Wall clock time and date at job start Sat Apr 11 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99694 * 2 1 4 4 H 1.48500 * 109.47304 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47447 * 300.00310 * 3 2 1 6 6 H 1.48498 * 109.46775 * 60.00420 * 3 2 1 7 7 C 1.38813 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99999 * 191.87968 * 7 2 1 9 9 N 1.36938 * 119.99615 * 11.87733 * 7 2 1 10 10 C 1.47232 * 121.32782 * 37.43309 * 9 7 2 11 11 C 1.52788 * 107.90579 * 115.83183 * 10 9 7 12 12 C 1.50599 * 110.85863 * 47.51432 * 11 10 9 13 13 C 1.38980 * 117.63066 * 160.29030 * 12 11 10 14 14 C 1.37900 * 120.58435 * 178.88067 * 13 12 11 15 15 C 1.38265 * 119.82826 * 0.07859 * 14 13 12 16 16 C 1.37966 * 119.71361 * 0.26017 * 15 14 13 17 17 C 1.37675 * 122.85053 * 339.69648 * 12 11 10 18 18 C 1.46681 * 121.32489 * 217.44721 * 9 7 2 19 19 H 1.08998 * 109.39759 * 104.32730 * 18 9 7 20 20 C 1.52992 * 109.43763 * 344.43429 * 18 9 7 21 21 N 1.46503 * 109.47426 * 60.81201 * 20 18 9 22 22 C 1.34773 * 120.00232 * 184.06666 * 21 20 18 23 23 O 1.21275 * 120.00325 * 0.02562 * 22 21 20 24 24 C 1.50701 * 119.99741 * 180.02562 * 22 21 20 25 25 C 1.50698 * 109.46846 * 179.97438 * 24 22 21 26 26 C 1.41384 * 126.80039 * 125.00284 * 25 24 22 27 27 C 1.35456 * 103.98425 * 180.02562 * 26 25 24 28 28 O 1.34036 * 106.44623 * 359.97438 * 27 26 25 29 29 N 1.20926 * 111.57227 * 359.71404 * 28 27 26 30 30 H 0.96995 * 119.99794 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.76611 * 235.43312 * 10 9 7 32 32 H 1.08999 * 109.77403 * 356.16948 * 10 9 7 33 33 H 1.09003 * 109.19761 * 167.88424 * 11 10 9 34 34 H 1.09000 * 109.20443 * 287.22023 * 11 10 9 35 35 H 1.07999 * 119.70739 * 359.15221 * 13 12 11 36 36 H 1.07999 * 120.09349 * 180.02562 * 14 13 12 37 37 H 1.07997 * 120.14614 * 180.28754 * 15 14 13 38 38 H 1.07996 * 119.74437 * 179.84167 * 16 15 14 39 39 H 1.08998 * 109.47043 * 180.81364 * 20 18 9 40 40 H 1.09005 * 109.47166 * 300.81097 * 20 18 9 41 41 H 0.97003 * 119.99251 * 4.06660 * 21 20 18 42 42 H 1.08991 * 109.47341 * 300.00247 * 24 22 21 43 43 H 1.09006 * 109.47280 * 60.00205 * 24 22 21 44 44 H 1.07997 * 128.00323 * 359.96270 * 26 25 24 45 45 H 1.07995 * 126.77137 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0104 -1.2021 -0.0005 8 1 3.0730 -1.2121 0.1920 9 7 1.3477 -2.3752 -0.2452 10 6 0.2579 -2.4473 -1.2325 11 6 0.7033 -3.3813 -2.3565 12 6 1.2808 -4.6552 -1.7981 13 6 1.3430 -5.7585 -2.6409 14 6 1.8814 -6.9489 -2.1997 15 6 2.3628 -7.0490 -0.9075 16 6 2.2960 -5.9574 -0.0664 17 6 1.7518 -4.7592 -0.5086 18 6 1.6951 -3.6100 0.4663 19 1 0.9402 -3.8152 1.2252 20 6 3.0599 -3.4440 1.1375 21 7 2.9989 -2.3436 2.1027 22 6 4.1122 -1.9595 2.7580 23 8 5.1646 -2.5244 2.5484 24 6 4.0492 -0.8279 3.7513 25 6 5.4175 -0.5995 4.3399 26 6 6.1395 0.6160 4.3581 27 6 7.2953 0.3007 4.9903 28 8 7.2155 -1.0009 5.3002 29 7 6.1665 -1.4808 4.9375 30 1 -0.4849 0.8400 0.0004 31 1 -0.6420 -2.8415 -0.7602 32 1 0.0582 -1.4540 -1.6345 33 1 -0.1548 -3.6215 -2.9843 34 1 1.4600 -2.8803 -2.9603 35 1 0.9703 -5.6816 -3.6516 36 1 1.9261 -7.8012 -2.8615 37 1 2.7898 -7.9774 -0.5581 38 1 2.6696 -6.0358 0.9439 39 1 3.3252 -4.3663 1.6543 40 1 3.8124 -3.2223 0.3807 41 1 2.1571 -1.8915 2.2701 42 1 3.7136 0.0789 3.2482 43 1 3.3494 -1.0818 4.5475 44 1 5.8394 1.5737 3.9594 45 1 8.1185 0.9667 5.2026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733908367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:38 Heat of formation + Delta-G solvation = 80.127574 kcal Electronic energy + Delta-G solvation = -29863.079728 eV Core-core repulsion = 25849.641976 eV Total energy + Delta-G solvation = -4013.437752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.78821 -39.72823 -38.89956 -36.37228 -34.53325 -34.04052 -32.50828 -32.08734 -31.60197 -29.93335 -29.56800 -28.51550 -26.36194 -24.73025 -23.02154 -22.58986 -22.17393 -21.64870 -20.73091 -19.75267 -19.02691 -17.68430 -17.51215 -16.85152 -16.12345 -16.02076 -15.70461 -15.45503 -14.94746 -14.65343 -14.39223 -14.33425 -13.90222 -13.48995 -13.46582 -13.28906 -12.85727 -12.83747 -12.62400 -12.38698 -12.25857 -11.98572 -11.73027 -11.44269 -11.23366 -11.11262 -10.96982 -10.92915 -10.76985 -10.53845 -10.23111 -10.05201 -9.89906 -9.66069 -9.51295 -9.28009 -8.73363 -8.37459 -8.21852 -8.06501 -6.71145 -5.97140 -3.51257 1.64635 1.76695 1.81062 2.34912 3.18487 3.20885 3.31601 3.34515 3.37858 3.80561 4.17323 4.27605 4.29948 4.70682 5.14706 5.18324 5.20261 5.23742 5.30998 5.31616 5.37445 5.40541 5.44582 5.54670 5.64185 5.69283 5.80943 5.85015 5.97362 6.03191 6.11917 6.19115 6.20394 6.27126 6.39373 6.47071 6.64663 6.72890 6.85497 6.86518 7.09727 7.12930 7.27933 7.38527 7.52694 7.69366 8.21659 8.32054 8.44599 8.84814 9.01267 9.60471 10.25938 11.09119 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010687 B = 0.003992 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.300581 B = 7012.016708 C = 9209.467344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.014 3.986 3 Si 0.889 3.111 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.253 4.253 8 H 0.071 0.929 9 N -0.583 5.583 10 C 0.166 3.834 11 C -0.108 4.108 12 C -0.049 4.049 13 C -0.131 4.131 14 C -0.129 4.129 15 C -0.134 4.134 16 C -0.120 4.120 17 C -0.077 4.077 18 C 0.195 3.805 19 H 0.045 0.955 20 C 0.140 3.860 21 N -0.693 5.693 22 C 0.511 3.489 23 O -0.550 6.550 24 C -0.066 4.066 25 C 0.033 3.967 26 C -0.227 4.227 27 C -0.071 4.071 28 O 0.100 5.900 29 N -0.338 5.338 30 H 0.256 0.744 31 H 0.023 0.977 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.415 0.585 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.170 0.830 45 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.796 -2.779 4.181 6.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.186 4.186 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.383 4.383 8 H 0.088 0.912 9 N -0.306 5.306 10 C 0.040 3.960 11 C -0.147 4.147 12 C -0.049 4.049 13 C -0.149 4.149 14 C -0.148 4.148 15 C -0.152 4.152 16 C -0.138 4.138 17 C -0.079 4.079 18 C 0.088 3.912 19 H 0.062 0.938 20 C 0.016 3.984 21 N -0.345 5.345 22 C 0.296 3.704 23 O -0.429 6.429 24 C -0.106 4.106 25 C -0.127 4.127 26 C -0.249 4.249 27 C -0.152 4.152 28 O 0.031 5.969 29 N -0.040 5.040 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.253 0.747 42 H 0.134 0.866 43 H 0.128 0.872 44 H 0.188 0.812 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 5.256 -4.320 4.325 8.062 hybrid contribution -0.114 2.035 -0.522 2.104 sum 5.142 -2.285 3.803 6.792 Atomic orbital electron populations 1.69971 1.05257 1.25680 1.52689 1.25244 0.95204 0.98257 0.99919 0.86419 0.79813 0.84177 0.77734 1.19948 1.21345 1.21292 1.19202 0.91403 0.83228 1.44466 0.91185 1.43947 1.40336 1.04098 1.42248 1.20819 0.89154 0.98481 0.87538 1.21184 0.99422 0.93858 1.00203 1.19699 0.97019 0.95340 0.92850 1.21196 1.01185 0.93235 0.99330 1.20927 1.00194 0.97510 0.96128 1.20935 1.01497 0.98336 0.94407 1.21154 1.00070 0.92818 0.99794 1.20177 0.97556 0.95291 0.94858 1.19551 0.93918 0.86447 0.91255 0.93764 1.21276 0.97664 0.88370 0.91068 1.45969 1.11877 1.35886 1.40788 1.20067 0.84254 0.84247 0.81879 1.90686 1.29745 1.56366 1.66098 1.20018 0.91525 1.00469 0.98635 1.22952 0.98636 0.90027 1.01045 1.22738 0.95341 1.00527 1.06284 1.25921 1.01107 0.86259 1.01948 1.84856 1.30543 1.21924 1.59578 1.73874 0.94013 1.21743 1.14350 0.93431 0.95845 0.88874 0.92310 0.91218 0.86836 0.86920 0.86761 0.86397 0.92519 0.91462 0.74694 0.86574 0.87240 0.81206 0.77000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.96 11.42 55.49 0.63 -22.32 16 2 C 0.01 0.35 5.04 -17.43 -0.09 0.26 16 3 Si 0.89 19.57 29.57 -169.99 -5.03 14.55 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.25 -6.04 6.91 -15.06 -0.10 -6.14 16 8 H 0.07 1.74 6.00 -52.49 -0.31 1.43 16 9 N -0.58 -12.99 2.90 -166.33 -0.48 -13.47 16 10 C 0.17 3.60 5.57 -3.75 -0.02 3.58 16 11 C -0.11 -2.00 5.87 -28.04 -0.16 -2.16 16 12 C -0.05 -0.88 5.76 -104.60 -0.60 -1.48 16 13 C -0.13 -2.05 9.59 -39.43 -0.38 -2.43 16 14 C -0.13 -1.84 10.04 -39.69 -0.40 -2.24 16 15 C -0.13 -1.93 10.05 -39.67 -0.40 -2.33 16 16 C -0.12 -1.93 9.05 -39.46 -0.36 -2.29 16 17 C -0.08 -1.40 5.44 -104.56 -0.57 -1.97 16 18 C 0.20 3.82 3.04 -68.94 -0.21 3.61 16 19 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 20 C 0.14 2.69 4.13 -4.04 -0.02 2.67 16 21 N -0.69 -12.93 3.58 -60.30 -0.22 -13.14 16 22 C 0.51 9.68 7.82 -10.99 -0.09 9.60 16 23 O -0.55 -12.35 15.60 5.56 0.09 -12.27 16 24 C -0.07 -1.01 6.30 -29.04 -0.18 -1.19 16 25 C 0.03 0.52 6.10 -82.10 -0.50 0.02 16 26 C -0.23 -2.84 11.12 -39.38 -0.44 -3.28 16 27 C -0.07 -0.76 12.30 29.74 0.37 -0.39 16 28 O 0.10 1.42 11.20 17.19 0.19 1.62 16 29 N -0.34 -5.79 11.48 33.42 0.38 -5.40 16 30 H 0.26 6.43 8.31 -40.82 -0.34 6.10 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 2.25 6.17 -51.93 -0.32 1.93 16 33 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.11 1.53 8.05 -52.49 -0.42 1.11 16 36 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 38 H 0.12 1.73 6.68 -52.49 -0.35 1.38 16 39 H 0.06 1.01 6.60 -51.93 -0.34 0.67 16 40 H 0.07 1.46 7.78 -51.93 -0.40 1.05 16 41 H 0.42 7.75 7.31 -40.82 -0.30 7.45 16 42 H 0.12 1.63 8.14 -51.93 -0.42 1.20 16 43 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 44 H 0.17 1.70 8.06 -52.49 -0.42 1.27 16 45 H 0.21 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -30.70 369.12 -8.83 -39.52 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -5.81 Total: 11.52 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -4.15 Total: -6.16 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.32 Total: -54.34 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.28 Total: -10.65 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.70 -8.83 -39.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733908367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.652 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds