Wall clock time and date at job start Sat Apr 11 2020 06:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86807 * 119.99557 * 2 1 4 4 H 1.48498 * 109.47026 * 269.99467 * 3 2 1 5 5 H 1.48498 * 109.47223 * 29.99661 * 3 2 1 6 6 H 1.48504 * 109.47032 * 149.99442 * 3 2 1 7 7 C 1.38804 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00271 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64479 * 359.97438 * 9 7 2 11 11 C 1.54912 * 104.83179 * 155.91538 * 10 9 7 12 12 C 1.55157 * 101.57885 * 37.00667 * 11 10 9 13 13 O 1.42900 * 110.72159 * 83.04470 * 12 11 10 14 14 C 1.53005 * 110.71825 * 206.13439 * 12 11 10 15 15 N 1.46503 * 109.47015 * 180.02562 * 14 12 11 16 16 C 1.34775 * 119.99722 * 179.97438 * 15 14 12 17 17 O 1.21605 * 120.00273 * 0.02562 * 16 15 14 18 18 C 1.47443 * 119.99996 * 179.97438 * 16 15 14 19 19 C 1.38952 * 121.16846 * 0.03049 * 18 16 15 20 20 N 1.32203 * 121.31830 * 179.97438 * 19 18 16 21 21 C 1.31197 * 123.69593 * 359.97438 * 20 19 18 22 22 C 1.40385 * 120.91600 * 0.02562 * 21 20 19 23 23 C 1.40390 * 122.14663 * 179.97438 * 22 21 20 24 24 C 1.36229 * 119.49116 * 180.02562 * 23 22 21 25 25 C 1.39298 * 121.10085 * 359.91124 * 24 23 22 26 26 C 1.36437 * 120.95107 * 0.13645 * 25 24 23 27 27 C 1.39695 * 119.43239 * 359.90859 * 26 25 24 28 28 C 1.47018 * 125.64954 * 180.02562 * 9 7 2 29 29 H 0.96991 * 120.00244 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.36591 * 37.07914 * 10 9 7 31 31 H 1.08999 * 110.45973 * 274.79725 * 10 9 7 32 32 H 1.09001 * 111.00294 * 278.93374 * 11 10 9 33 33 H 1.09003 * 111.03809 * 155.09768 * 11 10 9 34 34 H 0.96698 * 114.00075 * 182.43810 * 13 12 11 35 35 H 1.09001 * 109.47200 * 60.00228 * 14 12 11 36 36 H 1.09004 * 109.47139 * 300.00293 * 14 12 11 37 37 H 0.96994 * 120.00244 * 359.97438 * 15 14 12 38 38 H 1.08000 * 119.34543 * 359.97438 * 19 18 16 39 39 H 1.07998 * 119.54510 * 180.02562 * 21 20 19 40 40 H 1.08006 * 120.25716 * 0.02562 * 23 22 21 41 41 H 1.08002 * 119.45148 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.52141 * 180.02562 * 25 24 23 43 43 H 1.07994 * 120.28510 * 180.18917 * 26 25 24 44 44 H 1.08997 * 109.88605 * 61.60394 * 28 9 7 45 45 H 1.08994 * 109.88678 * 300.43255 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4404 0.7002 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1414 -2.5332 0.0005 11 6 -0.4014 -3.9327 -0.6106 12 6 0.7787 -4.7524 -0.0250 13 8 0.4722 -5.2083 1.2942 14 6 1.1235 -5.9318 -0.9366 15 7 2.2386 -6.6860 -0.3586 16 6 2.7161 -7.7751 -0.9929 17 8 2.2216 -8.1314 -2.0452 18 6 3.8387 -8.5338 -0.4116 19 6 4.4221 -8.1482 0.7891 20 7 5.4284 -8.8266 1.3133 21 6 5.9513 -9.8958 0.7614 22 6 5.4572 -10.3951 -0.4541 23 6 5.9973 -11.5365 -1.0676 24 6 5.4760 -11.9736 -2.2479 25 6 4.4142 -11.3079 -2.8560 26 6 3.8659 -10.1951 -2.2879 27 6 4.3770 -9.7193 -1.0780 28 6 1.9320 -3.7274 0.0016 29 1 -0.4850 0.8399 -0.0004 30 1 -0.5991 -1.7592 -0.6155 31 1 -0.5289 -2.4857 1.0182 32 1 -0.3517 -3.8991 -1.6989 33 1 -1.3588 -4.3334 -0.2775 34 1 1.1919 -5.6943 1.7195 35 1 1.4077 -5.5594 -1.9208 36 1 0.2550 -6.5836 -1.0317 37 1 2.6332 -6.4016 0.4805 38 1 4.0460 -7.2768 1.3045 39 1 6.7732 -10.3990 1.2489 40 1 6.8197 -12.0640 -0.6075 41 1 5.8917 -12.8519 -2.7191 42 1 4.0205 -11.6769 -3.7915 43 1 3.0409 -9.6892 -2.7671 44 1 2.5283 -3.8637 0.9038 45 1 2.5586 -3.8514 -0.8816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724425591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:48 Heat of formation + Delta-G solvation = 8.952053 kcal Electronic energy + Delta-G solvation = -28911.353550 eV Core-core repulsion = 24894.829395 eV Total energy + Delta-G solvation = -4016.524154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.22345 -39.73977 -38.43521 -37.70329 -35.25415 -34.31886 -33.11670 -32.14265 -31.52149 -30.39432 -29.47277 -28.16680 -25.98185 -25.05663 -23.86398 -23.65965 -22.71276 -21.16762 -20.20253 -19.95916 -18.47519 -18.13433 -17.72777 -16.98362 -16.58885 -15.99668 -15.79560 -15.54000 -15.20100 -14.76359 -14.62812 -14.53592 -14.12661 -14.05079 -13.85849 -13.55551 -13.26004 -13.11110 -12.94283 -12.52627 -12.39485 -12.27356 -12.13850 -11.78217 -11.61485 -11.06809 -10.89173 -10.81759 -10.42948 -10.40563 -10.28716 -10.16629 -9.98769 -9.74879 -9.61814 -9.46030 -9.45150 -9.25537 -8.67523 -8.46552 -6.88634 -5.68683 -3.11220 -0.29622 0.52955 1.33056 2.50201 2.86275 2.93601 3.38307 3.43139 3.45309 3.74322 3.86726 4.14552 4.28210 4.32952 4.41175 4.43539 4.49318 4.63621 4.76688 4.83555 4.90887 5.10084 5.13376 5.24923 5.36233 5.39820 5.47024 5.58517 5.60153 5.71850 5.81051 5.91135 6.00231 6.09645 6.17566 6.20086 6.25672 6.37545 6.46189 6.50970 6.55841 6.58668 7.21995 7.50862 7.53487 7.58238 7.80960 7.86123 7.97972 8.31690 9.17775 9.78104 10.42033 11.35114 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.002344 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.179918 B =11942.411618 C =12448.879764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.916 3.084 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.599 5.599 10 C 0.156 3.844 11 C -0.128 4.128 12 C 0.104 3.896 13 O -0.541 6.541 14 C 0.105 3.895 15 N -0.718 5.718 16 C 0.569 3.431 17 O -0.532 6.532 18 C -0.174 4.174 19 C 0.124 3.876 20 N -0.496 5.496 21 C 0.177 3.823 22 C -0.122 4.122 23 C -0.089 4.089 24 C -0.119 4.119 25 C -0.097 4.097 26 C -0.111 4.111 27 C 0.013 3.987 28 C 0.116 3.884 29 H 0.253 0.747 30 H 0.108 0.892 31 H 0.019 0.981 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.362 0.638 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.397 0.603 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.166 0.834 44 H 0.023 0.977 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.755 -24.801 -1.758 26.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.746 3.254 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.326 5.326 10 C 0.031 3.969 11 C -0.167 4.167 12 C 0.063 3.937 13 O -0.345 6.345 14 C -0.019 4.019 15 N -0.370 5.370 16 C 0.356 3.644 17 O -0.411 6.411 18 C -0.179 4.179 19 C -0.021 4.021 20 N -0.203 5.203 21 C 0.005 3.995 22 C -0.125 4.125 23 C -0.109 4.109 24 C -0.137 4.137 25 C -0.116 4.116 26 C -0.128 4.128 27 C 0.008 3.992 28 C -0.011 4.011 29 H 0.064 0.936 30 H 0.126 0.874 31 H 0.037 0.963 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.208 0.792 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.233 0.767 38 H 0.176 0.824 39 H 0.184 0.816 40 H 0.153 0.847 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.183 0.817 44 H 0.041 0.959 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 8.986 -24.055 -1.845 25.744 hybrid contribution 0.983 0.381 -0.134 1.063 sum 9.969 -23.673 -1.980 25.763 Atomic orbital electron populations 1.69787 1.04896 1.24902 1.57277 1.24800 0.95749 0.97774 1.02213 0.86058 0.78511 0.83225 0.77593 1.21531 1.21583 1.20734 1.19053 0.90467 0.82354 1.43508 0.90518 1.44410 1.01977 0.99314 1.86851 1.21943 0.84445 0.91790 0.98712 1.23055 0.95495 0.98296 0.99810 1.22597 0.98034 0.91024 0.82064 1.86657 1.42990 1.75953 1.28926 1.22166 0.88580 0.93145 0.97988 1.45888 1.36263 1.28380 1.26430 1.17768 0.82217 0.80169 0.84248 1.90641 1.60022 1.67967 1.22471 1.21896 0.99806 0.98143 0.98027 1.22790 0.90720 0.97353 0.91194 1.67131 1.10802 1.07703 1.34633 1.23329 0.95791 0.90335 0.90016 1.19024 0.97912 0.98031 0.97487 1.20964 0.99504 0.94832 0.95599 1.21010 0.96737 1.00217 0.95746 1.21208 0.95522 0.95006 0.99911 1.21820 1.00780 0.96115 0.94118 1.18908 0.93490 0.92433 0.94402 1.21932 0.93598 0.87238 0.98308 0.93617 0.87394 0.96333 0.90517 0.91000 0.79161 0.89896 0.90371 0.76732 0.82435 0.81586 0.84696 0.85451 0.85302 0.81722 0.95907 0.95139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.74 10.09 55.49 0.56 -26.18 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.92 22.00 29.55 -169.99 -5.02 16.97 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.25 10.27 -15.06 -0.15 -6.41 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -15.17 3.39 -170.08 -0.58 -15.75 16 10 C 0.16 3.79 5.88 -2.53 -0.01 3.77 16 11 C -0.13 -2.40 6.26 -24.58 -0.15 -2.55 16 12 C 0.10 1.74 0.92 -88.78 -0.08 1.65 16 13 O -0.54 -8.71 13.09 -35.23 -0.46 -9.18 16 14 C 0.10 1.48 4.74 -4.04 -0.02 1.46 16 15 N -0.72 -8.66 5.15 -61.37 -0.32 -8.97 16 16 C 0.57 7.54 7.77 -12.51 -0.10 7.44 16 17 O -0.53 -8.36 13.74 5.27 0.07 -8.29 16 18 C -0.17 -2.05 6.07 -102.66 -0.62 -2.67 16 19 C 0.12 1.29 10.71 -17.13 -0.18 1.11 16 20 N -0.50 -5.21 10.22 -12.58 -0.13 -5.34 16 21 C 0.18 1.50 11.00 -17.02 -0.19 1.31 16 22 C -0.12 -1.13 5.74 -106.89 -0.61 -1.75 16 23 C -0.09 -0.61 9.82 -39.49 -0.39 -1.00 16 24 C -0.12 -0.81 9.94 -39.91 -0.40 -1.21 16 25 C -0.10 -0.81 9.96 -39.84 -0.40 -1.21 16 26 C -0.11 -1.23 9.32 -39.69 -0.37 -1.60 16 27 C 0.01 0.15 5.91 -104.74 -0.62 -0.47 16 28 C 0.12 2.30 6.30 -3.07 -0.02 2.28 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.11 2.92 5.88 -51.93 -0.31 2.62 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.36 4.26 7.78 45.56 0.35 4.61 16 35 H 0.08 1.24 8.06 -51.93 -0.42 0.83 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.40 3.93 5.37 -40.82 -0.22 3.71 16 38 H 0.16 1.28 6.44 -52.49 -0.34 0.95 16 39 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 41 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 42 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.17 2.08 5.24 -52.49 -0.28 1.81 16 44 H 0.02 0.44 8.07 -51.93 -0.42 0.02 16 45 H 0.03 0.60 7.76 -51.93 -0.40 0.20 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -34.38 368.11 -9.69 -44.06 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.95 Total: 7.31 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -4.41 Total: -0.20 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.46 Total: -56.24 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.39 Total: -17.46 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.38 -9.69 -44.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724425591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.016 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds