Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48497 * 109.46725 * 240.00034 * 3 2 1 5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46920 * 120.00247 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47325 * 294.99862 * 11 10 9 13 13 N 1.46500 * 109.47170 * 54.99826 * 11 10 9 14 14 C 1.34779 * 120.00196 * 204.99986 * 13 11 10 15 15 O 1.21582 * 120.00011 * 0.02562 * 14 13 11 16 16 C 1.47532 * 119.99923 * 179.97438 * 14 13 11 17 17 C 1.36620 * 126.82713 * 179.71582 * 16 14 13 18 18 C 1.42193 * 103.79135 * 179.97438 * 17 16 14 19 19 C 1.48449 * 126.84218 * 180.09544 * 18 17 16 20 20 C 1.39320 * 120.11847 * 359.97438 * 19 18 17 21 21 C 1.38029 * 119.87581 * 179.69900 * 20 19 18 22 22 C 1.38318 * 120.11887 * 0.56912 * 21 20 19 23 23 C 1.38319 * 120.24068 * 359.73047 * 22 21 20 24 24 C 1.38024 * 120.11917 * 359.96850 * 23 22 21 25 25 N 1.30935 * 106.31506 * 0.32983 * 18 17 16 26 26 O 1.20871 * 111.80069 * 359.78497 * 25 18 17 27 27 C 1.52994 * 109.47404 * 174.99693 * 11 10 9 28 28 C 1.52999 * 117.50412 * 248.74803 * 27 11 10 29 29 C 1.53002 * 117.50104 * 180.08511 * 27 11 10 30 30 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 33 33 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 34 34 H 0.96998 * 120.00051 * 24.99940 * 13 11 10 35 35 H 1.07994 * 128.10575 * 0.02562 * 17 16 14 36 36 H 1.07995 * 120.05895 * 359.97438 * 20 19 18 37 37 H 1.07995 * 119.93555 * 180.29155 * 21 20 19 38 38 H 1.08000 * 119.87826 * 179.73900 * 22 21 20 39 39 H 1.08005 * 119.93956 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.06032 * 180.02562 * 24 23 22 41 41 H 1.09003 * 115.54830 * 34.41759 * 27 11 10 42 42 H 1.09003 * 117.49323 * 359.97438 * 28 27 11 43 43 H 1.09003 * 117.50071 * 145.01968 * 28 27 11 44 44 H 1.09000 * 117.50257 * 214.97832 * 29 27 11 45 45 H 1.09002 * 117.49965 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.4975 -4.8139 0.9289 13 7 0.1449 -4.6758 -1.1340 14 6 -1.0795 -5.2367 -1.0832 15 8 -1.4215 -5.8618 -0.0981 16 6 -2.0053 -5.0914 -2.2227 17 6 -3.2681 -5.6029 -2.3223 18 6 -3.7083 -5.1721 -3.6039 19 6 -5.0251 -5.4472 -4.2316 20 6 -5.9798 -6.2008 -3.5521 21 6 -7.2048 -6.4483 -4.1379 22 6 -7.4811 -5.9596 -5.4021 23 6 -6.5345 -5.2162 -6.0837 24 6 -5.3086 -4.9575 -5.5047 25 7 -2.7190 -4.4888 -4.1221 26 8 -1.7711 -4.4338 -3.3741 27 6 1.8249 -6.1410 -0.1280 28 6 1.6674 -6.9257 -1.4320 29 6 1.0021 -7.4308 -0.1493 30 1 -0.4851 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 2.6855 -3.7140 -0.8911 33 1 2.6842 -3.7148 0.8888 34 1 0.4176 -4.1769 -1.9198 35 1 -3.8064 -6.1951 -1.5971 36 1 -5.7633 -6.5867 -2.5670 37 1 -7.9473 -7.0283 -3.6101 38 1 -8.4393 -6.1592 -5.8585 39 1 -6.7552 -4.8373 -7.0708 40 1 -4.5704 -4.3765 -6.0377 41 1 2.7971 -6.1723 0.3638 42 1 1.0213 -6.5006 -2.2002 43 1 2.5359 -7.4735 -1.7978 44 1 1.4332 -8.3108 0.3282 45 1 -0.0813 -7.3380 -0.0732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733177279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = 96.993019 kcal Electronic energy + Delta-G solvation = -28654.991360 eV Core-core repulsion = 24642.284948 eV Total energy + Delta-G solvation = -4012.706412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.03308 -40.11464 -39.38282 -37.29399 -34.99361 -34.67121 -33.46372 -32.24479 -31.28818 -31.07734 -30.51064 -28.28066 -24.65694 -24.34587 -23.92537 -22.73883 -22.30430 -22.11840 -21.53192 -20.34242 -19.77136 -18.72495 -17.82828 -17.23692 -16.86407 -16.34154 -16.12440 -15.96166 -15.53613 -15.03835 -14.71691 -14.36704 -14.09661 -13.88963 -13.62882 -13.56539 -13.53320 -13.30321 -13.26639 -12.92273 -12.20700 -11.89733 -11.75752 -11.66406 -11.42654 -11.30872 -11.24910 -11.03793 -10.92246 -10.81562 -10.39593 -10.20991 -10.03083 -9.83795 -9.81267 -9.63412 -9.27479 -8.95123 -8.86536 -8.80382 -6.99133 -5.79255 -3.09808 0.53848 0.85573 1.08129 2.21074 2.58770 3.03866 3.25181 3.43014 3.47414 3.48616 3.57422 3.71366 3.98338 4.24162 4.53939 4.64035 4.69229 4.76821 4.82263 4.87110 4.96762 5.05441 5.11157 5.13111 5.17534 5.31451 5.47590 5.52249 5.53580 5.67400 5.70755 5.71344 5.80163 5.91627 5.95170 6.12351 6.16315 6.17360 6.19208 6.25330 6.36274 6.42358 6.60410 6.60469 6.76113 7.47946 7.66412 7.96179 8.12762 8.37982 9.49902 10.04169 10.39175 11.42812 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009990 B = 0.002902 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.078142 B = 9644.933074 C =11778.116195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.147 3.853 11 C 0.167 3.833 12 H 0.097 0.903 13 N -0.689 5.689 14 C 0.605 3.395 15 O -0.514 6.514 16 C -0.068 4.068 17 C -0.147 4.147 18 C 0.047 3.953 19 C -0.018 4.018 20 C -0.094 4.094 21 C -0.119 4.119 22 C -0.111 4.111 23 C -0.120 4.120 24 C -0.091 4.091 25 N -0.335 5.335 26 O 0.131 5.869 27 C -0.160 4.160 28 C -0.178 4.178 29 C -0.187 4.187 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.029 0.971 33 H 0.038 0.962 34 H 0.413 0.587 35 H 0.184 0.816 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.113 0.887 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.064 -17.070 -9.069 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.019 3.981 11 C 0.063 3.937 12 H 0.115 0.885 13 N -0.339 5.339 14 C 0.388 3.612 15 O -0.391 6.391 16 C -0.134 4.134 17 C -0.169 4.169 18 C -0.109 4.109 19 C -0.019 4.019 20 C -0.113 4.113 21 C -0.137 4.137 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.111 4.111 25 N -0.032 5.032 26 O 0.055 5.945 27 C -0.180 4.180 28 C -0.215 4.215 29 C -0.224 4.224 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.249 0.751 35 H 0.201 0.799 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.131 0.869 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.966 -16.722 -9.511 21.666 hybrid contribution 0.045 0.876 0.250 0.912 sum -9.921 -15.847 -9.261 20.864 Atomic orbital electron populations 1.69650 1.05116 1.25884 1.57163 1.24751 0.95500 0.97740 1.02684 0.86262 0.78514 0.83493 0.77843 1.21227 1.21718 1.21244 1.19141 0.91003 0.83961 1.43437 0.91107 1.42336 1.05956 0.99725 1.89694 1.20932 0.92945 0.84875 0.99309 1.20912 0.90119 0.93376 0.89276 0.88547 1.45929 1.13633 1.52867 1.21499 1.16486 0.80964 0.79926 0.83793 1.90793 1.75763 1.41922 1.30607 1.24241 0.97938 1.00773 0.90433 1.22802 0.93974 1.02905 0.97263 1.21943 0.95479 1.00000 0.93447 1.17679 0.89744 1.00030 0.94480 1.21167 0.92969 0.97293 0.99908 1.21090 0.96626 1.00389 0.95640 1.21295 0.99379 0.97336 0.94958 1.21124 0.93403 0.98986 1.00296 1.21264 0.97319 0.98478 0.94003 1.74006 0.96166 1.17304 1.15749 1.84995 1.33313 1.55298 1.20931 1.22693 1.00961 0.92143 1.02173 1.22915 1.03085 1.03971 0.91563 1.23338 1.01344 0.96881 1.00828 0.93398 0.78042 0.95317 0.94457 0.75059 0.79861 0.85259 0.85357 0.85710 0.85481 0.85229 0.86864 0.89120 0.89247 0.89499 0.86772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.73 -17.64 5.43 -59.91 -0.33 -17.97 16 10 C 0.15 2.73 5.80 -4.04 -0.02 2.71 16 11 C 0.17 2.65 2.59 -67.94 -0.18 2.47 16 12 H 0.10 1.70 7.58 -51.93 -0.39 1.30 16 13 N -0.69 -10.62 3.05 -54.85 -0.17 -10.79 16 14 C 0.61 9.48 6.65 -12.47 -0.08 9.39 16 15 O -0.51 -8.84 13.94 5.29 0.07 -8.76 16 16 C -0.07 -1.00 7.28 -36.38 -0.26 -1.26 16 17 C -0.15 -1.92 10.30 -38.65 -0.40 -2.31 16 18 C 0.05 0.63 7.05 -82.52 -0.58 0.05 16 19 C -0.02 -0.22 5.88 -104.89 -0.62 -0.83 16 20 C -0.09 -0.89 9.60 -39.26 -0.38 -1.27 16 21 C -0.12 -0.94 10.03 -39.63 -0.40 -1.34 16 22 C -0.11 -0.85 10.04 -39.52 -0.40 -1.24 16 23 C -0.12 -1.03 10.03 -39.63 -0.40 -1.43 16 24 C -0.09 -0.99 9.70 -39.26 -0.38 -1.37 16 25 N -0.33 -5.06 11.78 33.39 0.39 -4.67 16 26 O 0.13 1.99 11.02 15.55 0.17 2.17 16 27 C -0.16 -2.11 5.70 -90.62 -0.52 -2.63 16 28 C -0.18 -2.17 9.74 -26.69 -0.26 -2.43 16 29 C -0.19 -2.40 9.82 -26.69 -0.26 -2.66 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.39 9.94 7.33 -40.82 -0.30 9.64 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.41 6.30 8.42 -40.82 -0.34 5.96 16 35 H 0.18 1.94 7.57 -52.49 -0.40 1.55 16 36 H 0.13 1.01 7.22 -52.49 -0.38 0.63 16 37 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.13 1.41 7.89 -52.48 -0.41 1.00 16 41 H 0.11 1.36 8.11 -51.93 -0.42 0.94 16 42 H 0.09 1.14 6.67 -51.93 -0.35 0.80 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.11 1.67 5.01 -51.93 -0.26 1.41 16 LS Contribution 383.57 15.07 5.78 5.78 Total: -1.00 -31.57 383.57 -9.51 -41.09 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -5.76 Total: 14.43 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -5.38 Total: -11.31 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.62 Total: -60.54 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: 0.25 Total: -6.60 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.57 -9.51 -41.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733177279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.081 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds