Wall clock time and date at job start Sat Apr 11 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86808 * 119.99770 * 2 1 4 4 H 1.48503 * 109.46960 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46905 * 299.99860 * 3 2 1 6 6 H 1.48490 * 109.47336 * 59.99707 * 3 2 1 7 7 C 1.38809 * 120.00459 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00529 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99593 * 0.02562 * 7 2 1 10 10 C 1.47066 * 136.05541 * 180.02562 * 9 7 2 11 11 C 1.53504 * 88.04678 * 207.05070 * 10 9 7 12 12 O 1.42902 * 114.20451 * 87.54970 * 11 10 9 13 13 C 1.52998 * 114.20339 * 220.37609 * 11 10 9 14 14 N 1.46500 * 109.46753 * 180.02562 * 13 11 10 15 15 C 1.34779 * 120.00155 * 180.02562 * 14 13 11 16 16 O 1.21285 * 119.99911 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00141 * 179.97438 * 15 14 13 18 18 C 1.50699 * 109.46829 * 179.97438 * 17 15 14 19 19 C 1.39377 * 119.49593 * 269.73237 * 18 17 15 20 20 C 1.36168 * 121.08483 * 179.71336 * 19 18 17 21 21 C 1.40372 * 119.51706 * 0.55479 * 20 19 18 22 22 C 1.40439 * 122.07896 * 179.72845 * 21 20 19 23 23 N 1.31241 * 119.87975 * 180.02562 * 22 21 20 24 24 C 1.32610 * 122.77686 * 0.02562 * 23 22 21 25 25 C 1.36175 * 121.87790 * 359.96501 * 24 23 22 26 26 C 1.40690 * 118.66466 * 0.03126 * 25 24 23 27 27 C 1.36223 * 119.48529 * 90.00470 * 18 17 15 28 28 C 1.47064 * 136.05798 * 359.94252 * 9 7 2 29 29 H 0.97000 * 120.00117 * 0.02562 * 1 2 3 30 30 H 1.09002 * 113.46793 * 321.86042 * 10 9 7 31 31 H 1.08999 * 113.46805 * 92.24409 * 10 9 7 32 32 H 0.96697 * 113.99512 * 180.02562 * 12 11 10 33 33 H 1.09008 * 109.46899 * 299.99625 * 13 11 10 34 34 H 1.08993 * 109.47356 * 59.99935 * 13 11 10 35 35 H 0.97001 * 120.00099 * 359.97438 * 14 13 11 36 36 H 1.08995 * 109.46884 * 299.99644 * 17 15 14 37 37 H 1.09000 * 109.46808 * 60.00119 * 17 15 14 38 38 H 1.08000 * 119.45344 * 359.97438 * 19 18 17 39 39 H 1.08005 * 120.24283 * 180.29947 * 20 19 18 40 40 H 1.07991 * 120.05997 * 0.04753 * 22 21 20 41 41 H 1.08002 * 119.05971 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.66681 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.26447 * 0.02562 * 27 18 17 44 44 H 1.08999 * 113.47096 * 267.69901 * 28 9 7 45 45 H 1.09005 * 113.46966 * 38.08294 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 1.6801 -3.8153 0.0015 11 6 0.3420 -4.0941 -0.6972 12 8 0.3951 -4.0039 -2.1223 13 6 -0.3797 -5.3457 -0.1936 14 7 -1.6370 -5.5126 -0.9269 15 6 -2.4454 -6.5548 -0.6499 16 8 -2.1319 -7.3548 0.2061 17 6 -3.7390 -6.7262 -1.4038 18 6 -4.4498 -7.9591 -0.9080 19 6 -4.2030 -9.1865 -1.5203 20 6 -4.8228 -10.3218 -1.0948 21 6 -5.7344 -10.2543 -0.0294 22 6 -6.4079 -11.3899 0.4490 23 7 -7.2519 -11.2772 1.4477 24 6 -7.5092 -10.1205 2.0431 25 6 -6.9082 -8.9621 1.6541 26 6 -5.9900 -9.0028 0.5890 27 6 -5.3279 -7.8556 0.1283 28 6 -0.0876 -2.7948 0.0011 29 1 -0.4850 0.8400 -0.0004 30 1 2.5484 -4.0474 -0.6153 31 1 1.7459 -4.2456 1.0008 32 1 -0.4494 -4.1797 -2.5592 33 1 0.2527 -6.2190 -0.3540 34 1 -0.5905 -5.2402 0.8705 35 1 -1.8879 -4.8727 -1.6113 36 1 -4.3712 -5.8528 -1.2438 37 1 -3.5280 -6.8322 -2.4679 38 1 -3.5054 -9.2387 -2.3432 39 1 -4.6178 -11.2667 -1.5762 40 1 -6.2314 -12.3543 -0.0038 41 1 -8.2154 -10.0966 2.8599 42 1 -7.1326 -8.0307 2.1527 43 1 -5.5136 -6.8975 0.5908 44 1 -0.4932 -2.9538 1.0003 45 1 -0.7228 -2.1584 -0.6151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733503584.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:24 Heat of formation + Delta-G solvation = 34.426910 kcal Electronic energy + Delta-G solvation = -28017.221954 eV Core-core repulsion = 24001.802472 eV Total energy + Delta-G solvation = -4015.419482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.14480 -40.00731 -38.87454 -37.62938 -35.07313 -34.02377 -33.40158 -32.87905 -32.07185 -30.11409 -29.26915 -27.91836 -25.90947 -24.82729 -24.23762 -23.24487 -22.53612 -21.93512 -20.61817 -19.44836 -18.15989 -17.82525 -17.33317 -16.90550 -16.75331 -16.16884 -15.62601 -15.37934 -15.24087 -14.83508 -14.54535 -14.44799 -14.26872 -13.97346 -13.89860 -13.72659 -13.48816 -13.32159 -12.95002 -12.80677 -12.31516 -12.24713 -12.21782 -12.04734 -11.81526 -11.33948 -11.12873 -10.95584 -10.76306 -10.48867 -10.46684 -10.11845 -9.85956 -9.77535 -9.56479 -9.23403 -9.17456 -8.94519 -8.88267 -8.34210 -6.95055 -5.82226 -3.14017 0.08664 0.60438 1.65557 2.55244 2.66941 3.18327 3.36419 3.41623 3.44214 3.81806 4.10585 4.19671 4.26132 4.39298 4.43480 4.51682 4.56434 4.69540 4.70499 4.86333 4.96146 5.00622 5.07625 5.16144 5.17762 5.26837 5.31834 5.41677 5.50941 5.55550 5.70106 5.75837 5.77729 5.96537 6.05300 6.19774 6.23898 6.33966 6.35229 6.47505 6.48383 6.53912 6.93346 7.09758 7.37655 7.44403 7.68688 7.90440 8.04247 8.15939 8.98181 9.64836 10.55242 11.35717 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.025212 B = 0.001864 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.322067 B =15021.720593 C =15539.407215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.212 4.212 8 H 0.083 0.917 9 N -0.600 5.600 10 C 0.134 3.866 11 C 0.056 3.944 12 O -0.521 6.521 13 C 0.108 3.892 14 N -0.725 5.725 15 C 0.515 3.485 16 O -0.533 6.533 17 C -0.110 4.110 18 C -0.038 4.038 19 C -0.101 4.101 20 C -0.088 4.088 21 C -0.113 4.113 22 C 0.144 3.856 23 N -0.493 5.493 24 C 0.071 3.929 25 C -0.152 4.152 26 C -0.021 4.021 27 C -0.099 4.099 28 C 0.137 3.863 29 H 0.253 0.747 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.359 0.641 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.398 0.602 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.162 0.838 41 H 0.152 0.848 42 H 0.138 0.862 43 H 0.131 0.869 44 H 0.033 0.967 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.705 -19.837 -3.939 25.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.339 4.339 8 H 0.101 0.899 9 N -0.325 5.325 10 C 0.007 3.993 11 C 0.013 3.987 12 O -0.324 6.324 13 C -0.016 4.016 14 N -0.378 5.378 15 C 0.300 3.700 16 O -0.409 6.409 17 C -0.150 4.150 18 C -0.040 4.040 19 C -0.119 4.119 20 C -0.108 4.108 21 C -0.115 4.115 22 C -0.027 4.027 23 N -0.200 5.200 24 C -0.072 4.072 25 C -0.172 4.172 26 C -0.026 4.026 27 C -0.117 4.117 28 C 0.010 3.990 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.205 0.795 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.233 0.767 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.145 0.855 39 H 0.152 0.848 40 H 0.179 0.821 41 H 0.169 0.831 42 H 0.156 0.844 43 H 0.149 0.851 44 H 0.050 0.950 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.267 -20.524 -2.759 25.148 hybrid contribution 0.205 1.991 -0.549 2.075 sum -14.062 -18.534 -3.308 23.499 Atomic orbital electron populations 1.69819 1.05054 1.25248 1.56813 1.24793 0.95751 0.97585 1.02432 0.85992 0.78762 0.83448 0.77244 1.20372 1.21661 1.21728 1.18965 0.90189 0.81149 1.43640 0.89892 1.45270 1.02311 0.99139 1.85774 1.22380 0.93733 0.87011 0.96189 1.23465 0.99857 0.93407 0.81944 1.86656 1.35182 1.93586 1.17003 1.21932 0.83965 0.98668 0.97060 1.45954 1.22321 1.28143 1.41382 1.20392 0.85048 0.80988 0.83547 1.90746 1.74425 1.42991 1.32766 1.20799 0.94833 0.97810 1.01539 1.19131 0.95230 0.94203 0.95438 1.20790 0.99154 0.91873 1.00097 1.20918 0.95493 0.98915 0.95464 1.19036 0.99712 0.94371 0.98357 1.23191 0.90449 0.97451 0.91613 1.67412 1.15731 1.28144 1.08759 1.22156 0.98581 0.87675 0.98754 1.21936 0.97455 1.00412 0.97354 1.18128 0.95971 0.93244 0.95258 1.20811 0.96753 0.97818 0.96307 1.22769 0.89672 0.89839 0.96672 0.93725 0.93047 0.93286 0.79452 0.91059 0.90217 0.76657 0.87359 0.87417 0.85511 0.84823 0.82080 0.83093 0.84438 0.85085 0.94967 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.03 11.51 55.49 0.64 -26.39 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.92 22.10 29.55 -169.99 -5.02 17.07 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 7 C -0.21 -5.98 10.75 -15.06 -0.16 -6.14 16 8 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 9 N -0.60 -15.35 3.78 -184.53 -0.70 -16.05 16 10 C 0.13 2.73 8.11 -8.50 -0.07 2.66 16 11 C 0.06 0.99 1.74 -90.03 -0.16 0.83 16 12 O -0.52 -9.09 13.56 -35.23 -0.48 -9.57 16 13 C 0.11 1.55 5.43 -4.04 -0.02 1.53 16 14 N -0.72 -8.22 5.34 -60.29 -0.32 -8.54 16 15 C 0.51 6.04 7.82 -10.98 -0.09 5.95 16 16 O -0.53 -8.53 16.03 5.55 0.09 -8.44 16 17 C -0.11 -0.85 5.80 -29.03 -0.17 -1.02 16 18 C -0.04 -0.36 4.34 -104.92 -0.46 -0.82 16 19 C -0.10 -0.88 9.58 -39.90 -0.38 -1.26 16 20 C -0.09 -0.73 9.81 -39.52 -0.39 -1.12 16 21 C -0.11 -1.10 5.74 -106.86 -0.61 -1.72 16 22 C 0.14 1.32 11.05 -16.98 -0.19 1.13 16 23 N -0.49 -5.21 10.30 -13.15 -0.14 -5.35 16 24 C 0.07 0.66 11.07 -17.96 -0.20 0.46 16 25 C -0.15 -1.39 9.88 -39.40 -0.39 -1.78 16 26 C -0.02 -0.22 5.75 -106.81 -0.61 -0.83 16 27 C -0.10 -0.98 9.42 -39.56 -0.37 -1.35 16 28 C 0.14 3.06 6.83 -8.43 -0.06 3.00 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.92 8.10 -51.93 -0.42 0.50 16 32 H 0.36 4.44 7.21 45.56 0.33 4.77 16 33 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 34 H 0.08 1.22 7.89 -51.93 -0.41 0.81 16 35 H 0.40 3.56 6.95 -40.82 -0.28 3.28 16 36 H 0.11 0.64 8.07 -51.93 -0.42 0.22 16 37 H 0.11 0.56 8.08 -51.93 -0.42 0.14 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 40 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 42 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 44 H 0.03 0.73 7.93 -51.93 -0.41 0.32 16 45 H 0.08 1.89 7.12 -51.93 -0.37 1.53 16 LS Contribution 382.11 15.07 5.76 5.76 Total: -1.00 -37.26 382.11 -9.92 -47.18 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.33 Total: 5.15 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -4.42 Total: -0.82 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -0.52 Total: -56.33 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.39 Total: -18.01 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.26 -9.92 -47.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733503584.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.608 kcal (2) G-P(sol) polarization free energy of solvation -37.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds