Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48497 * 109.46725 * 240.00034 * 3 2 1 5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46920 * 120.00247 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47325 * 294.99862 * 11 10 9 13 13 N 1.46500 * 109.47170 * 54.99826 * 11 10 9 14 14 C 1.34779 * 120.00196 * 204.99986 * 13 11 10 15 15 O 1.21582 * 120.00011 * 0.02562 * 14 13 11 16 16 C 1.47532 * 119.99923 * 179.97438 * 14 13 11 17 17 C 1.36620 * 126.82713 * 179.71582 * 16 14 13 18 18 C 1.42193 * 103.79135 * 179.97438 * 17 16 14 19 19 C 1.48449 * 126.84218 * 180.09544 * 18 17 16 20 20 C 1.39320 * 120.11847 * 359.97438 * 19 18 17 21 21 C 1.38029 * 119.87581 * 179.69900 * 20 19 18 22 22 C 1.38318 * 120.11887 * 0.56912 * 21 20 19 23 23 C 1.38319 * 120.24068 * 359.73047 * 22 21 20 24 24 C 1.38024 * 120.11917 * 359.96850 * 23 22 21 25 25 N 1.30935 * 106.31506 * 0.32983 * 18 17 16 26 26 O 1.20871 * 111.80069 * 359.78497 * 25 18 17 27 27 C 1.52994 * 109.47404 * 174.99693 * 11 10 9 28 28 C 1.52999 * 117.50412 * 248.74803 * 27 11 10 29 29 C 1.53002 * 117.50104 * 180.08511 * 27 11 10 30 30 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 33 33 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 34 34 H 0.96998 * 120.00051 * 24.99940 * 13 11 10 35 35 H 1.07994 * 128.10575 * 0.02562 * 17 16 14 36 36 H 1.07995 * 120.05895 * 359.97438 * 20 19 18 37 37 H 1.07995 * 119.93555 * 180.29155 * 21 20 19 38 38 H 1.08000 * 119.87826 * 179.73900 * 22 21 20 39 39 H 1.08005 * 119.93956 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.06032 * 180.02562 * 24 23 22 41 41 H 1.09003 * 115.54830 * 34.41759 * 27 11 10 42 42 H 1.09003 * 117.49323 * 359.97438 * 28 27 11 43 43 H 1.09003 * 117.50071 * 145.01968 * 28 27 11 44 44 H 1.09000 * 117.50257 * 214.97832 * 29 27 11 45 45 H 1.09002 * 117.49965 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.4975 -4.8139 0.9289 13 7 0.1449 -4.6758 -1.1340 14 6 -1.0795 -5.2367 -1.0832 15 8 -1.4215 -5.8618 -0.0981 16 6 -2.0053 -5.0914 -2.2227 17 6 -3.2681 -5.6029 -2.3223 18 6 -3.7083 -5.1721 -3.6039 19 6 -5.0251 -5.4472 -4.2316 20 6 -5.9798 -6.2008 -3.5521 21 6 -7.2048 -6.4483 -4.1379 22 6 -7.4811 -5.9596 -5.4021 23 6 -6.5345 -5.2162 -6.0837 24 6 -5.3086 -4.9575 -5.5047 25 7 -2.7190 -4.4888 -4.1221 26 8 -1.7711 -4.4338 -3.3741 27 6 1.8249 -6.1410 -0.1280 28 6 1.6674 -6.9257 -1.4320 29 6 1.0021 -7.4308 -0.1493 30 1 -0.4851 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 2.6855 -3.7140 -0.8911 33 1 2.6842 -3.7148 0.8888 34 1 0.4176 -4.1769 -1.9198 35 1 -3.8064 -6.1951 -1.5971 36 1 -5.7633 -6.5867 -2.5670 37 1 -7.9473 -7.0283 -3.6101 38 1 -8.4393 -6.1592 -5.8585 39 1 -6.7552 -4.8373 -7.0708 40 1 -4.5704 -4.3765 -6.0377 41 1 2.7971 -6.1723 0.3638 42 1 1.0213 -6.5006 -2.2002 43 1 2.5359 -7.4735 -1.7978 44 1 1.4332 -8.3108 0.3282 45 1 -0.0813 -7.3380 -0.0732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733177279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = 79.193176 kcal Electronic energy + Delta-G solvation = -28655.763219 eV Core-core repulsion = 24642.284948 eV Total energy + Delta-G solvation = -4013.478271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.13120 -41.36800 -40.08314 -38.52201 -36.55606 -35.69787 -34.92511 -33.51562 -32.81600 -31.90879 -31.36767 -29.87108 -26.19249 -25.43110 -25.19647 -23.70198 -23.44425 -22.96444 -22.91951 -21.38776 -20.96168 -19.88340 -19.14706 -18.93027 -17.61880 -17.44263 -17.33324 -17.24211 -16.66756 -16.32500 -15.84041 -15.54768 -15.22842 -15.16865 -15.07201 -14.83657 -14.46687 -14.43415 -14.30045 -14.06006 -13.69567 -13.13628 -12.96940 -12.82630 -12.73588 -12.68166 -12.34391 -12.32153 -12.13514 -11.98094 -11.97685 -11.84220 -11.58713 -11.15565 -10.96333 -10.95214 -10.81136 -10.14591 -9.95332 -9.60760 -9.00719 -7.93596 -5.23071 -0.44615 -0.12249 0.40558 1.27742 1.42537 1.48550 1.51123 1.57014 1.82257 2.06928 2.56337 2.76356 2.85879 2.94589 3.20181 3.41293 3.60068 3.73756 3.84680 3.96242 4.02441 4.04130 4.06149 4.08271 4.19206 4.28395 4.40129 4.47823 4.49415 4.58727 4.60410 4.67565 4.82989 4.87326 4.92773 5.06440 5.07118 5.11462 5.25995 5.37327 5.41300 5.45540 5.46325 5.52122 5.52205 5.96116 6.21535 6.26647 6.80176 6.91763 7.34403 8.07740 8.30614 9.29137 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009990 B = 0.002902 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.078142 B = 9644.933074 C =11778.116195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.744 5.744 10 C 0.149 3.851 11 C 0.177 3.823 12 H 0.076 0.924 13 N -0.688 5.688 14 C 0.608 3.392 15 O -0.531 6.531 16 C -0.083 4.083 17 C -0.138 4.138 18 C 0.053 3.947 19 C -0.050 4.050 20 C -0.099 4.099 21 C -0.119 4.119 22 C -0.104 4.104 23 C -0.124 4.124 24 C -0.110 4.110 25 N -0.358 5.358 26 O 0.114 5.886 27 C -0.164 4.164 28 C -0.168 4.168 29 C -0.186 4.186 30 H 0.249 0.751 31 H 0.374 0.626 32 H 0.041 0.959 33 H 0.046 0.954 34 H 0.413 0.587 35 H 0.207 0.793 36 H 0.143 0.857 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.148 0.852 40 H 0.117 0.883 41 H 0.132 0.868 42 H 0.082 0.918 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.495 -18.654 -9.546 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.203 1.203 5 H -0.227 1.227 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.387 5.387 10 C 0.022 3.978 11 C 0.073 3.927 12 H 0.094 0.906 13 N -0.338 5.338 14 C 0.392 3.608 15 O -0.410 6.410 16 C -0.149 4.149 17 C -0.160 4.160 18 C -0.103 4.103 19 C -0.051 4.051 20 C -0.118 4.118 21 C -0.137 4.137 22 C -0.122 4.122 23 C -0.142 4.142 24 C -0.129 4.129 25 N -0.059 5.059 26 O 0.041 5.959 27 C -0.183 4.183 28 C -0.206 4.206 29 C -0.223 4.223 30 H 0.058 0.942 31 H 0.206 0.794 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.249 0.751 35 H 0.224 0.776 36 H 0.161 0.839 37 H 0.176 0.824 38 H 0.174 0.826 39 H 0.166 0.834 40 H 0.135 0.865 41 H 0.149 0.851 42 H 0.100 0.900 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.329 -18.337 -9.982 23.293 hybrid contribution 0.084 1.263 0.353 1.314 sum -10.245 -17.074 -9.629 22.118 Atomic orbital electron populations 1.69820 1.06664 1.25973 1.59487 1.25548 0.96278 1.01104 1.03776 0.85231 0.77134 0.79275 0.78219 1.20292 1.22681 1.20374 1.19587 0.91633 0.85033 1.41092 0.90119 1.42524 1.05643 1.01000 1.89583 1.21078 0.93331 0.83525 0.99869 1.20705 0.89510 0.93939 0.88562 0.90640 1.45898 1.13733 1.52827 1.21307 1.16527 0.80928 0.79520 0.83817 1.90778 1.76092 1.42754 1.31339 1.24180 0.98510 1.01813 0.90402 1.23142 0.93287 1.02144 0.97382 1.22369 0.95884 0.98651 0.93390 1.17866 0.89560 1.02279 0.95411 1.21426 0.93168 0.96709 1.00482 1.21494 0.96392 0.99932 0.95845 1.21730 1.00170 0.95646 0.94691 1.21413 0.92624 0.98902 1.01257 1.21338 0.98335 0.99144 0.94114 1.73984 0.96839 1.18715 1.16318 1.84967 1.33731 1.56021 1.21186 1.22622 1.01399 0.90689 1.03600 1.22976 1.03451 1.03222 0.90915 1.23307 1.00272 0.97188 1.01483 0.94241 0.79434 0.94095 0.93640 0.75073 0.77575 0.83920 0.82410 0.82569 0.83428 0.86499 0.85064 0.89962 0.87092 0.87520 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.46 13.06 21.65 0.28 -59.17 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.97 45.95 29.55 68.60 2.03 47.97 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.24 -13.09 9.99 84.03 0.84 -12.25 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.74 -36.24 5.43 -343.45 -1.87 -38.11 16 10 C 0.15 5.44 5.80 86.38 0.50 5.94 16 11 C 0.18 5.60 2.59 44.99 0.12 5.72 16 12 H 0.08 2.72 7.58 -2.39 -0.02 2.70 16 13 N -0.69 -21.77 3.05 -445.72 -1.36 -23.13 16 14 C 0.61 19.66 6.65 86.69 0.58 20.23 16 15 O -0.53 -18.68 13.94 -3.97 -0.06 -18.74 16 16 C -0.08 -2.54 7.28 24.34 0.18 -2.37 16 17 C -0.14 -3.64 10.30 22.87 0.24 -3.40 16 18 C 0.05 1.46 7.05 42.98 0.30 1.76 16 19 C -0.05 -1.17 5.88 -20.04 -0.12 -1.29 16 20 C -0.10 -1.72 9.60 22.48 0.22 -1.51 16 21 C -0.12 -1.53 10.03 22.24 0.22 -1.31 16 22 C -0.10 -1.27 10.04 22.31 0.22 -1.05 16 23 C -0.12 -1.94 10.03 22.24 0.22 -1.71 16 24 C -0.11 -2.39 9.70 22.48 0.22 -2.18 16 25 N -0.36 -11.40 11.78 -48.92 -0.58 -11.97 16 26 O 0.11 3.68 11.02 65.84 0.73 4.40 16 27 C -0.16 -4.09 5.70 -10.80 -0.06 -4.15 16 28 C -0.17 -3.83 9.74 30.62 0.30 -3.53 16 29 C -0.19 -4.50 9.82 30.62 0.30 -4.20 16 30 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.37 19.84 7.33 -92.71 -0.68 19.16 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.41 13.08 8.42 -92.71 -0.78 12.30 16 35 H 0.21 4.24 7.57 -2.91 -0.02 4.22 16 36 H 0.14 1.98 7.22 -2.91 -0.02 1.96 16 37 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 38 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 39 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.12 2.72 7.89 -2.91 -0.02 2.70 16 41 H 0.13 2.82 8.11 -2.39 -0.02 2.81 16 42 H 0.08 2.02 6.67 -2.39 -0.02 2.01 16 43 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.09 2.74 5.01 -2.39 -0.01 2.73 16 Total: -1.00 -69.22 383.57 3.50 -65.71 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: -0.41 Total: 42.11 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 4.74 Total: -9.07 kcal Atomic # 7 Polarization: -128.87 SS G_CDS: -3.52 Total: -132.39 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.67 Total: -14.34 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -69.22 3.50 -65.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733177279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.906 kcal (2) G-P(sol) polarization free energy of solvation -69.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds