Wall clock time and date at job start Sat Apr 11 2020 06:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86807 * 119.99557 * 2 1 4 4 H 1.48498 * 109.47026 * 269.99467 * 3 2 1 5 5 H 1.48498 * 109.47223 * 29.99661 * 3 2 1 6 6 H 1.48504 * 109.47032 * 149.99442 * 3 2 1 7 7 C 1.38804 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00271 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64479 * 359.97438 * 9 7 2 11 11 C 1.54912 * 104.83179 * 155.91538 * 10 9 7 12 12 C 1.55157 * 101.57885 * 37.00667 * 11 10 9 13 13 O 1.42900 * 110.72159 * 83.04470 * 12 11 10 14 14 C 1.53005 * 110.71825 * 206.13439 * 12 11 10 15 15 N 1.46503 * 109.47015 * 180.02562 * 14 12 11 16 16 C 1.34775 * 119.99722 * 179.97438 * 15 14 12 17 17 O 1.21605 * 120.00273 * 0.02562 * 16 15 14 18 18 C 1.47443 * 119.99996 * 179.97438 * 16 15 14 19 19 C 1.38952 * 121.16846 * 0.03049 * 18 16 15 20 20 N 1.32203 * 121.31830 * 179.97438 * 19 18 16 21 21 C 1.31197 * 123.69593 * 359.97438 * 20 19 18 22 22 C 1.40385 * 120.91600 * 0.02562 * 21 20 19 23 23 C 1.40390 * 122.14663 * 179.97438 * 22 21 20 24 24 C 1.36229 * 119.49116 * 180.02562 * 23 22 21 25 25 C 1.39298 * 121.10085 * 359.91124 * 24 23 22 26 26 C 1.36437 * 120.95107 * 0.13645 * 25 24 23 27 27 C 1.39695 * 119.43239 * 359.90859 * 26 25 24 28 28 C 1.47018 * 125.64954 * 180.02562 * 9 7 2 29 29 H 0.96991 * 120.00244 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.36591 * 37.07914 * 10 9 7 31 31 H 1.08999 * 110.45973 * 274.79725 * 10 9 7 32 32 H 1.09001 * 111.00294 * 278.93374 * 11 10 9 33 33 H 1.09003 * 111.03809 * 155.09768 * 11 10 9 34 34 H 0.96698 * 114.00075 * 182.43810 * 13 12 11 35 35 H 1.09001 * 109.47200 * 60.00228 * 14 12 11 36 36 H 1.09004 * 109.47139 * 300.00293 * 14 12 11 37 37 H 0.96994 * 120.00244 * 359.97438 * 15 14 12 38 38 H 1.08000 * 119.34543 * 359.97438 * 19 18 16 39 39 H 1.07998 * 119.54510 * 180.02562 * 21 20 19 40 40 H 1.08006 * 120.25716 * 0.02562 * 23 22 21 41 41 H 1.08002 * 119.45148 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.52141 * 180.02562 * 25 24 23 43 43 H 1.07994 * 120.28510 * 180.18917 * 26 25 24 44 44 H 1.08997 * 109.88605 * 61.60394 * 28 9 7 45 45 H 1.08994 * 109.88678 * 300.43255 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4404 0.7002 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1414 -2.5332 0.0005 11 6 -0.4014 -3.9327 -0.6106 12 6 0.7787 -4.7524 -0.0250 13 8 0.4722 -5.2083 1.2942 14 6 1.1235 -5.9318 -0.9366 15 7 2.2386 -6.6860 -0.3586 16 6 2.7161 -7.7751 -0.9929 17 8 2.2216 -8.1314 -2.0452 18 6 3.8387 -8.5338 -0.4116 19 6 4.4221 -8.1482 0.7891 20 7 5.4284 -8.8266 1.3133 21 6 5.9513 -9.8958 0.7614 22 6 5.4572 -10.3951 -0.4541 23 6 5.9973 -11.5365 -1.0676 24 6 5.4760 -11.9736 -2.2479 25 6 4.4142 -11.3079 -2.8560 26 6 3.8659 -10.1951 -2.2879 27 6 4.3770 -9.7193 -1.0780 28 6 1.9320 -3.7274 0.0016 29 1 -0.4850 0.8399 -0.0004 30 1 -0.5991 -1.7592 -0.6155 31 1 -0.5289 -2.4857 1.0182 32 1 -0.3517 -3.8991 -1.6989 33 1 -1.3588 -4.3334 -0.2775 34 1 1.1919 -5.6943 1.7195 35 1 1.4077 -5.5594 -1.9208 36 1 0.2550 -6.5836 -1.0317 37 1 2.6332 -6.4016 0.4805 38 1 4.0460 -7.2768 1.3045 39 1 6.7732 -10.3990 1.2489 40 1 6.8197 -12.0640 -0.6075 41 1 5.8917 -12.8519 -2.7191 42 1 4.0205 -11.6769 -3.7915 43 1 3.0409 -9.6892 -2.7671 44 1 2.5283 -3.8637 0.9038 45 1 2.5586 -3.8514 -0.8816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724425591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:48 Heat of formation + Delta-G solvation = -16.047522 kcal Electronic energy + Delta-G solvation = -28912.437612 eV Core-core repulsion = 24894.829395 eV Total energy + Delta-G solvation = -4017.608217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.99022 -40.84449 -39.74796 -38.36221 -36.88713 -35.46181 -34.08533 -33.77940 -32.18092 -31.57191 -30.86062 -29.57372 -27.55577 -26.18858 -25.02087 -24.51540 -23.56082 -22.43345 -21.74529 -21.37721 -19.38359 -18.91321 -18.89175 -18.43574 -17.72386 -16.96012 -16.77776 -16.72620 -16.54272 -15.96996 -15.76153 -15.64236 -15.43492 -15.17489 -14.79187 -14.72072 -14.56138 -14.27022 -13.94000 -13.76005 -13.67807 -13.31663 -13.18088 -12.96110 -12.92036 -12.77371 -12.44990 -12.40884 -12.08933 -12.04568 -11.78884 -11.61361 -11.14003 -11.12971 -10.95460 -10.75587 -10.43790 -10.33790 -10.09524 -9.15385 -8.92462 -7.79340 -5.24502 -0.99665 -0.14104 0.64580 1.45970 1.47930 1.56481 1.69418 1.86975 2.16731 2.47442 3.04234 3.10331 3.18529 3.30249 3.40829 3.47810 3.59510 3.67871 3.70056 3.86095 3.87780 3.92905 3.98016 4.26619 4.31475 4.45384 4.47481 4.55629 4.59210 4.67305 4.75849 4.77088 4.89537 4.96668 5.01810 5.02768 5.09094 5.24918 5.40096 5.44447 5.49653 5.55684 5.59828 5.78044 5.89588 6.26179 6.28146 6.72585 6.80576 7.00508 7.07828 7.74602 8.38101 9.22700 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.002344 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.179918 B =11942.411618 C =12448.879764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.982 3.018 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.240 4.240 8 H 0.082 0.918 9 N -0.622 5.622 10 C 0.159 3.841 11 C -0.119 4.119 12 C 0.125 3.875 13 O -0.552 6.552 14 C 0.120 3.880 15 N -0.710 5.710 16 C 0.569 3.431 17 O -0.564 6.564 18 C -0.203 4.203 19 C 0.130 3.870 20 N -0.521 5.521 21 C 0.192 3.808 22 C -0.139 4.139 23 C -0.074 4.074 24 C -0.125 4.125 25 C -0.088 4.088 26 C -0.149 4.149 27 C -0.008 4.008 28 C 0.112 3.888 29 H 0.248 0.752 30 H 0.076 0.924 31 H -0.015 1.015 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.383 0.617 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.408 0.592 38 H 0.174 0.826 39 H 0.208 0.792 40 H 0.176 0.824 41 H 0.162 0.838 42 H 0.146 0.854 43 H 0.140 0.860 44 H 0.035 0.965 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.533 -27.544 -1.321 30.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.810 3.190 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.369 4.369 8 H 0.100 0.900 9 N -0.348 5.348 10 C 0.034 3.966 11 C -0.158 4.158 12 C 0.084 3.916 13 O -0.359 6.359 14 C -0.004 4.004 15 N -0.362 5.362 16 C 0.358 3.642 17 O -0.445 6.445 18 C -0.208 4.208 19 C -0.014 4.014 20 N -0.229 5.229 21 C 0.021 3.979 22 C -0.141 4.141 23 C -0.093 4.093 24 C -0.142 4.142 25 C -0.107 4.107 26 C -0.167 4.167 27 C -0.013 4.013 28 C -0.014 4.014 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.004 0.996 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.232 0.768 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.246 0.754 38 H 0.191 0.809 39 H 0.224 0.776 40 H 0.194 0.806 41 H 0.180 0.820 42 H 0.163 0.837 43 H 0.157 0.843 44 H 0.052 0.948 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.801 -26.834 -1.384 29.347 hybrid contribution 0.221 1.080 -0.255 1.131 sum 12.022 -25.755 -1.639 28.470 Atomic orbital electron populations 1.70044 1.06253 1.25127 1.58393 1.25662 0.96655 1.01089 1.02595 0.85034 0.77547 0.78928 0.77534 1.21119 1.22050 1.19482 1.19444 0.91016 0.83665 1.42797 0.90030 1.44696 1.02587 1.00723 1.86843 1.21660 0.84160 0.94216 0.96521 1.22906 0.97270 0.95333 1.00320 1.22218 0.95520 0.90995 0.82892 1.86618 1.44306 1.76273 1.28681 1.21838 0.89495 0.92233 0.96838 1.45722 1.35737 1.28018 1.26759 1.18054 0.82328 0.80027 0.83792 1.90634 1.61134 1.68829 1.23875 1.21774 1.00491 0.99296 0.99272 1.23039 0.90319 0.97506 0.90513 1.67241 1.11421 1.08966 1.35282 1.24036 0.95465 0.89129 0.89265 1.19318 0.97692 0.99032 0.98074 1.21467 0.99456 0.93365 0.95050 1.21407 0.95968 1.01001 0.95855 1.21524 0.95312 0.93683 1.00175 1.21687 1.01753 0.98057 0.95219 1.19174 0.94547 0.92799 0.94803 1.22139 0.94776 0.85683 0.98792 0.94251 0.90642 0.99649 0.89400 0.89434 0.76771 0.90676 0.89873 0.75435 0.80949 0.77550 0.80637 0.82048 0.83651 0.84291 0.94755 0.94650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.08 10.09 21.65 0.22 -56.86 16 2 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 3 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.24 -13.51 10.27 84.03 0.86 -12.65 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.62 -32.06 3.39 -692.01 -2.35 -34.41 16 10 C 0.16 8.03 5.88 86.86 0.51 8.54 16 11 C -0.12 -4.50 6.26 31.99 0.20 -4.30 16 12 C 0.13 4.09 0.92 -9.60 -0.01 4.08 16 13 O -0.55 -17.07 13.09 -148.98 -1.95 -19.03 16 14 C 0.12 3.31 4.74 86.38 0.41 3.72 16 15 N -0.71 -16.74 5.15 -466.33 -2.40 -19.14 16 16 C 0.57 15.36 7.77 86.67 0.67 16.03 16 17 O -0.56 -18.48 13.74 -4.05 -0.06 -18.54 16 18 C -0.20 -4.81 6.07 -18.59 -0.11 -4.92 16 19 C 0.13 2.60 10.71 84.81 0.91 3.51 16 20 N -0.52 -9.94 10.22 -193.72 -1.98 -11.92 16 21 C 0.19 2.67 11.00 85.31 0.94 3.61 16 22 C -0.14 -2.25 5.74 -21.33 -0.12 -2.37 16 23 C -0.07 -0.72 9.82 22.33 0.22 -0.50 16 24 C -0.12 -1.26 9.94 22.06 0.22 -1.04 16 25 C -0.09 -1.35 9.96 22.10 0.22 -1.13 16 26 C -0.15 -3.40 9.32 22.20 0.21 -3.19 16 27 C -0.01 -0.18 5.91 -19.94 -0.12 -0.30 16 28 C 0.11 4.39 6.30 86.73 0.55 4.93 16 29 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 30 H 0.08 4.30 5.88 -2.39 -0.01 4.28 16 31 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 32 H 0.09 3.10 8.05 -2.39 -0.02 3.08 16 33 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.38 8.28 7.78 -74.06 -0.58 7.70 16 35 H 0.07 2.23 8.06 -2.39 -0.02 2.21 16 36 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.41 7.62 5.37 -92.71 -0.50 7.12 16 38 H 0.17 2.61 6.44 -2.91 -0.02 2.59 16 39 H 0.21 0.98 8.06 -2.91 -0.02 0.95 16 40 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 41 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 42 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 43 H 0.14 3.83 5.24 -2.91 -0.02 3.82 16 44 H 0.03 1.28 8.07 -2.39 -0.02 1.26 16 45 H 0.04 1.38 7.76 -2.39 -0.02 1.36 16 Total: -1.00 -78.41 368.11 -0.50 -78.91 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -0.02 Total: 22.45 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 6.02 Total: 10.63 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -6.51 Total: -122.33 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -2.01 Total: -37.57 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -78.41 -0.50 -78.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724425591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.861 kcal (2) G-P(sol) polarization free energy of solvation -78.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds