Wall clock time and date at job start Sat Apr 11 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99557 * 2 1 4 4 H 1.48499 * 109.47011 * 274.98113 * 3 2 1 5 5 H 1.48490 * 109.47671 * 34.98624 * 3 2 1 6 6 H 1.48499 * 109.46694 * 154.98818 * 3 2 1 7 7 C 1.38808 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99901 * 185.06973 * 7 2 1 9 9 N 1.36938 * 119.99929 * 5.06339 * 7 2 1 10 10 C 1.47581 * 134.49184 * 173.48337 * 9 7 2 11 11 C 1.53952 * 86.11576 * 155.36376 * 10 9 7 12 12 O 1.42894 * 113.73801 * 269.15398 * 11 10 9 13 13 C 1.52995 * 113.74025 * 137.95233 * 11 10 9 14 14 N 1.46494 * 109.47232 * 184.99743 * 13 11 10 15 15 C 1.34774 * 120.00400 * 179.97438 * 14 13 11 16 16 O 1.21735 * 120.00317 * 0.02562 * 15 14 13 17 17 C 1.46401 * 120.00114 * 180.02562 * 15 14 13 18 18 N 1.37626 * 126.32774 * 0.15845 * 17 15 14 19 19 H 0.97003 * 125.55617 * 0.03083 * 18 17 15 20 20 C 1.35646 * 108.89790 * 180.29288 * 18 17 15 21 21 C 1.35125 * 109.22266 * 359.73665 * 20 18 17 22 22 C 1.39099 * 126.32439 * 180.02562 * 17 15 14 23 23 C 1.48175 * 126.63720 * 359.97438 * 22 17 15 24 24 C 1.39451 * 120.12861 * 309.43542 * 23 22 17 25 25 C 1.37992 * 119.86698 * 179.76763 * 24 23 22 26 26 C 1.38348 * 120.12795 * 0.49102 * 25 24 23 27 27 C 1.38338 * 120.26408 * 359.77985 * 26 25 24 28 28 C 1.37989 * 120.13676 * 359.96475 * 27 26 25 29 29 C 1.47581 * 134.49298 * 353.48951 * 9 7 2 30 30 H 0.97001 * 119.99743 * 0.02562 * 1 2 3 31 31 H 1.08998 * 113.76860 * 41.06010 * 10 9 7 32 32 H 1.09001 * 113.76654 * 269.66314 * 10 9 7 33 33 H 0.96704 * 113.99957 * 178.08228 * 12 11 10 34 34 H 1.09008 * 109.47481 * 64.99887 * 13 11 10 35 35 H 1.08995 * 109.47410 * 304.99985 * 13 11 10 36 36 H 0.97005 * 119.99771 * 0.02562 * 14 13 11 37 37 H 1.08001 * 125.38835 * 179.69417 * 20 18 17 38 38 H 1.07999 * 126.09672 * 179.97438 * 21 20 18 39 39 H 1.08006 * 120.06719 * 0.02562 * 24 23 22 40 40 H 1.07990 * 119.93445 * 180.24726 * 25 24 23 41 41 H 1.08000 * 119.86201 * 179.76919 * 26 25 24 42 42 H 1.08001 * 119.93107 * 179.97438 * 27 26 25 43 43 H 1.08004 * 120.06706 * 180.02562 * 28 27 26 44 44 H 1.08998 * 113.77319 * 90.33486 * 29 9 7 45 45 H 1.08998 * 113.76632 * 318.93639 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5964 1.4121 0.5920 7 6 2.0104 -1.2021 0.0005 8 1 3.0871 -1.2038 0.0832 9 7 1.3297 -2.3858 -0.1036 10 6 1.7288 -3.7985 -0.2549 11 6 0.3711 -4.1416 0.3845 12 8 0.4189 -4.2599 1.8077 13 6 -0.3478 -5.3131 -0.2877 14 7 -1.6732 -5.4821 0.3129 15 6 -2.4915 -6.4598 -0.1242 16 8 -2.1290 -7.2028 -1.0178 17 6 -3.8163 -6.6283 0.4756 18 7 -4.3573 -5.8651 1.4851 19 1 -3.9209 -5.1175 1.9228 20 6 -5.5980 -6.3322 1.7722 21 6 -5.8766 -7.3800 0.9657 22 6 -4.7618 -7.5877 0.1287 23 6 -4.6219 -8.6303 -0.9147 24 6 -4.2131 -8.2822 -2.2017 25 6 -4.0799 -9.2583 -3.1681 26 6 -4.3608 -10.5785 -2.8648 27 6 -4.7721 -10.9291 -1.5914 28 6 -4.9039 -9.9627 -0.6153 29 6 -0.0976 -2.7610 -0.1097 30 1 -0.4850 0.8401 -0.0004 31 1 2.5861 -4.0807 0.3563 32 1 1.8199 -4.1206 -1.2922 33 1 -0.4377 -4.4465 2.2159 34 1 0.2334 -6.2246 -0.1477 35 1 -0.4548 -5.1105 -1.3533 36 1 -1.9623 -4.8898 1.0247 37 1 -6.2583 -5.9306 2.5266 38 1 -6.7902 -7.9559 0.9635 39 1 -3.9972 -7.2513 -2.4406 40 1 -3.7596 -8.9904 -4.1640 41 1 -4.2587 -11.3384 -3.6254 42 1 -4.9904 -11.9614 -1.3607 43 1 -5.2247 -10.2377 0.3787 44 1 -0.5431 -2.7784 -1.1044 45 1 -0.6985 -2.2149 0.6174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724482649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:52 Heat of formation + Delta-G solvation = 51.648972 kcal Electronic energy + Delta-G solvation = -28842.524567 eV Core-core repulsion = 24827.851890 eV Total energy + Delta-G solvation = -4014.672677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.53713 -39.55417 -38.76605 -38.39264 -35.00881 -34.16449 -32.63486 -32.05192 -30.88223 -30.35303 -29.11646 -28.15300 -26.03793 -25.07053 -23.45425 -22.50274 -22.29477 -21.62651 -20.61871 -19.72281 -19.36418 -19.10802 -16.91407 -16.68801 -16.38670 -15.99497 -15.59253 -15.37278 -14.99279 -14.82328 -14.64578 -14.23230 -14.03184 -13.90264 -13.70118 -13.48314 -13.34687 -13.09845 -12.95720 -12.88653 -12.71633 -12.34736 -12.31767 -11.83002 -11.17178 -11.13730 -11.02928 -11.00790 -10.81201 -10.49889 -10.21219 -9.85843 -9.59364 -9.45477 -9.32722 -9.05539 -8.87346 -8.81662 -8.65645 -8.09284 -6.95270 -5.84934 -3.15662 0.97501 1.51485 1.61393 2.55265 2.84304 3.07098 3.29900 3.35800 3.41092 3.42844 3.91111 4.38269 4.42100 4.65008 4.71315 4.88368 4.93348 4.98332 5.03914 5.12737 5.17133 5.19265 5.20634 5.49738 5.52721 5.55292 5.63063 5.68890 5.88162 5.98166 6.04414 6.12035 6.21348 6.32352 6.36483 6.44736 6.49376 6.50913 6.57856 6.64378 6.75225 6.94259 7.04764 7.05464 7.11368 7.40551 7.43895 7.89307 8.00645 8.13809 8.97474 9.63680 10.50070 11.33062 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018235 B = 0.002400 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.137204 B =11665.765741 C =12329.747994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.219 4.219 8 H 0.082 0.918 9 N -0.602 5.602 10 C 0.136 3.864 11 C 0.061 3.939 12 O -0.525 6.525 13 C 0.105 3.895 14 N -0.725 5.725 15 C 0.584 3.416 16 O -0.517 6.517 17 C -0.038 4.038 18 N -0.537 5.537 19 H 0.420 0.580 20 C 0.025 3.975 21 C -0.197 4.197 22 C -0.045 4.045 23 C -0.017 4.017 24 C -0.064 4.064 25 C -0.125 4.125 26 C -0.121 4.121 27 C -0.130 4.130 28 C -0.106 4.106 29 C 0.148 3.852 30 H 0.253 0.747 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.359 0.641 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.391 0.609 37 H 0.173 0.827 38 H 0.145 0.855 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.036 0.964 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.261 -18.292 1.835 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.346 4.346 8 H 0.100 0.900 9 N -0.328 5.328 10 C 0.010 3.990 11 C 0.019 3.981 12 O -0.328 6.328 13 C -0.019 4.019 14 N -0.377 5.377 15 C 0.371 3.629 16 O -0.392 6.392 17 C -0.152 4.152 18 N -0.133 5.133 19 H 0.257 0.743 20 C -0.110 4.110 21 C -0.221 4.221 22 C -0.054 4.054 23 C -0.018 4.018 24 C -0.082 4.082 25 C -0.143 4.143 26 C -0.140 4.140 27 C -0.149 4.149 28 C -0.124 4.124 29 C 0.022 3.978 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.204 0.796 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.224 0.776 37 H 0.190 0.810 38 H 0.163 0.837 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.054 0.946 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.156 -18.197 1.157 22.484 hybrid contribution -0.131 1.602 0.630 1.726 sum -13.286 -16.595 1.787 21.333 Atomic orbital electron populations 1.69818 1.05095 1.25382 1.56636 1.24807 0.95728 0.97593 1.02301 0.86084 0.78767 0.83342 0.77524 1.21575 1.21704 1.20486 1.19011 0.90809 0.81747 1.43084 0.90026 1.45648 1.01889 1.00586 1.84649 1.22562 0.93438 0.86359 0.96686 1.23820 0.99372 0.93634 0.81318 1.86641 1.33724 1.94171 1.18270 1.22070 0.81679 0.99502 0.98650 1.45840 1.17596 1.33904 1.40359 1.16959 0.82535 0.80778 0.82618 1.90892 1.74611 1.44201 1.29501 1.20488 0.96253 0.99780 0.98707 1.41998 1.14590 1.27212 1.29471 0.74269 1.21927 0.87280 0.98728 1.03041 1.20894 0.99981 1.01378 0.99881 1.18551 0.93399 0.95708 0.97729 1.18078 0.99899 0.91650 0.92129 1.21138 0.95467 0.99650 0.91956 1.21041 1.00711 0.93064 0.99450 1.21136 0.99898 0.96240 0.96678 1.20960 1.01413 0.98960 0.93520 1.21103 1.00247 0.91940 0.99113 1.22829 0.88899 0.87905 0.98196 0.93681 0.92615 0.93112 0.79562 0.90862 0.90003 0.77576 0.80976 0.83749 0.86240 0.86298 0.86547 0.86394 0.86302 0.94611 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.86 11.51 55.49 0.64 -26.22 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.05 29.56 -169.99 -5.02 17.02 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.60 -15.29 3.70 -177.79 -0.66 -15.95 16 10 C 0.14 2.76 8.34 -2.97 -0.02 2.74 16 11 C 0.06 1.09 1.52 -89.69 -0.14 0.95 16 12 O -0.52 -9.16 13.51 -35.23 -0.48 -9.63 16 13 C 0.11 1.56 5.28 -4.05 -0.02 1.54 16 14 N -0.72 -9.13 5.33 -61.71 -0.33 -9.46 16 15 C 0.58 8.17 7.76 -12.98 -0.10 8.07 16 16 O -0.52 -8.72 13.45 5.16 0.07 -8.65 16 17 C -0.04 -0.46 7.07 -81.66 -0.58 -1.04 16 18 N -0.54 -4.54 5.98 -9.23 -0.06 -4.60 16 19 H 0.42 2.48 8.18 -40.82 -0.33 2.14 16 20 C 0.03 0.19 11.86 -16.97 -0.20 -0.01 16 21 C -0.20 -1.86 10.73 -39.67 -0.43 -2.28 16 22 C -0.05 -0.55 5.66 -104.47 -0.59 -1.14 16 23 C -0.02 -0.22 5.26 -104.91 -0.55 -0.77 16 24 C -0.06 -0.86 7.64 -39.22 -0.30 -1.16 16 25 C -0.12 -1.48 10.03 -39.63 -0.40 -1.88 16 26 C -0.12 -1.28 10.04 -39.50 -0.40 -1.68 16 27 C -0.13 -1.34 10.03 -39.64 -0.40 -1.74 16 28 C -0.11 -1.19 9.74 -39.22 -0.38 -1.57 16 29 C 0.15 3.28 6.83 -2.97 -0.02 3.26 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.36 4.53 7.61 45.56 0.35 4.88 16 34 H 0.07 1.09 8.14 -51.92 -0.42 0.66 16 35 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 36 H 0.39 4.00 6.43 -40.82 -0.26 3.74 16 37 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.70 7.38 -52.48 -0.39 1.32 16 40 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 44 H 0.04 0.82 8.03 -51.93 -0.42 0.40 16 45 H 0.07 1.76 7.35 -51.93 -0.38 1.38 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -35.71 380.25 -10.09 -45.80 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.20 Total: 9.31 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -4.78 Total: -3.35 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.40 Total: -56.23 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.41 Total: -18.28 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.71 -10.09 -45.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724482649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.449 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds