Wall clock time and date at job start Sat Apr 11 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00068 * 2 1 4 4 H 1.48496 * 109.47438 * 274.20817 * 3 2 1 5 5 H 1.48501 * 109.47110 * 34.21384 * 3 2 1 6 6 H 1.48506 * 109.46964 * 154.20693 * 3 2 1 7 7 C 1.38812 * 119.99611 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99879 * 161.03053 * 7 2 1 9 9 N 1.36929 * 120.00300 * 341.30654 * 7 2 1 10 10 C 1.47241 * 121.33584 * 333.23213 * 9 7 2 11 11 C 1.53274 * 107.62525 * 115.72530 * 10 9 7 12 12 C 1.50606 * 110.81595 * 47.65581 * 11 10 9 13 13 C 1.38985 * 117.60566 * 160.27755 * 12 11 10 14 14 C 1.37908 * 120.58200 * 179.39166 * 13 12 11 15 15 C 1.38264 * 119.82464 * 0.02562 * 14 13 12 16 16 C 1.37967 * 119.71890 * 0.19141 * 15 14 13 17 17 C 1.37675 * 122.86980 * 340.03562 * 12 11 10 18 18 C 1.46687 * 121.34198 * 153.52569 * 9 7 2 19 19 H 1.08992 * 109.43396 * 344.29154 * 18 9 7 20 20 C 1.53002 * 109.43938 * 104.16879 * 18 9 7 21 21 N 1.46503 * 109.46896 * 304.99832 * 20 18 9 22 22 C 1.34770 * 119.99549 * 179.97438 * 21 20 18 23 23 O 1.21276 * 120.00436 * 0.02562 * 22 21 20 24 24 C 1.50707 * 119.99827 * 180.02562 * 22 21 20 25 25 C 1.50691 * 109.47282 * 180.02562 * 24 22 21 26 26 C 1.41379 * 126.80287 * 124.71065 * 25 24 22 27 27 C 1.35457 * 103.98779 * 179.88919 * 26 25 24 28 28 O 1.34042 * 106.44388 * 0.36880 * 27 26 25 29 29 N 1.20926 * 111.56416 * 359.74818 * 28 27 26 30 30 H 0.96995 * 119.99875 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.78216 * 235.30255 * 10 9 7 32 32 H 1.08997 * 109.77891 * 356.11886 * 10 9 7 33 33 H 1.08999 * 109.31646 * 287.25699 * 11 10 9 34 34 H 1.08999 * 109.08803 * 167.90908 * 11 10 9 35 35 H 1.07996 * 119.70621 * 359.41269 * 13 12 11 36 36 H 1.08001 * 120.08790 * 180.02562 * 14 13 12 37 37 H 1.07996 * 120.14211 * 180.21486 * 15 14 13 38 38 H 1.07999 * 119.74187 * 179.97438 * 16 15 14 39 39 H 1.08997 * 109.47175 * 64.99604 * 20 18 9 40 40 H 1.08993 * 109.47054 * 185.00125 * 20 18 9 41 41 H 0.97001 * 120.00000 * 0.02562 * 21 20 18 42 42 H 1.09001 * 109.47090 * 300.00456 * 24 22 21 43 43 H 1.09000 * 109.47175 * 59.99966 * 24 22 21 44 44 H 1.08005 * 128.00579 * 0.02562 * 26 25 24 45 45 H 1.07995 * 126.77588 * 180.13800 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4088 2.0978 -1.3962 5 1 1.4950 2.6253 0.7872 6 1 3.5894 1.4160 0.6092 7 6 2.0102 -1.2022 -0.0005 8 1 3.0462 -1.2275 -0.3046 9 7 1.3797 -2.3569 0.3790 10 6 0.2375 -2.3360 1.3080 11 6 -0.9907 -2.8445 0.5451 12 6 -0.6684 -4.1097 -0.2056 13 6 -1.7312 -4.9170 -0.5934 14 6 -1.5071 -6.0832 -1.2947 15 6 -0.2147 -6.4551 -1.6156 16 6 0.8426 -5.6579 -1.2280 17 6 0.6185 -4.4851 -0.5196 18 6 1.8189 -3.6650 -0.1186 19 1 2.4676 -3.5250 -0.9832 20 6 2.5900 -4.3959 0.9824 21 7 3.6898 -3.5499 1.4523 22 6 4.5095 -3.9903 2.4273 23 8 4.3369 -5.0870 2.9153 24 6 5.6406 -3.1197 2.9111 25 6 6.4001 -3.8396 3.9954 26 6 7.7869 -4.1137 4.0191 27 6 7.9712 -4.7685 5.1905 28 8 6.7656 -4.8571 5.7695 29 7 5.9084 -4.3373 5.0932 30 1 -0.4850 0.8400 0.0004 31 1 0.4416 -2.9868 2.1582 32 1 0.0634 -1.3177 1.6555 33 1 -1.3174 -2.0818 -0.1617 34 1 -1.7939 -3.0435 1.2546 35 1 -2.7415 -4.6283 -0.3437 36 1 -2.3390 -6.7043 -1.5924 37 1 -0.0335 -7.3654 -2.1676 38 1 1.8523 -5.9483 -1.4781 39 1 1.9186 -4.6136 1.8130 40 1 2.9924 -5.3283 0.5865 41 1 3.8276 -2.6725 1.0623 42 1 6.3122 -2.9019 2.0808 43 1 5.2378 -2.1874 3.3068 44 1 8.5281 -3.8580 3.2763 45 1 8.9047 -5.1479 5.5791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733908366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:36 Heat of formation + Delta-G solvation = 75.627941 kcal Electronic energy + Delta-G solvation = -29560.503045 eV Core-core repulsion = 25546.870175 eV Total energy + Delta-G solvation = -4013.632871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.90162 -39.66240 -38.96977 -36.32775 -34.62634 -34.06127 -32.35113 -32.04443 -31.70673 -29.91220 -29.63910 -28.45150 -26.72029 -24.21367 -23.13838 -22.67126 -22.16687 -21.64801 -21.10296 -19.88224 -18.67610 -17.77526 -17.61944 -16.99124 -16.35708 -15.93279 -15.61003 -15.43088 -15.02902 -14.71617 -14.52248 -14.20583 -13.94277 -13.52468 -13.38714 -13.24167 -13.01485 -12.75645 -12.51813 -12.45478 -12.33052 -11.99175 -11.70946 -11.27017 -11.21051 -11.13613 -11.08104 -10.85738 -10.72007 -10.47699 -10.18272 -10.13423 -9.89560 -9.63850 -9.58984 -9.43250 -8.63842 -8.51294 -8.25493 -7.92038 -6.86783 -5.96259 -3.39700 1.54380 1.86910 1.94260 2.23246 3.00025 3.26579 3.27455 3.33700 3.35742 3.65740 4.15035 4.29171 4.32481 4.55960 5.06853 5.14670 5.20111 5.20270 5.23248 5.32952 5.37495 5.41682 5.45442 5.53819 5.57614 5.68453 5.81242 5.89639 5.96834 5.97817 6.09475 6.23542 6.36709 6.44267 6.54798 6.58696 6.70954 6.75764 6.93257 6.96691 7.02490 7.32823 7.35782 7.50773 7.59877 7.65436 8.02497 8.24039 8.35094 8.65354 9.00734 9.63277 10.22751 11.11137 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009015 B = 0.003800 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3105.038595 B = 7367.122918 C = 9753.444050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.012 3.988 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.261 4.261 8 H 0.068 0.932 9 N -0.580 5.580 10 C 0.165 3.835 11 C -0.096 4.096 12 C -0.039 4.039 13 C -0.134 4.134 14 C -0.128 4.128 15 C -0.139 4.139 16 C -0.119 4.119 17 C -0.080 4.080 18 C 0.194 3.806 19 H 0.077 0.923 20 C 0.116 3.884 21 N -0.705 5.705 22 C 0.510 3.490 23 O -0.544 6.544 24 C -0.066 4.066 25 C 0.029 3.971 26 C -0.229 4.229 27 C -0.070 4.070 28 O 0.103 5.897 29 N -0.335 5.335 30 H 0.255 0.745 31 H 0.007 0.993 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.048 0.952 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.411 0.589 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.170 0.830 45 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.824 -7.381 2.824 12.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.189 4.189 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.390 4.390 8 H 0.086 0.914 9 N -0.300 5.300 10 C 0.040 3.960 11 C -0.134 4.134 12 C -0.040 4.040 13 C -0.152 4.152 14 C -0.146 4.146 15 C -0.158 4.158 16 C -0.137 4.137 17 C -0.082 4.082 18 C 0.085 3.915 19 H 0.095 0.905 20 C -0.011 4.011 21 N -0.357 5.357 22 C 0.294 3.706 23 O -0.422 6.422 24 C -0.106 4.106 25 C -0.131 4.131 26 C -0.250 4.250 27 C -0.151 4.151 28 O 0.033 5.967 29 N -0.036 5.036 30 H 0.066 0.934 31 H 0.025 0.975 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.066 0.934 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.248 0.752 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.188 0.812 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 8.330 -8.006 3.676 12.124 hybrid contribution 1.066 1.346 -1.002 1.988 sum 9.396 -6.660 2.674 11.823 Atomic orbital electron populations 1.69975 1.05304 1.25677 1.52264 1.24995 0.95221 0.98387 1.00249 0.86317 0.79239 0.83708 0.77626 1.21473 1.21543 1.20348 1.19013 0.93041 0.84556 1.42398 0.91432 1.44120 1.36288 0.99965 1.49663 1.20891 0.85152 1.00707 0.89273 1.21072 0.99421 0.93702 0.99246 1.19876 0.91917 0.95908 0.96265 1.21199 0.98579 0.95343 1.00114 1.20914 0.96586 0.97215 0.99893 1.20879 0.93017 0.99868 1.01991 1.21093 0.98628 0.94794 0.99219 1.20081 0.95290 0.94883 0.97912 1.19604 0.91505 0.86427 0.93953 0.90537 1.21878 0.88040 0.92737 0.98417 1.45870 1.30053 1.21556 1.38203 1.20180 0.83211 0.87244 0.79920 1.90704 1.72926 1.21657 1.56903 1.20016 0.96181 0.98673 0.95740 1.22932 0.92274 1.02150 0.95700 1.22690 0.96200 1.05757 1.00396 1.25957 0.91493 1.02620 0.95078 1.84886 1.13420 1.57317 1.41084 1.73918 1.13167 1.10463 1.06019 0.93447 0.97468 0.88739 0.88085 0.93392 0.86892 0.87051 0.86963 0.86802 0.92205 0.92544 0.75196 0.86842 0.86798 0.81202 0.76980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.08 10.15 55.49 0.56 -22.52 16 2 C 0.01 0.29 4.93 -17.43 -0.09 0.20 16 3 Si 0.90 19.64 29.59 -169.99 -5.03 14.61 16 4 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.26 -6.18 8.71 -15.06 -0.13 -6.31 16 8 H 0.07 1.51 7.31 -52.48 -0.38 1.13 16 9 N -0.58 -12.80 2.30 -166.02 -0.38 -13.19 16 10 C 0.17 3.68 5.49 -3.50 -0.02 3.67 16 11 C -0.10 -2.00 5.78 -27.79 -0.16 -2.16 16 12 C -0.04 -0.77 5.76 -104.60 -0.60 -1.38 16 13 C -0.13 -2.31 9.59 -39.43 -0.38 -2.69 16 14 C -0.13 -1.97 10.04 -39.69 -0.40 -2.37 16 15 C -0.14 -2.12 10.05 -39.67 -0.40 -2.52 16 16 C -0.12 -1.97 9.34 -39.46 -0.37 -2.34 16 17 C -0.08 -1.52 5.17 -104.55 -0.54 -2.06 16 18 C 0.19 3.76 2.50 -68.93 -0.17 3.58 16 19 H 0.08 1.48 7.98 -51.93 -0.41 1.06 16 20 C 0.12 2.12 5.00 -4.04 -0.02 2.10 16 21 N -0.70 -12.08 5.39 -60.29 -0.32 -12.40 16 22 C 0.51 8.81 7.82 -10.98 -0.09 8.72 16 23 O -0.54 -11.47 15.59 5.56 0.09 -11.38 16 24 C -0.07 -0.87 6.30 -29.04 -0.18 -1.05 16 25 C 0.03 0.41 6.10 -82.11 -0.50 -0.09 16 26 C -0.23 -2.35 11.12 -39.38 -0.44 -2.79 16 27 C -0.07 -0.64 12.30 29.74 0.37 -0.27 16 28 O 0.10 1.36 11.20 17.17 0.19 1.56 16 29 N -0.33 -5.46 11.46 33.42 0.38 -5.08 16 30 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 31 H 0.01 0.16 7.46 -51.93 -0.39 -0.23 16 32 H 0.09 2.33 5.95 -51.93 -0.31 2.02 16 33 H 0.10 2.38 7.13 -51.93 -0.37 2.01 16 34 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 35 H 0.11 1.74 8.05 -52.49 -0.42 1.32 16 36 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.11 1.66 8.05 -52.49 -0.42 1.24 16 39 H 0.06 1.23 7.53 -51.93 -0.39 0.84 16 40 H 0.06 0.99 8.03 -51.93 -0.42 0.57 16 41 H 0.41 6.85 6.68 -40.82 -0.27 6.58 16 42 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.17 1.19 8.06 -52.48 -0.42 0.77 16 45 H 0.21 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -31.15 372.12 -8.91 -40.06 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -5.88 Total: 10.49 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -4.12 Total: -7.76 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.24 Total: -53.18 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.28 Total: -9.82 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.15 -8.91 -40.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733908366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.685 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds