Wall clock time and date at job start Sat Apr 11 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99737 * 2 1 4 4 H 1.48496 * 109.46894 * 85.00654 * 3 2 1 5 5 H 1.48499 * 109.46920 * 205.00585 * 3 2 1 6 6 H 1.48500 * 109.46957 * 325.00630 * 3 2 1 7 7 C 1.38801 * 119.99896 * 180.27907 * 2 1 3 8 8 H 1.08005 * 120.00080 * 185.02065 * 7 2 1 9 9 N 1.36939 * 120.00517 * 5.02493 * 7 2 1 10 10 C 1.47068 * 136.05047 * 4.98771 * 9 7 2 11 11 C 1.53763 * 87.88299 * 152.96974 * 10 9 7 12 12 C 1.52996 * 114.39005 * 272.67254 * 11 10 9 13 13 C 1.53001 * 109.47132 * 159.50630 * 12 11 10 14 14 O 1.42905 * 109.47304 * 184.65005 * 13 12 11 15 15 N 1.46506 * 114.26624 * 139.79381 * 11 10 9 16 16 C 1.34771 * 119.99745 * 79.74752 * 15 11 10 17 17 O 1.21596 * 120.00729 * 2.99734 * 16 15 11 18 18 C 1.47457 * 119.99687 * 183.00659 * 16 15 11 19 19 C 1.38863 * 120.45807 * 6.15377 * 18 16 15 20 20 C 1.38906 * 120.67044 * 180.02562 * 19 18 16 21 21 C 1.36367 * 121.27634 * 359.97438 * 20 19 18 22 22 C 1.40391 * 119.98730 * 0.02562 * 21 20 19 23 23 C 1.40467 * 121.95696 * 180.02562 * 22 21 20 24 24 N 1.31287 * 119.87881 * 179.19603 * 23 22 21 25 25 C 1.32551 * 122.73508 * 0.78792 * 24 23 22 26 26 C 1.36333 * 121.81914 * 359.45609 * 25 24 23 27 27 C 1.40298 * 118.70222 * 0.02562 * 26 25 24 28 28 C 1.47063 * 136.06132 * 185.36411 * 9 7 2 29 29 H 0.97003 * 119.99894 * 359.97438 * 1 2 3 30 30 H 1.09002 * 113.46778 * 267.69680 * 10 9 7 31 31 H 1.08988 * 113.47144 * 38.14210 * 10 9 7 32 32 H 1.09001 * 109.47711 * 279.50785 * 12 11 10 33 33 H 1.08998 * 109.47426 * 39.50857 * 12 11 10 34 34 H 1.08999 * 109.47076 * 304.65142 * 13 12 11 35 35 H 1.09005 * 109.47059 * 64.64697 * 13 12 11 36 36 H 0.96701 * 113.99745 * 180.02562 * 14 13 12 37 37 H 0.96997 * 119.99475 * 259.74454 * 15 11 10 38 38 H 1.08002 * 119.66864 * 0.02980 * 19 18 16 39 39 H 1.08001 * 119.35912 * 180.02562 * 20 19 18 40 40 H 1.08008 * 120.00616 * 179.97438 * 21 20 19 41 41 H 1.08004 * 120.05671 * 359.96816 * 23 22 21 42 42 H 1.07991 * 119.09229 * 179.48580 * 25 24 23 43 43 H 1.07993 * 120.64929 * 180.02562 * 26 25 24 44 44 H 1.08998 * 113.46975 * 321.86409 * 28 9 7 45 45 H 1.09007 * 113.46726 * 92.24331 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3921 2.1074 1.3947 5 1 3.5965 1.4121 -0.5918 6 1 1.5043 2.6199 -0.8029 7 6 2.0103 -1.2021 -0.0059 8 1 3.0872 -1.2043 0.0760 9 7 1.3296 -2.3852 -0.1155 10 6 -0.0689 -2.7862 -0.3307 11 6 0.4603 -4.0842 -0.9628 12 6 0.7546 -3.9831 -2.4608 13 6 1.7188 -5.0992 -2.8676 14 8 2.0786 -4.9407 -4.2415 15 7 -0.3001 -5.2833 -0.6017 16 6 -1.4628 -5.5572 -1.2257 17 8 -1.8538 -4.8391 -2.1257 18 6 -2.2611 -6.7276 -0.8167 19 6 -1.8912 -7.4798 0.2904 20 6 -2.6397 -8.5835 0.6792 21 6 -3.7547 -8.9609 -0.0091 22 6 -4.1656 -8.2294 -1.1347 23 6 -5.3073 -8.5809 -1.8737 24 7 -5.6633 -7.8585 -2.9105 25 6 -4.9776 -6.7987 -3.3151 26 6 -3.8532 -6.3799 -2.6678 27 6 -3.4166 -7.0967 -1.5435 28 6 1.6742 -3.8140 -0.0632 29 1 -0.4850 0.8401 0.0004 30 1 -0.6214 -2.9481 0.5949 31 1 -0.6011 -2.1451 -1.0332 32 1 -0.1748 -4.0836 -3.0214 33 1 1.2069 -3.0154 -2.6778 34 1 2.6149 -5.0486 -2.2491 35 1 1.2351 -6.0661 -2.7278 36 1 2.6892 -5.6156 -4.5685 37 1 0.0335 -5.8800 0.0864 38 1 -1.0128 -7.2039 0.8549 39 1 -2.3330 -9.1533 1.5440 40 1 -4.3212 -9.8230 0.3111 41 1 -5.8982 -9.4365 -1.5819 42 1 -5.3193 -6.2515 -4.1812 43 1 -3.3093 -5.5135 -3.0136 44 1 2.6270 -4.0483 -0.5379 45 1 1.5822 -4.2465 0.9331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725207621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:57 Heat of formation + Delta-G solvation = 42.333687 kcal Electronic energy + Delta-G solvation = -29625.880513 eV Core-core repulsion = 25610.803895 eV Total energy + Delta-G solvation = -4015.076618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.20052 -39.95642 -38.16006 -37.21785 -36.45227 -33.89689 -33.01651 -32.17195 -31.23511 -30.48179 -29.65401 -27.20649 -25.01372 -24.90346 -24.00456 -23.53927 -22.88403 -21.80340 -20.47907 -18.94839 -18.16204 -17.85276 -17.16182 -16.79125 -16.58618 -16.32984 -15.62113 -15.27914 -15.02118 -14.94981 -14.71053 -14.35303 -14.10879 -13.95446 -13.75787 -13.61371 -13.41716 -12.77290 -12.68907 -12.28832 -12.21573 -11.97503 -11.83757 -11.66453 -11.56581 -11.16603 -10.99270 -10.89307 -10.71226 -10.31049 -10.19488 -10.07069 -9.87702 -9.68090 -9.42440 -9.33408 -9.02497 -8.84604 -8.67893 -8.22633 -6.98960 -5.83337 -3.17098 -0.04662 0.69226 1.55921 2.58603 3.20042 3.29716 3.37480 3.42548 3.45017 3.98307 4.29060 4.32579 4.41351 4.43435 4.44166 4.54048 4.70836 4.76943 4.88550 4.97689 5.21667 5.28506 5.37135 5.44032 5.48843 5.50964 5.56768 5.69618 5.75625 5.79263 5.83294 5.86363 5.98624 6.11867 6.20072 6.27924 6.38294 6.46655 6.48765 6.64922 6.81930 6.86740 7.14781 7.24378 7.47807 7.71924 7.83562 7.85094 7.89562 8.40508 8.96163 9.63045 10.52490 11.34325 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014566 B = 0.002942 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.814023 B = 9514.287755 C = 9749.847636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.003 4.003 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.279 1.279 6 H -0.288 1.288 7 C -0.224 4.224 8 H 0.084 0.916 9 N -0.598 5.598 10 C 0.166 3.834 11 C 0.118 3.882 12 C -0.100 4.100 13 C 0.083 3.917 14 O -0.572 6.572 15 N -0.704 5.704 16 C 0.559 3.441 17 O -0.520 6.520 18 C -0.119 4.119 19 C -0.061 4.061 20 C -0.129 4.129 21 C -0.064 4.064 22 C -0.120 4.120 23 C 0.135 3.865 24 N -0.487 5.487 25 C 0.069 3.931 26 C -0.148 4.148 27 C 0.010 3.990 28 C 0.116 3.884 29 H 0.256 0.744 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.034 0.966 36 H 0.371 0.629 37 H 0.395 0.605 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.162 0.838 42 H 0.154 0.846 43 H 0.179 0.821 44 H 0.048 0.952 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.513 -21.817 -0.194 22.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.200 4.200 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.204 1.204 6 H -0.215 1.215 7 C -0.351 4.351 8 H 0.101 0.899 9 N -0.323 5.323 10 C 0.039 3.961 11 C 0.032 3.968 12 C -0.138 4.138 13 C 0.005 3.995 14 O -0.376 6.376 15 N -0.355 5.355 16 C 0.346 3.654 17 O -0.398 6.398 18 C -0.122 4.122 19 C -0.082 4.082 20 C -0.147 4.147 21 C -0.085 4.085 22 C -0.122 4.122 23 C -0.036 4.036 24 N -0.195 5.195 25 C -0.073 4.073 26 C -0.167 4.167 27 C 0.004 3.996 28 C -0.011 4.011 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.216 0.784 37 H 0.230 0.770 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.179 0.821 42 H 0.172 0.828 43 H 0.196 0.804 44 H 0.067 0.933 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.852 -20.443 -1.335 21.306 hybrid contribution 1.673 0.248 1.254 2.106 sum -4.178 -20.195 -0.081 20.623 Atomic orbital electron populations 1.69857 1.05061 1.25675 1.55324 1.24852 0.95684 0.97732 1.01762 0.86077 0.78743 0.83291 0.77481 1.21581 1.20405 1.21464 1.18868 0.90214 0.80978 1.44991 0.89863 1.45305 1.04413 0.98838 1.83783 1.22356 0.88526 0.88676 0.96538 1.22778 0.94236 0.85001 0.94778 1.21386 1.00315 0.99377 0.92741 1.22162 0.97524 0.98044 0.81741 1.86533 1.68399 1.55615 1.27082 1.45942 1.22096 1.27089 1.40397 1.17968 0.81060 0.84081 0.82280 1.90577 1.69461 1.50034 1.29745 1.20038 0.96842 0.97581 0.97765 1.21528 0.98709 0.93512 0.94419 1.20829 0.95765 0.97394 1.00754 1.21148 0.95936 0.98286 0.93087 1.19025 0.98049 0.96941 0.98194 1.23143 0.92584 0.97616 0.90295 1.67392 1.31641 1.06191 1.14264 1.22364 0.92386 0.93120 0.99479 1.23037 0.97563 1.01685 0.94379 1.17956 0.93201 0.93724 0.94722 1.22684 0.94885 0.88003 0.95509 0.93426 0.95147 0.91033 0.88906 0.89038 0.93871 0.94818 0.78356 0.77044 0.84941 0.84903 0.84654 0.82090 0.82820 0.80427 0.93345 0.94772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.23 11.73 55.49 0.65 -26.58 16 2 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 3 Si 0.91 22.02 29.56 -169.99 -5.02 16.99 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.22 -6.14 10.74 -15.06 -0.16 -6.30 16 8 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 9 N -0.60 -14.86 3.54 -184.57 -0.65 -15.51 16 10 C 0.17 3.92 6.64 -8.36 -0.06 3.86 16 11 C 0.12 2.16 0.82 -131.56 -0.11 2.05 16 12 C -0.10 -1.89 4.89 -26.73 -0.13 -2.02 16 13 C 0.08 1.27 6.88 37.16 0.26 1.52 16 14 O -0.57 -8.79 13.66 -35.23 -0.48 -9.27 16 15 N -0.70 -10.12 5.15 -48.36 -0.25 -10.37 16 16 C 0.56 8.65 7.52 -12.51 -0.09 8.56 16 17 O -0.52 -9.71 11.27 5.28 0.06 -9.65 16 18 C -0.12 -1.53 5.90 -104.70 -0.62 -2.14 16 19 C -0.06 -0.58 9.50 -39.10 -0.37 -0.95 16 20 C -0.13 -0.98 9.92 -40.01 -0.40 -1.37 16 21 C -0.06 -0.50 9.78 -39.45 -0.39 -0.89 16 22 C -0.12 -1.30 5.74 -106.88 -0.61 -1.91 16 23 C 0.14 1.40 11.05 -16.95 -0.19 1.21 16 24 N -0.49 -6.13 10.30 -13.11 -0.14 -6.27 16 25 C 0.07 0.89 11.07 -17.93 -0.20 0.69 16 26 C -0.15 -2.08 9.28 -39.49 -0.37 -2.45 16 27 C 0.01 0.13 5.77 -106.55 -0.61 -0.48 16 28 C 0.12 2.20 7.81 -8.51 -0.07 2.14 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.96 7.46 -51.94 -0.39 1.57 16 32 H 0.09 1.89 5.80 -51.93 -0.30 1.59 16 33 H 0.09 2.03 7.94 -51.93 -0.41 1.62 16 34 H 0.04 0.62 6.68 -51.93 -0.35 0.27 16 35 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.37 3.65 9.12 45.56 0.42 4.06 16 37 H 0.39 4.29 6.78 -40.82 -0.28 4.02 16 38 H 0.13 0.93 6.46 -52.49 -0.34 0.59 16 39 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 41 H 0.16 1.06 8.06 -52.48 -0.42 0.63 16 42 H 0.15 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.18 2.80 5.06 -52.49 -0.27 2.53 16 44 H 0.05 0.86 6.74 -51.93 -0.35 0.51 16 45 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -35.37 370.16 -9.23 -44.60 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -4.77 Total: 9.14 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -4.21 Total: 1.34 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.39 Total: -58.73 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.42 Total: -18.92 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.37 -9.23 -44.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725207621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.938 kcal (2) G-P(sol) polarization free energy of solvation -35.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds