Wall clock time and date at job start Sat Apr 11 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00095 * 2 1 4 4 H 1.48506 * 109.47100 * 239.99868 * 3 2 1 5 5 H 1.48492 * 109.47316 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47185 * 120.00285 * 3 2 1 7 7 C 1.38816 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99737 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00014 * 185.54031 * 9 7 2 11 11 C 1.52995 * 112.90586 * 290.79966 * 10 9 7 12 12 N 1.46503 * 109.47478 * 309.71047 * 11 10 9 13 13 C 1.34777 * 120.00112 * 175.14812 * 12 11 10 14 14 O 1.21655 * 119.99934 * 359.97438 * 13 12 11 15 15 C 1.47129 * 119.99743 * 180.02562 * 13 12 11 16 16 N 1.35880 * 126.61810 * 355.23322 * 15 13 12 17 17 C 1.29944 * 108.73958 * 180.02562 * 16 15 13 18 18 O 1.34045 * 109.77648 * 0.02562 * 17 16 15 19 19 C 1.34758 * 108.24283 * 359.72855 * 18 17 16 20 20 C 1.47576 * 126.76503 * 180.30037 * 19 18 17 21 21 C 1.39691 * 120.15647 * 127.10050 * 20 19 18 22 22 C 1.37936 * 119.83865 * 179.69607 * 21 20 19 23 23 C 1.38374 * 120.15184 * 0.57943 * 22 21 20 24 24 C 1.38369 * 120.32123 * 359.71413 * 23 22 21 25 25 C 1.37931 * 120.15525 * 359.97438 * 24 23 22 26 26 C 1.53782 * 113.61364 * 62.05018 * 10 9 7 27 27 C 1.53791 * 87.07961 * 89.11998 * 26 10 9 28 28 C 1.53780 * 87.08137 * 25.42934 * 27 26 10 29 29 H 0.97003 * 119.99760 * 359.97438 * 1 2 3 30 30 H 0.97007 * 120.00052 * 5.53888 * 9 7 2 31 31 H 1.08999 * 109.47377 * 69.71330 * 11 10 9 32 32 H 1.09005 * 109.47112 * 189.71064 * 11 10 9 33 33 H 0.96999 * 119.99636 * 355.14788 * 12 11 10 34 34 H 1.07995 * 125.10489 * 179.97438 * 17 16 15 35 35 H 1.08000 * 120.07992 * 0.02562 * 21 20 19 36 36 H 1.07999 * 119.91919 * 180.31702 * 22 21 20 37 37 H 1.08006 * 119.83595 * 179.73886 * 23 22 21 38 38 H 1.08000 * 119.92423 * 179.97438 * 24 23 22 39 39 H 1.07995 * 120.07823 * 180.02562 * 25 24 23 40 40 H 1.08989 * 113.61603 * 334.57073 * 26 10 9 41 41 H 1.08998 * 113.61213 * 203.66016 * 26 10 9 42 42 H 1.08993 * 113.61659 * 139.98399 * 27 26 10 43 43 H 1.09004 * 113.60695 * 270.88594 * 27 26 10 44 44 H 1.08997 * 113.61162 * 89.11583 * 28 27 26 45 45 H 1.09004 * 113.61633 * 219.93526 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0529 -3.6539 0.1214 11 6 2.8906 -3.9809 -1.1164 12 7 2.0597 -3.8532 -2.3162 13 6 2.6119 -3.9990 -3.5370 14 8 3.8004 -4.2362 -3.6426 15 6 1.7775 -3.8701 -4.7419 16 7 0.4303 -3.6973 -4.7801 17 6 0.0535 -3.6268 -6.0217 18 8 1.1185 -3.7489 -6.8265 19 6 2.2144 -3.8971 -6.0564 20 6 3.6056 -4.0586 -6.5216 21 6 4.6105 -3.2197 -6.0339 22 6 5.9097 -3.3806 -6.4684 23 6 6.2164 -4.3622 -7.3942 24 6 5.2251 -5.1927 -7.8862 25 6 3.9227 -5.0475 -7.4558 26 6 2.8258 -3.7954 1.4433 27 6 1.5468 -4.4121 2.0340 28 6 1.1770 -4.8241 0.5993 29 1 -0.4850 0.8401 0.0004 30 1 0.3588 -2.3900 -0.0813 31 1 3.7300 -3.2886 -1.1803 32 1 3.2663 -5.0015 -1.0416 33 1 1.1121 -3.6637 -2.2319 34 1 -0.9647 -3.4911 -6.3550 35 1 4.3716 -2.4506 -5.3143 36 1 6.6885 -2.7361 -6.0884 37 1 7.2347 -4.4809 -7.7341 38 1 5.4716 -5.9565 -8.6089 39 1 3.1500 -5.6967 -7.8403 40 1 3.0987 -2.8412 1.8938 41 1 3.6615 -4.4930 1.3880 42 1 1.7350 -5.2571 2.6962 43 1 0.8672 -3.6775 2.4661 44 1 1.5621 -5.8028 0.3132 45 1 0.1187 -4.7017 0.3688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754981850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:04 Heat of formation + Delta-G solvation = 51.551966 kcal Electronic energy + Delta-G solvation = -29440.131644 eV Core-core repulsion = 25425.454761 eV Total energy + Delta-G solvation = -4014.676883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.29656 -39.41616 -39.02997 -38.25323 -34.83032 -33.85267 -33.18972 -32.49402 -31.04045 -30.00829 -29.05297 -27.33241 -25.23195 -24.37992 -23.60803 -23.39629 -22.51078 -21.75107 -21.07104 -20.07319 -18.54424 -17.93625 -17.17844 -17.06392 -16.75942 -16.13726 -15.70759 -15.45494 -14.98120 -14.85586 -14.52000 -14.34061 -14.17932 -13.91237 -13.62917 -13.51868 -13.26430 -13.16111 -12.76849 -12.65190 -12.14439 -11.69711 -11.58471 -11.29620 -11.24316 -11.16007 -11.00316 -10.80484 -10.77361 -10.34148 -10.20708 -10.16507 -9.83749 -9.65393 -9.46855 -9.42087 -9.00008 -8.87140 -8.53129 -8.33146 -7.02700 -5.79849 -3.09692 0.62430 1.33909 1.48413 2.15259 2.50673 3.42582 3.47435 3.47743 3.51194 3.64999 3.70855 4.11511 4.50728 4.55552 4.80046 4.83389 5.00449 5.01930 5.23416 5.26185 5.29644 5.35077 5.37205 5.45742 5.52827 5.53954 5.60613 5.78813 5.79734 5.93674 6.02220 6.13409 6.17947 6.23897 6.29742 6.37807 6.38954 6.41798 6.42700 6.50406 6.77112 6.81844 6.89797 7.02546 7.11124 7.44754 7.71630 8.08824 8.38297 8.63821 9.49629 10.03372 10.38766 11.41995 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010512 B = 0.003409 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.969553 B = 8211.033326 C = 8615.750318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.007 4.007 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.698 5.698 10 C 0.172 3.828 11 C 0.120 3.880 12 N -0.679 5.679 13 C 0.591 3.409 14 O -0.542 6.542 15 C -0.042 4.042 16 N -0.452 5.452 17 C 0.174 3.826 18 O -0.195 6.195 19 C 0.064 3.936 20 C -0.022 4.022 21 C -0.045 4.045 22 C -0.121 4.121 23 C -0.103 4.103 24 C -0.129 4.129 25 C -0.090 4.090 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.144 4.144 29 H 0.255 0.745 30 H 0.387 0.613 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.411 0.589 34 H 0.256 0.744 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.775 -11.661 -13.588 18.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.339 5.339 10 C 0.079 3.921 11 C -0.006 4.006 12 N -0.328 5.328 13 C 0.375 3.625 14 O -0.421 6.421 15 C -0.163 4.163 16 N -0.180 5.180 17 C -0.054 4.054 18 O -0.081 6.081 19 C 0.008 3.992 20 C -0.022 4.022 21 C -0.063 4.063 22 C -0.139 4.139 23 C -0.121 4.121 24 C -0.147 4.147 25 C -0.109 4.109 26 C -0.188 4.188 27 C -0.165 4.165 28 C -0.182 4.182 29 H 0.065 0.935 30 H 0.222 0.778 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.248 0.752 34 H 0.271 0.729 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.271 -11.608 -13.092 18.274 hybrid contribution -0.221 1.138 -0.504 1.264 sum 5.051 -10.470 -13.596 17.888 Atomic orbital electron populations 1.69644 1.05014 1.25769 1.57284 1.24704 0.95432 0.97519 1.02697 0.86333 0.78607 0.83764 0.77874 1.21363 1.21743 1.21221 1.19032 0.90947 0.83615 1.42932 0.91294 1.42042 1.05958 0.98939 1.86964 1.20827 0.92640 0.87796 0.90819 1.21912 0.94477 0.99611 0.84634 1.45560 1.13965 1.68826 1.04461 1.16622 0.85976 0.77964 0.81920 1.90809 1.14303 1.50534 1.86436 1.22187 0.90141 1.10066 0.93935 1.70735 1.10610 1.15544 1.21161 1.28048 0.93136 1.00846 0.83338 1.84452 1.15795 1.68458 1.39384 1.21768 0.86892 1.02172 0.88376 1.17432 0.86296 0.98722 0.99763 1.21141 0.91951 0.97070 0.96134 1.21056 0.96056 0.98965 0.97781 1.21295 0.99310 0.94996 0.96540 1.20978 0.92573 1.00155 1.01036 1.21180 0.97117 0.96899 0.95674 1.23251 0.96154 1.01046 0.98331 1.22625 0.98652 0.99693 0.95550 1.23182 1.00154 0.97680 0.97222 0.93479 0.77825 0.91533 0.92599 0.75225 0.72870 0.85442 0.85348 0.85805 0.85646 0.85849 0.90549 0.91380 0.92813 0.89954 0.90554 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.13 13.07 55.49 0.73 -26.40 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.90 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.23 -6.20 9.19 -15.06 -0.14 -6.34 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.70 -16.28 4.64 -46.48 -0.22 -16.50 16 10 C 0.17 3.25 0.88 -131.01 -0.12 3.13 16 11 C 0.12 2.24 5.08 -4.04 -0.02 2.22 16 12 N -0.68 -12.92 5.39 -61.47 -0.33 -13.25 16 13 C 0.59 11.30 7.77 -12.65 -0.10 11.20 16 14 O -0.54 -10.98 14.04 5.23 0.07 -10.91 16 15 C -0.04 -0.72 7.05 -82.35 -0.58 -1.30 16 16 N -0.45 -7.18 11.04 -11.04 -0.12 -7.30 16 17 C 0.17 2.04 13.16 51.96 0.68 2.72 16 18 O -0.19 -2.53 10.74 5.14 0.06 -2.47 16 19 C 0.06 0.98 6.83 -35.66 -0.24 0.74 16 20 C -0.02 -0.31 5.21 -105.00 -0.55 -0.86 16 21 C -0.04 -0.65 7.82 -39.15 -0.31 -0.95 16 22 C -0.12 -1.44 10.03 -39.64 -0.40 -1.84 16 23 C -0.10 -1.05 10.04 -39.48 -0.40 -1.45 16 24 C -0.13 -1.31 10.03 -39.65 -0.40 -1.70 16 25 C -0.09 -1.07 9.79 -39.15 -0.38 -1.46 16 26 C -0.15 -2.59 7.26 -25.91 -0.19 -2.77 16 27 C -0.13 -2.07 7.99 -25.91 -0.21 -2.27 16 28 C -0.14 -2.33 7.37 -25.92 -0.19 -2.52 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.06 0.96 7.98 -51.93 -0.41 0.54 16 33 H 0.41 8.03 7.91 -40.82 -0.32 7.70 16 34 H 0.26 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.13 2.01 7.77 -52.49 -0.41 1.60 16 36 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.08 1.51 7.72 -51.94 -0.40 1.10 16 41 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.08 1.09 7.98 -51.93 -0.41 0.68 16 45 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -32.10 385.12 -8.71 -40.81 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -6.05 Total: 16.69 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -3.62 Total: -3.73 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: 0.06 Total: -63.44 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.13 Total: -13.38 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.10 -8.71 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754981850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.364 kcal (2) G-P(sol) polarization free energy of solvation -32.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds