Wall clock time and date at job start Sat Apr 11 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99737 * 2 1 4 4 H 1.48496 * 109.46894 * 85.00654 * 3 2 1 5 5 H 1.48499 * 109.46920 * 205.00585 * 3 2 1 6 6 H 1.48500 * 109.46957 * 325.00630 * 3 2 1 7 7 C 1.38801 * 119.99896 * 180.27907 * 2 1 3 8 8 H 1.08005 * 120.00080 * 185.02065 * 7 2 1 9 9 N 1.36939 * 120.00517 * 5.02493 * 7 2 1 10 10 C 1.47068 * 136.05047 * 4.98771 * 9 7 2 11 11 C 1.53763 * 87.88299 * 152.96974 * 10 9 7 12 12 C 1.52996 * 114.39005 * 272.67254 * 11 10 9 13 13 C 1.53001 * 109.47132 * 159.50630 * 12 11 10 14 14 O 1.42905 * 109.47304 * 184.65005 * 13 12 11 15 15 N 1.46506 * 114.26624 * 139.79381 * 11 10 9 16 16 C 1.34771 * 119.99745 * 79.74752 * 15 11 10 17 17 O 1.21596 * 120.00729 * 2.99734 * 16 15 11 18 18 C 1.47457 * 119.99687 * 183.00659 * 16 15 11 19 19 C 1.38863 * 120.45807 * 6.15377 * 18 16 15 20 20 C 1.38906 * 120.67044 * 180.02562 * 19 18 16 21 21 C 1.36367 * 121.27634 * 359.97438 * 20 19 18 22 22 C 1.40391 * 119.98730 * 0.02562 * 21 20 19 23 23 C 1.40467 * 121.95696 * 180.02562 * 22 21 20 24 24 N 1.31287 * 119.87881 * 179.19603 * 23 22 21 25 25 C 1.32551 * 122.73508 * 0.78792 * 24 23 22 26 26 C 1.36333 * 121.81914 * 359.45609 * 25 24 23 27 27 C 1.40298 * 118.70222 * 0.02562 * 26 25 24 28 28 C 1.47063 * 136.06132 * 185.36411 * 9 7 2 29 29 H 0.97003 * 119.99894 * 359.97438 * 1 2 3 30 30 H 1.09002 * 113.46778 * 267.69680 * 10 9 7 31 31 H 1.08988 * 113.47144 * 38.14210 * 10 9 7 32 32 H 1.09001 * 109.47711 * 279.50785 * 12 11 10 33 33 H 1.08998 * 109.47426 * 39.50857 * 12 11 10 34 34 H 1.08999 * 109.47076 * 304.65142 * 13 12 11 35 35 H 1.09005 * 109.47059 * 64.64697 * 13 12 11 36 36 H 0.96701 * 113.99745 * 180.02562 * 14 13 12 37 37 H 0.96997 * 119.99475 * 259.74454 * 15 11 10 38 38 H 1.08002 * 119.66864 * 0.02980 * 19 18 16 39 39 H 1.08001 * 119.35912 * 180.02562 * 20 19 18 40 40 H 1.08008 * 120.00616 * 179.97438 * 21 20 19 41 41 H 1.08004 * 120.05671 * 359.96816 * 23 22 21 42 42 H 1.07991 * 119.09229 * 179.48580 * 25 24 23 43 43 H 1.07993 * 120.64929 * 180.02562 * 26 25 24 44 44 H 1.08998 * 113.46975 * 321.86409 * 28 9 7 45 45 H 1.09007 * 113.46726 * 92.24331 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3921 2.1074 1.3947 5 1 3.5965 1.4121 -0.5918 6 1 1.5043 2.6199 -0.8029 7 6 2.0103 -1.2021 -0.0059 8 1 3.0872 -1.2043 0.0760 9 7 1.3296 -2.3852 -0.1155 10 6 -0.0689 -2.7862 -0.3307 11 6 0.4603 -4.0842 -0.9628 12 6 0.7546 -3.9831 -2.4608 13 6 1.7188 -5.0992 -2.8676 14 8 2.0786 -4.9407 -4.2415 15 7 -0.3001 -5.2833 -0.6017 16 6 -1.4628 -5.5572 -1.2257 17 8 -1.8538 -4.8391 -2.1257 18 6 -2.2611 -6.7276 -0.8167 19 6 -1.8912 -7.4798 0.2904 20 6 -2.6397 -8.5835 0.6792 21 6 -3.7547 -8.9609 -0.0091 22 6 -4.1656 -8.2294 -1.1347 23 6 -5.3073 -8.5809 -1.8737 24 7 -5.6633 -7.8585 -2.9105 25 6 -4.9776 -6.7987 -3.3151 26 6 -3.8532 -6.3799 -2.6678 27 6 -3.4166 -7.0967 -1.5435 28 6 1.6742 -3.8140 -0.0632 29 1 -0.4850 0.8401 0.0004 30 1 -0.6214 -2.9481 0.5949 31 1 -0.6011 -2.1451 -1.0332 32 1 -0.1748 -4.0836 -3.0214 33 1 1.2069 -3.0154 -2.6778 34 1 2.6149 -5.0486 -2.2491 35 1 1.2351 -6.0661 -2.7278 36 1 2.6892 -5.6156 -4.5685 37 1 0.0335 -5.8800 0.0864 38 1 -1.0128 -7.2039 0.8549 39 1 -2.3330 -9.1533 1.5440 40 1 -4.3212 -9.8230 0.3111 41 1 -5.8982 -9.4365 -1.5819 42 1 -5.3193 -6.2515 -4.1812 43 1 -3.3093 -5.5135 -3.0136 44 1 2.6270 -4.0483 -0.5379 45 1 1.5822 -4.2465 0.9331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725207621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:56 Heat of formation + Delta-G solvation = 14.607864 kcal Electronic energy + Delta-G solvation = -29627.082795 eV Core-core repulsion = 25610.803895 eV Total energy + Delta-G solvation = -4016.278900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.16971 -41.27998 -39.51477 -38.09174 -37.72232 -35.41488 -34.08863 -33.75971 -32.29691 -31.78087 -30.59901 -29.09550 -26.72579 -25.93274 -25.19974 -24.39593 -24.08981 -23.43369 -21.67627 -20.38605 -19.07867 -18.83725 -18.76508 -18.34036 -17.52780 -17.25474 -17.13180 -16.75682 -16.31846 -16.07682 -15.92144 -15.64808 -15.42704 -15.14850 -14.96020 -14.75540 -14.49140 -14.39611 -13.80712 -13.52346 -13.25368 -13.22288 -13.02857 -12.95464 -12.89355 -12.83365 -12.74153 -12.50249 -12.33815 -12.06567 -11.79639 -11.31374 -11.15459 -11.03007 -10.90033 -10.65753 -10.21522 -10.15974 -10.06544 -9.09068 -9.00771 -7.96195 -5.30596 -0.84993 -0.10814 0.65350 1.42898 1.46127 1.55144 1.75070 1.97988 2.27306 2.46537 3.08893 3.11873 3.27740 3.32642 3.51681 3.55553 3.67896 3.69519 3.81286 3.93611 3.96959 4.12259 4.21750 4.26844 4.29608 4.43001 4.44178 4.56707 4.61018 4.70041 4.75828 4.83750 4.89289 4.93519 5.04543 5.11762 5.15238 5.16671 5.26140 5.31241 5.40528 5.43493 5.65358 5.72462 5.81632 5.83584 6.56408 6.82588 6.92213 6.97697 7.25927 7.54450 8.51248 9.22145 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014566 B = 0.002942 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.814023 B = 9514.287755 C = 9749.847636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.069 4.069 3 Si 0.981 3.019 4 H -0.283 1.283 5 H -0.262 1.262 6 H -0.299 1.299 7 C -0.226 4.226 8 H 0.096 0.904 9 N -0.628 5.628 10 C 0.162 3.838 11 C 0.151 3.849 12 C -0.096 4.096 13 C 0.095 3.905 14 O -0.595 6.595 15 N -0.691 5.691 16 C 0.555 3.445 17 O -0.564 6.564 18 C -0.160 4.160 19 C -0.038 4.038 20 C -0.130 4.130 21 C -0.042 4.042 22 C -0.136 4.136 23 C 0.150 3.850 24 N -0.515 5.515 25 C 0.066 3.934 26 C -0.184 4.184 27 C -0.008 4.008 28 C 0.126 3.874 29 H 0.247 0.753 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.397 0.603 37 H 0.416 0.584 38 H 0.159 0.841 39 H 0.177 0.823 40 H 0.182 0.818 41 H 0.206 0.794 42 H 0.159 0.841 43 H 0.149 0.851 44 H 0.071 0.929 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.234 -26.416 2.250 26.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.809 3.191 4 H -0.210 1.210 5 H -0.186 1.186 6 H -0.226 1.226 7 C -0.353 4.353 8 H 0.113 0.887 9 N -0.354 5.354 10 C 0.035 3.965 11 C 0.064 3.936 12 C -0.135 4.135 13 C 0.017 3.983 14 O -0.403 6.403 15 N -0.344 5.344 16 C 0.345 3.655 17 O -0.444 6.444 18 C -0.163 4.163 19 C -0.058 4.058 20 C -0.147 4.147 21 C -0.061 4.061 22 C -0.138 4.138 23 C -0.022 4.022 24 N -0.223 5.223 25 C -0.076 4.076 26 C -0.203 4.203 27 C -0.014 4.014 28 C 0.001 3.999 29 H 0.056 0.944 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.246 0.754 37 H 0.255 0.745 38 H 0.177 0.823 39 H 0.194 0.806 40 H 0.199 0.801 41 H 0.223 0.777 42 H 0.177 0.823 43 H 0.166 0.834 44 H 0.089 0.911 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.519 -25.122 1.124 25.550 hybrid contribution 1.208 1.491 0.535 1.992 sum -3.311 -23.631 1.659 23.920 Atomic orbital electron populations 1.70077 1.06827 1.25691 1.57756 1.25749 0.96457 1.01358 1.02672 0.85019 0.77904 0.78783 0.77385 1.20993 1.18642 1.22611 1.19341 0.91028 0.82232 1.42745 0.88667 1.45552 1.04978 1.00793 1.84091 1.22248 0.88061 0.91051 0.95166 1.22006 0.93394 0.84154 0.94080 1.21234 1.00109 0.98997 0.93158 1.21981 0.97254 0.96841 0.82175 1.86473 1.69477 1.57296 1.27066 1.45596 1.21768 1.25992 1.41047 1.18541 0.80984 0.84566 0.81441 1.90593 1.70371 1.51746 1.31723 1.19776 0.97709 0.98235 1.00554 1.21962 0.98980 0.92642 0.92167 1.21333 0.95052 0.96621 1.01718 1.21708 0.95598 0.98163 0.90654 1.19328 0.98154 0.96649 0.99717 1.23928 0.92143 0.97514 0.88619 1.67468 1.32174 1.06694 1.15958 1.22446 0.92035 0.93506 0.99576 1.22816 0.98798 1.02180 0.96508 1.18195 0.93927 0.94732 0.94496 1.22828 0.95749 0.84349 0.96998 0.94410 0.96542 0.96466 0.91323 0.93269 0.91949 0.92771 0.75357 0.74479 0.82345 0.80565 0.80088 0.77742 0.82329 0.83403 0.91101 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.42 11.73 21.65 0.25 -60.17 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.98 46.62 29.56 68.60 2.03 48.65 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 5 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 7 C -0.23 -12.62 10.74 84.03 0.90 -11.71 16 8 H 0.10 4.95 7.83 -2.91 -0.02 4.93 16 9 N -0.63 -31.97 3.54 -737.85 -2.61 -34.59 16 10 C 0.16 8.16 6.64 83.27 0.55 8.71 16 11 C 0.15 5.63 0.82 4.16 0.00 5.63 16 12 C -0.10 -3.83 4.89 30.59 0.15 -3.68 16 13 C 0.09 2.80 6.88 71.98 0.50 3.30 16 14 O -0.59 -17.87 13.66 -148.98 -2.04 -19.90 16 15 N -0.69 -19.51 5.15 -425.16 -2.19 -21.70 16 16 C 0.56 17.85 7.52 86.67 0.65 18.50 16 17 O -0.56 -23.25 11.27 -4.02 -0.05 -23.29 16 18 C -0.16 -4.00 5.90 -19.92 -0.12 -4.11 16 19 C -0.04 -0.56 9.50 22.58 0.21 -0.35 16 20 C -0.13 -1.20 9.92 21.99 0.22 -0.98 16 21 C -0.04 -0.42 9.78 22.36 0.22 -0.20 16 22 C -0.14 -2.59 5.74 -21.33 -0.12 -2.72 16 23 C 0.15 2.70 11.05 85.32 0.94 3.64 16 24 N -0.51 -12.79 10.30 -195.39 -2.01 -14.80 16 25 C 0.07 1.83 11.07 84.14 0.93 2.76 16 26 C -0.18 -5.70 9.28 22.33 0.21 -5.50 16 27 C -0.01 -0.21 5.77 -21.11 -0.12 -0.33 16 28 C 0.13 4.60 7.81 83.18 0.65 5.25 16 29 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.02 1.02 7.46 -2.39 -0.02 1.00 16 32 H 0.07 3.06 5.80 -2.39 -0.01 3.05 16 33 H 0.05 2.34 7.94 -2.39 -0.02 2.32 16 34 H 0.06 1.61 6.68 -2.39 -0.02 1.60 16 35 H 0.05 1.40 8.12 -2.38 -0.02 1.38 16 36 H 0.40 7.05 9.12 -74.06 -0.68 6.38 16 37 H 0.42 7.88 6.78 -92.71 -0.63 7.26 16 38 H 0.16 1.43 6.46 -2.91 -0.02 1.41 16 39 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 40 H 0.18 0.22 8.06 -2.91 -0.02 0.19 16 41 H 0.21 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.16 3.85 8.06 -2.92 -0.02 3.83 16 43 H 0.15 5.43 5.06 -2.91 -0.01 5.41 16 44 H 0.07 2.31 6.74 -2.39 -0.02 2.29 16 45 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -87.32 370.16 -0.62 -87.94 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -0.24 Total: 23.22 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 6.24 Total: 14.64 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -6.56 Total: -131.26 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -2.08 Total: -43.19 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -87.32 -0.62 -87.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725207621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.550 kcal (2) G-P(sol) polarization free energy of solvation -87.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds