Wall clock time and date at job start Sat Apr 11 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47261 * 269.99748 * 3 2 1 5 5 H 1.48494 * 109.47064 * 29.99997 * 3 2 1 6 6 H 1.48500 * 109.46988 * 149.99655 * 3 2 1 7 7 C 1.38816 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00281 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00152 * 180.02562 * 7 2 1 10 10 C 1.46494 * 120.00415 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.46977 * 35.00338 * 10 9 7 12 12 C 1.52999 * 109.47235 * 155.00012 * 10 9 7 13 13 N 1.46500 * 109.47528 * 305.00172 * 12 10 9 14 14 C 1.34773 * 120.00431 * 180.02562 * 13 12 10 15 15 O 1.21613 * 119.99881 * 359.97438 * 14 13 12 16 16 C 1.47463 * 120.00183 * 179.72685 * 14 13 12 17 17 C 1.36228 * 126.36679 * 179.97438 * 16 14 13 18 18 O 1.34274 * 107.12521 * 179.89969 * 17 16 14 19 19 C 1.34482 * 108.16838 * 0.35754 * 18 17 16 20 20 C 1.47875 * 125.49093 * 179.74989 * 19 18 17 21 21 C 1.39547 * 120.13948 * 179.75342 * 20 19 18 22 22 C 1.37974 * 119.85002 * 179.70109 * 21 20 19 23 23 C 1.38345 * 120.14120 * 0.59436 * 22 21 20 24 24 C 1.38353 * 120.29100 * 359.67955 * 23 22 21 25 25 C 1.37968 * 120.13990 * 0.02562 * 24 23 22 26 26 N 1.30893 * 109.01942 * 359.77432 * 19 18 17 27 27 C 1.53001 * 109.47195 * 275.00221 * 10 9 7 28 28 C 1.53003 * 117.49720 * 128.74454 * 27 10 9 29 29 C 1.53001 * 117.49724 * 60.08521 * 27 10 9 30 30 H 0.97001 * 120.00099 * 0.02562 * 1 2 3 31 31 H 0.97009 * 119.99674 * 0.02562 * 9 7 2 32 32 H 1.09009 * 109.47378 * 185.00268 * 12 10 9 33 33 H 1.08993 * 109.47209 * 65.00360 * 12 10 9 34 34 H 0.97000 * 119.99456 * 359.97438 * 13 12 10 35 35 H 1.08000 * 126.43595 * 359.97438 * 17 16 14 36 36 H 1.07995 * 120.07400 * 0.02562 * 21 20 19 37 37 H 1.07995 * 119.92485 * 180.29761 * 22 21 20 38 38 H 1.08007 * 119.85340 * 179.69904 * 23 22 21 39 39 H 1.08002 * 119.92655 * 180.02562 * 24 23 22 40 40 H 1.07999 * 120.06589 * 180.02562 * 25 24 23 41 41 H 1.09003 * 115.54813 * 274.41260 * 27 10 9 42 42 H 1.08998 * 117.49942 * 0.02562 * 28 27 10 43 43 H 1.09004 * 117.49569 * 145.01937 * 28 27 10 44 44 H 1.08996 * 117.49555 * 214.97657 * 29 27 10 45 45 H 1.09001 * 117.50112 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5649 -3.2063 -0.5888 12 6 5.4995 -2.2588 -0.6080 13 7 5.3626 -1.6633 -1.9395 14 6 6.4607 -1.3860 -2.6699 15 8 7.5654 -1.6296 -2.2235 16 6 6.3226 -0.7922 -4.0126 17 6 7.3384 -0.4609 -4.8577 18 8 6.7794 0.0451 -5.9687 19 6 5.4441 0.0335 -5.8088 20 6 4.4566 0.5119 -6.8001 21 6 3.0915 0.4427 -6.5189 22 6 2.1756 0.8964 -7.4456 23 6 2.6074 1.4077 -8.6564 24 6 3.9592 1.4737 -8.9437 25 6 4.8856 1.0290 -8.0232 26 7 5.1595 -0.4688 -4.6341 27 6 4.2576 -2.9758 1.4380 28 6 3.8335 -4.4173 1.7266 29 6 2.9738 -3.2521 2.2231 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3621 0.0014 32 1 6.0110 -3.2179 -0.6898 33 1 6.0784 -1.5916 0.0306 34 1 4.4814 -1.4694 -2.2957 35 1 8.3949 -0.5834 -4.6698 36 1 2.7530 0.0398 -5.5758 37 1 1.1190 0.8479 -7.2272 38 1 1.8861 1.7570 -9.3805 39 1 4.2898 1.8743 -9.8907 40 1 5.9405 1.0815 -8.2485 41 1 5.1106 -2.5819 1.9906 42 1 3.4513 -5.0060 0.8928 43 1 4.4073 -4.9715 2.4694 44 1 2.9823 -3.0404 3.2923 45 1 2.0255 -3.0738 1.7161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731405645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:59 Heat of formation + Delta-G solvation = 33.223682 kcal Electronic energy + Delta-G solvation = -28609.702815 eV Core-core repulsion = 24594.231157 eV Total energy + Delta-G solvation = -4015.471658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.54371 -40.75119 -39.98686 -39.09861 -36.25106 -36.06022 -35.21742 -33.48383 -33.07837 -31.96107 -30.55458 -29.92267 -26.20479 -25.06891 -24.74442 -23.81385 -23.13636 -23.00279 -22.16438 -21.67151 -21.12987 -19.91978 -19.23730 -18.03687 -18.00498 -17.36924 -17.14783 -17.01497 -16.52065 -16.24545 -16.06901 -15.94692 -15.55691 -15.33615 -14.90553 -14.71978 -14.63210 -14.42317 -14.38936 -14.20288 -13.94769 -13.20077 -13.06065 -12.79333 -12.57873 -12.44941 -12.41784 -12.28833 -12.15585 -12.12247 -11.91192 -11.67686 -11.47642 -11.03578 -10.97565 -10.92374 -10.83393 -10.17781 -9.98605 -9.42000 -9.33507 -7.99035 -5.30688 -0.46193 0.16753 0.38369 1.16962 1.33806 1.35115 1.37129 1.41768 1.99345 2.13954 2.47562 2.65248 2.80934 2.98684 3.35859 3.55793 3.63741 3.64595 3.79161 3.95652 3.98965 4.13576 4.17108 4.29063 4.33237 4.34197 4.42680 4.44109 4.49040 4.58430 4.59982 4.69731 4.76745 4.90626 4.90755 5.05521 5.05763 5.16756 5.32047 5.36633 5.40347 5.44488 5.49749 5.51019 5.82537 5.91266 6.19719 6.23595 6.47906 6.97917 7.09039 7.83543 8.01903 9.22193 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009614 B = 0.003462 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.736002 B = 8086.079923 C =10043.421100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.052 4.052 3 Si 0.937 3.063 4 H -0.287 1.287 5 H -0.300 1.300 6 H -0.262 1.262 7 C -0.206 4.206 8 H 0.067 0.933 9 N -0.743 5.743 10 C 0.199 3.801 11 H 0.056 0.944 12 C 0.123 3.877 13 N -0.703 5.703 14 C 0.600 3.400 15 O -0.564 6.564 16 C -0.100 4.100 17 C 0.041 3.959 18 O -0.184 6.184 19 C 0.237 3.763 20 C -0.046 4.046 21 C -0.090 4.090 22 C -0.128 4.128 23 C -0.092 4.092 24 C -0.118 4.118 25 C -0.088 4.088 26 N -0.476 5.476 27 C -0.168 4.168 28 C -0.160 4.160 29 C -0.177 4.177 30 H 0.255 0.745 31 H 0.361 0.639 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.413 0.587 35 H 0.271 0.729 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.160 0.840 39 H 0.165 0.835 40 H 0.148 0.852 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.466 -0.199 -17.357 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.244 4.244 3 Si 0.766 3.234 4 H -0.214 1.214 5 H -0.227 1.227 6 H -0.187 1.187 7 C -0.337 4.337 8 H 0.085 0.915 9 N -0.385 5.385 10 C 0.091 3.909 11 H 0.074 0.926 12 C -0.001 4.001 13 N -0.352 5.352 14 C 0.386 3.614 15 O -0.444 6.444 16 C -0.221 4.221 17 C -0.034 4.034 18 O -0.069 6.069 19 C 0.031 3.969 20 C -0.047 4.047 21 C -0.110 4.110 22 C -0.146 4.146 23 C -0.110 4.110 24 C -0.135 4.135 25 C -0.108 4.108 26 N -0.205 5.205 27 C -0.190 4.190 28 C -0.198 4.198 29 C -0.214 4.214 30 H 0.064 0.936 31 H 0.194 0.806 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.249 0.751 35 H 0.286 0.714 36 H 0.134 0.866 37 H 0.161 0.839 38 H 0.178 0.822 39 H 0.183 0.817 40 H 0.165 0.835 41 H 0.125 0.875 42 H 0.109 0.891 43 H 0.130 0.870 44 H 0.108 0.892 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.421 -0.551 -16.770 21.487 hybrid contribution 0.094 1.297 0.335 1.343 sum 13.515 0.747 -16.436 21.292 Atomic orbital electron populations 1.69833 1.06693 1.26115 1.60409 1.25192 0.95703 0.99997 1.03468 0.85687 0.78568 0.81581 0.77518 1.21356 1.22721 1.18694 1.18924 0.81972 0.93215 1.39567 0.91525 1.42808 1.02723 1.03267 1.89710 1.20144 0.90154 0.87762 0.92859 0.92596 1.21687 0.97234 0.99188 0.81959 1.45911 1.09600 1.61758 1.17942 1.16879 0.84325 0.77545 0.82678 1.90770 1.25868 1.55715 1.72072 1.21833 0.90018 1.11314 0.98900 1.25993 1.01129 0.94225 0.82006 1.84441 1.21008 1.63015 1.38436 1.24159 0.80277 0.99362 0.93091 1.17465 0.89548 1.05125 0.92605 1.21286 0.91525 0.98006 1.00174 1.21407 1.00385 0.98765 0.94074 1.21803 0.96962 0.95894 0.96336 1.21502 0.92543 0.99171 1.00295 1.21478 1.01789 0.96245 0.91253 1.71002 1.28514 1.15196 1.05803 1.22864 0.99027 0.99115 0.97943 1.23031 1.03128 0.90175 1.03459 1.22731 0.95570 1.03687 0.99422 0.93628 0.80571 0.88986 0.91337 0.75109 0.71392 0.86601 0.83870 0.82249 0.81727 0.83472 0.87468 0.89075 0.86971 0.89205 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.68 13.97 21.65 0.30 -61.37 16 2 C -0.05 -3.00 5.50 84.86 0.47 -2.53 16 3 Si 0.94 46.46 27.74 68.60 1.90 48.36 16 4 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 5 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 6 H -0.26 -12.09 6.52 99.48 0.65 -11.44 16 7 C -0.21 -11.10 9.11 84.03 0.77 -10.34 16 8 H 0.07 3.92 7.14 -2.91 -0.02 3.90 16 9 N -0.74 -33.02 4.34 -322.94 -1.40 -34.42 16 10 C 0.20 7.14 2.70 44.99 0.12 7.26 16 11 H 0.06 2.11 7.84 -2.39 -0.02 2.09 16 12 C 0.12 3.90 5.22 86.38 0.45 4.36 16 13 N -0.70 -24.05 5.38 -466.33 -2.51 -26.56 16 14 C 0.60 20.10 7.82 86.67 0.68 20.78 16 15 O -0.56 -19.96 16.89 -4.07 -0.07 -20.02 16 16 C -0.10 -3.06 6.99 40.50 0.28 -2.78 16 17 C 0.04 0.92 11.94 67.35 0.80 1.72 16 18 O -0.18 -4.25 10.45 -3.95 -0.04 -4.29 16 19 C 0.24 6.61 7.88 87.39 0.69 7.30 16 20 C -0.05 -1.12 5.87 -20.10 -0.12 -1.24 16 21 C -0.09 -2.30 9.68 22.52 0.22 -2.09 16 22 C -0.13 -2.48 10.03 22.23 0.22 -2.25 16 23 C -0.09 -1.25 10.04 22.32 0.22 -1.02 16 24 C -0.12 -1.48 10.03 22.23 0.22 -1.26 16 25 C -0.09 -1.51 9.71 22.52 0.22 -1.29 16 26 N -0.48 -15.65 10.65 -294.25 -3.13 -18.78 16 27 C -0.17 -5.43 5.36 -10.79 -0.06 -5.49 16 28 C -0.16 -4.45 10.18 30.62 0.31 -4.14 16 29 C -0.18 -6.23 9.78 30.62 0.30 -5.93 16 30 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 31 H 0.36 16.28 5.66 -92.70 -0.52 15.75 16 32 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.41 15.42 7.86 -92.71 -0.73 14.69 16 35 H 0.27 3.70 8.06 -2.91 -0.02 3.68 16 36 H 0.12 3.50 7.82 -2.91 -0.02 3.47 16 37 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 39 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 40 H 0.15 1.93 7.89 -2.91 -0.02 1.91 16 41 H 0.11 3.16 8.11 -2.39 -0.02 3.14 16 42 H 0.09 2.49 8.05 -2.39 -0.02 2.48 16 43 H 0.11 2.51 8.14 -2.38 -0.02 2.49 16 44 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 45 H 0.07 3.13 6.23 -2.39 -0.01 3.12 16 Total: -1.00 -72.60 387.70 0.58 -72.03 By element: Atomic # 1 Polarization: 44.29 SS G_CDS: -0.27 Total: 44.01 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 5.80 Total: 1.05 kcal Atomic # 7 Polarization: -134.39 SS G_CDS: -6.74 Total: -141.14 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.11 Total: -24.32 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.90 Total: 48.36 kcal Total: -72.60 0.58 -72.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731405645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.249 kcal (2) G-P(sol) polarization free energy of solvation -72.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds