13.435536 kcal Electronic energy + Delta-G solvation = -29013.197920 eV Core-core repulsion = 24995.702967 eV Total energy + Delta-G solvation = -4017.494953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.62294 -40.04716 -38.69838 -37.05534 -35.41258 -33.86000 -33.57650 -32.79439 -31.66937 -30.81535 -29.93199 -29.41107 -27.41102 -24.15177 -23.34250 -22.29224 -21.91925 -21.84181 -20.68918 -20.07194 -17.94627 -17.60061 -17.36507 -17.26437 -16.90629 -16.37913 -15.87639 -15.66071 -15.38543 -14.81741 -14.58415 -14.27617 -13.99603 -13.94156 -13.66280 -13.53104 -13.38482 -13.33726 -13.12439 -12.84029 -12.65379 -12.39074 -12.10949 -11.88102 -11.56285 -11.34262 -11.09757 -10.93590 -10.82185 -10.68907 -10.21433 -10.19419 -9.94231 -9.78679 -9.65847 -9.39208 -9.00710 -8.88519 -8.50805 -7.87530 -7.32317 -5.82884 -3.19578 0.53352 0.99255 2.06062 2.56105 2.85053 2.88874 3.07420 3.31130 3.39769 3.42123 3.66887 4.11823 4.52415 4.53692 4.56586 4.70695 4.79793 4.87450 4.90061 5.04339 5.07439 5.15912 5.19661 5.29859 5.33844 5.36921 5.46067 5.48745 5.65868 5.70972 5.77391 5.94876 6.06855 6.20158 6.22374 6.33147 6.39260 6.46907 6.56251 6.58171 6.63794 6.81911 6.84608 7.00035 7.15199 7.68865 7.91990 8.18470 8.35377 8.46756 9.13848 9.85920 10.05203 11.35130 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007996 B = 0.003913 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3500.710151 B = 7154.749265 C = 9771.120181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.880 3.120 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.156 3.844 11 C 0.173 3.827 12 H 0.098 0.902 13 N -0.717 5.717 14 C 0.512 3.488 15 O -0.497 6.497 16 C -0.170 4.170 17 C 0.515 3.485 18 N -0.862 5.862 19 O -0.496 6.496 20 C -0.078 4.078 21 C -0.092 4.092 22 C -0.114 4.114 23 C -0.053 4.053 24 C -0.108 4.108 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.101 4.101 28 C -0.049 4.049 29 C -0.090 4.090 30 H 0.260 0.740 31 H 0.363 0.637 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.404 0.596 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.399 0.601 38 H 0.401 0.599 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.126 0.874 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.186 -9.145 -8.689 22.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.188 4.188 3 Si 0.711 3.289 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.400 5.400 10 C 0.028 3.972 11 C 0.068 3.932 12 H 0.116 0.884 13 N -0.371 5.371 14 C 0.296 3.704 15 O -0.369 6.369 16 C -0.213 4.213 17 C 0.298 3.702 18 N -0.428 5.428 19 O -0.367 6.367 20 C -0.080 4.080 21 C -0.110 4.110 22 C -0.132 4.132 23 C -0.053 4.053 24 C -0.126 4.126 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.119 4.119 28 C -0.049 4.049 29 C -0.109 4.109 30 H 0.070 0.930 31 H 0.197 0.803 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.239 0.761 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.227 0.773 38 H 0.232 0.768 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.144 0.856 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 19.720 -9.255 -7.168 22.932 hybrid contribution 0.204 1.437 -0.899 1.707 sum 19.924 -7.818 -8.067 22.873 Atomic orbital electron populations 1.69696 1.05084 1.25897 1.57232 1.24647 0.95176 0.97110 1.01843 0.86610 0.79458 0.85104 0.77766 1.21090 1.21633 1.20224 1.19031 0.80382 0.94775 1.43417 0.89083 1.42687 1.04066 1.01963 1.91245 1.20893 0.86336 0.89930 0.99998 1.20206 0.95988 0.88117 0.88890 0.88359 1.45920 1.26435 1.45286 1.19416 1.19887 0.81387 0.79759 0.89377 1.90844 1.47941 1.61258 1.36844 1.21618 0.98934 1.01251 0.99492 1.20026 0.85900 0.80143 0.84141 1.43866 1.32475 1.50937 1.15541 1.90911 1.58179 1.62328 1.25294 1.19890 0.97843 0.96496 0.93759 1.20651 0.98406 0.94664 0.97302 1.20943 0.98360 0.96298 0.97583 1.18093 0.98597 0.95166 0.93409 1.20996 0.97675 0.95099 0.98788 1.20803 1.00074 1.00025 0.93071 1.20807 0.99980 0.95676 0.97728 1.21069 0.97033 0.96008 0.97802 1.18062 0.98470 0.94990 0.93340 1.20908 0.96413 0.94736 0.98826 0.92980 0.80348 0.94249 0.94122 0.76097 0.86059 0.85866 0.77324 0.76816 0.85984 0.85728 0.85847 0.86293 0.86206 0.85578 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.63 13.97 55.49 0.78 -27.85 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 21.77 27.74 -169.99 -4.71 17.06 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 7 C -0.25 -6.71 10.47 -15.06 -0.16 -6.87 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 9 N -0.75 -17.00 5.21 -59.91 -0.31 -17.31 16 10 C 0.16 2.84 5.79 -4.04 -0.02 2.81 16 11 C 0.17 2.73 2.33 -69.08 -0.16 2.57 16 12 H 0.10 1.76 7.28 -51.93 -0.38 1.38 16 13 N -0.72 -10.07 3.83 -54.93 -0.21 -10.28 16 14 C 0.51 7.78 7.79 -10.99 -0.09 7.70 16 15 O -0.50 -9.98 13.79 -18.95 -0.26 -10.24 16 16 C -0.17 -1.73 6.19 -29.03 -0.18 -1.91 16 17 C 0.52 6.41 8.09 -10.98 -0.09 6.32 16 18 N -0.86 -6.33 8.87 31.22 0.28 -6.06 16 19 O -0.50 -9.12 15.02 -18.95 -0.28 -9.41 16 20 C -0.08 -1.12 4.90 -104.97 -0.51 -1.64 16 21 C -0.09 -1.16 9.22 -39.93 -0.37 -1.52 16 22 C -0.11 -1.33 9.77 -39.48 -0.39 -1.72 16 23 C -0.05 -0.67 5.74 -106.83 -0.61 -1.28 16 24 C -0.11 -1.14 9.77 -39.49 -0.39 -1.52 16 25 C -0.12 -1.19 9.95 -39.93 -0.40 -1.59 16 26 C -0.12 -1.26 9.95 -39.93 -0.40 -1.66 16 27 C -0.10 -1.18 9.77 -39.49 -0.39 -1.57 16 28 C -0.05 -0.66 5.74 -106.84 -0.61 -1.27 16 29 C -0.09 -1.29 9.36 -39.48 -0.37 -1.66 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.36 8.26 5.33 -40.82 -0.22 8.04 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.40 4.85 8.62 -40.82 -0.35 4.50 16 35 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.40 1.50 8.83 -40.82 -0.36 1.14 16 38 H 0.40 2.68 8.93 -40.82 -0.36 2.31 16 39 H 0.12 1.31 7.68 -52.49 -0.40 0.91 16 40 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.13 1.74 7.99 -52.49 -0.42 1.32 16 LS Contribution 383.37 15.07 5.78 5.78 Total: -1.00 -38.82 383.37 -10.07 -48.89 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -5.89 Total: 14.08 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -5.22 Total: -4.66 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: 0.53 Total: -61.50 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.55 Total: -19.64 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.82 -10.07 -48.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724070697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.456 kcal (2) G-P(sol) polarization free energy of solvation -38.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds