Wall clock time and date at job start Sat Apr 11 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99752 * 2 1 4 4 H 1.48499 * 109.46913 * 234.55940 * 3 2 1 5 5 H 1.48496 * 109.47319 * 354.56106 * 3 2 1 6 6 H 1.48502 * 109.47081 * 114.56229 * 3 2 1 7 7 C 1.38811 * 120.00029 * 179.72055 * 2 1 3 8 8 H 1.08003 * 120.00270 * 2.75380 * 7 2 1 9 9 N 1.36939 * 119.99806 * 182.76316 * 7 2 1 10 10 C 1.47064 * 136.06078 * 354.02301 * 9 7 2 11 11 C 1.53753 * 87.88948 * 152.96807 * 10 9 7 12 12 C 1.53003 * 114.08686 * 139.78164 * 11 10 9 13 13 C 1.52997 * 109.46914 * 207.30391 * 12 11 10 14 14 O 1.42906 * 109.46629 * 185.08897 * 13 12 11 15 15 N 1.46505 * 114.57510 * 272.66695 * 11 10 9 16 16 C 1.34775 * 119.99869 * 279.13386 * 15 11 10 17 17 O 1.21544 * 120.00276 * 5.01210 * 16 15 11 18 18 C 1.47906 * 119.99879 * 185.00538 * 16 15 11 19 19 C 1.38888 * 121.11010 * 6.30059 * 18 16 15 20 20 C 1.39279 * 119.57762 * 179.69017 * 19 18 16 21 21 N 1.30987 * 121.88044 * 0.64668 * 20 19 18 22 22 C 1.33535 * 121.83081 * 359.65416 * 21 20 19 23 23 C 1.40714 * 120.97129 * 180.02562 * 22 21 20 24 24 C 1.36060 * 119.74354 * 179.97438 * 23 22 21 25 25 C 1.39353 * 121.05272 * 359.97438 * 24 23 22 26 26 C 1.36243 * 120.84147 * 359.97438 * 25 24 23 27 27 C 1.40107 * 119.64302 * 0.02562 * 26 25 24 28 28 C 1.47073 * 136.05693 * 174.40382 * 9 7 2 29 29 H 0.97002 * 119.99318 * 185.01920 * 1 2 3 30 30 H 1.08994 * 113.47404 * 267.70540 * 10 9 7 31 31 H 1.09011 * 113.46192 * 38.14056 * 10 9 7 32 32 H 1.09001 * 109.47098 * 327.30700 * 12 11 10 33 33 H 1.09002 * 109.47037 * 87.30461 * 12 11 10 34 34 H 1.08995 * 109.47355 * 305.07994 * 13 12 11 35 35 H 1.08992 * 109.47289 * 65.08967 * 13 12 11 36 36 H 0.96705 * 113.99730 * 180.02562 * 14 13 12 37 37 H 0.97000 * 119.99558 * 99.13999 * 15 11 10 38 38 H 1.08003 * 120.21017 * 0.02562 * 19 18 16 39 39 H 1.07997 * 119.05422 * 180.27419 * 20 19 18 40 40 H 1.08000 * 120.12957 * 359.95685 * 23 22 21 41 41 H 1.07999 * 119.47042 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.57910 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.18380 * 179.97438 * 26 25 24 44 44 H 1.09000 * 113.46374 * 321.86456 * 28 9 7 45 45 H 1.08994 * 113.46476 * 92.24001 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.2007 1.6405 -1.1407 5 1 1.2906 2.7433 -0.1327 6 1 3.0017 1.7555 1.2734 7 6 2.0103 -1.2021 0.0059 8 1 1.4713 -2.1371 -0.0345 9 7 3.3785 -1.2025 0.0630 10 6 4.4404 -0.1860 0.0206 11 6 5.3156 -1.1480 0.8407 12 6 6.7806 -1.1880 0.4012 13 6 7.3790 -2.5535 0.7448 14 8 8.7759 -2.5508 0.4432 15 7 5.1493 -1.0358 2.2920 16 6 5.7844 -0.0590 2.9695 17 8 6.4213 0.7831 2.3675 18 6 5.7062 -0.0118 4.4458 19 6 5.0957 -1.0310 5.1650 20 6 5.0457 -0.9571 6.5550 21 7 5.5495 0.0578 7.2123 22 6 6.1456 1.0759 6.5869 23 6 6.6812 2.1570 7.3112 24 6 7.2838 3.1811 6.6485 25 6 7.3815 3.1791 5.2584 26 6 6.8755 2.1490 4.5241 27 6 6.2482 1.0776 5.1736 28 6 4.4329 -2.2202 0.1871 29 1 -0.4849 -0.8369 0.0735 30 1 4.8231 0.0005 -0.9828 31 1 4.1850 0.7309 0.5520 32 1 6.8416 -1.0248 -0.6748 33 1 7.3368 -0.4067 0.9192 34 1 7.2370 -2.7557 1.8064 35 1 6.8821 -3.3260 0.1580 36 1 9.2215 -3.3871 0.6362 37 1 4.5823 -1.6646 2.7652 38 1 4.6672 -1.8782 4.6501 39 1 4.5729 -1.7565 7.1061 40 1 6.6138 2.1739 8.3890 41 1 7.6937 4.0084 7.2088 42 1 7.8652 4.0042 4.7567 43 1 6.9568 2.1585 3.4472 44 1 4.1711 -3.0366 0.8603 45 1 4.8128 -2.5708 -0.7724 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755333528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:11 Heat of formation + Delta-G solvation = 49.410413 kcal Electronic energy + Delta-G solvation = -30091.870352 eV Core-core repulsion = 26077.100604 eV Total energy + Delta-G solvation = -4014.769748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.26694 -40.17166 -38.19049 -37.21401 -36.76770 -33.96551 -33.50884 -32.30560 -31.06465 -30.65987 -29.93946 -27.31405 -25.76916 -25.31989 -23.71320 -23.48318 -22.79725 -21.43977 -20.60799 -19.31185 -18.29502 -17.71556 -17.64734 -17.43130 -17.23835 -16.09310 -15.69424 -15.30422 -15.02219 -14.92979 -14.83425 -14.47603 -14.20138 -14.02167 -13.98400 -13.82164 -13.48407 -13.26622 -13.21002 -12.90361 -12.05215 -11.92391 -11.90578 -11.72524 -11.63797 -11.47590 -11.21325 -10.96559 -10.61761 -10.54853 -10.40373 -10.18881 -9.91749 -9.50733 -9.26302 -9.21382 -8.98794 -8.94061 -8.74711 -8.35721 -7.26801 -6.38802 -3.34020 -0.01897 0.65438 1.62837 2.68228 2.98849 3.12664 3.41364 3.41897 3.61940 4.01668 4.07828 4.09316 4.41556 4.49841 4.52834 4.58981 4.61572 4.71581 4.76529 4.95967 5.07533 5.13438 5.19716 5.30310 5.32195 5.39064 5.43643 5.54101 5.59532 5.64467 5.79477 5.84072 5.90102 6.00083 6.05645 6.06074 6.18686 6.26456 6.30787 6.39125 6.45556 6.47288 6.73298 6.86229 6.94451 7.54896 7.57539 7.69068 8.13724 8.21517 8.87708 9.39772 10.22917 11.12558 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009469 B = 0.004397 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.231325 B = 6366.310777 C = 7623.825271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.017 4.017 3 Si 1.069 2.931 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.292 1.292 7 C -0.307 4.307 8 H 0.084 0.916 9 N -0.624 5.624 10 C 0.093 3.907 11 C 0.133 3.867 12 C -0.120 4.120 13 C 0.081 3.919 14 O -0.574 6.574 15 N -0.680 5.680 16 C 0.562 3.438 17 O -0.521 6.521 18 C -0.064 4.064 19 C -0.139 4.139 20 C 0.127 3.873 21 N -0.461 5.461 22 C 0.123 3.877 23 C -0.101 4.101 24 C -0.097 4.097 25 C -0.121 4.121 26 C -0.097 4.097 27 C -0.065 4.065 28 C 0.125 3.875 29 H 0.261 0.739 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.047 0.953 36 H 0.375 0.625 37 H 0.405 0.595 38 H 0.143 0.857 39 H 0.166 0.834 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.171 0.829 44 H 0.050 0.950 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.776 -2.970 11.832 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.217 4.217 3 Si 0.902 3.098 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.433 4.433 8 H 0.101 0.899 9 N -0.352 5.352 10 C -0.033 4.033 11 C 0.045 3.955 12 C -0.159 4.159 13 C 0.003 3.997 14 O -0.379 6.379 15 N -0.330 5.330 16 C 0.349 3.651 17 O -0.399 6.399 18 C -0.075 4.075 19 C -0.160 4.160 20 C -0.045 4.045 21 N -0.170 5.170 22 C 0.002 3.998 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.139 4.139 26 C -0.115 4.115 27 C -0.068 4.068 28 C -0.002 4.002 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.221 0.779 37 H 0.241 0.759 38 H 0.161 0.839 39 H 0.183 0.817 40 H 0.153 0.847 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.187 0.813 44 H 0.069 0.931 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.577 -0.020 12.024 20.478 hybrid contribution -0.183 -2.737 -0.499 2.788 sum 16.394 -2.758 11.525 20.229 Atomic orbital electron populations 1.70936 1.05314 1.29300 1.51751 1.25626 0.96384 1.00814 0.98846 0.83720 0.73533 0.76226 0.76317 1.21584 1.22235 1.22057 1.20112 0.77261 0.95637 1.50254 0.89875 1.46091 1.00369 1.01862 1.86861 1.23235 0.88003 0.94873 0.97198 1.21819 0.93032 1.00868 0.79812 1.21689 0.93893 0.97491 1.02851 1.22154 0.81044 0.97972 0.98515 1.86500 1.22225 1.40031 1.89183 1.45316 1.48230 1.31995 1.07438 1.17980 0.79669 0.81386 0.86058 1.90550 1.42593 1.37417 1.69348 1.20412 0.98305 0.95106 0.93670 1.22467 0.98425 0.99103 0.96016 1.22890 0.94902 0.95636 0.91093 1.67787 1.08004 1.00802 1.40373 1.18881 0.97284 0.94159 0.89492 1.20753 0.98571 0.92475 1.00187 1.20987 0.97911 0.98104 0.94724 1.21104 0.99994 0.98949 0.93860 1.22114 0.94209 0.91576 1.03592 1.18680 0.99358 0.95267 0.93486 1.22627 0.87519 0.92602 0.97433 0.92847 0.92811 0.92042 0.89982 0.88616 0.94114 0.93488 0.77917 0.75910 0.83896 0.81694 0.84697 0.85320 0.85351 0.81261 0.93148 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.00 13.70 55.49 0.76 -28.24 16 2 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 3 Si 1.07 27.59 25.06 -169.99 -4.26 23.33 16 4 H -0.29 -7.05 6.63 56.52 0.37 -6.68 16 5 H -0.29 -7.75 7.11 56.52 0.40 -7.34 16 6 H -0.29 -7.39 6.43 56.52 0.36 -7.03 16 7 C -0.31 -8.48 11.09 -15.06 -0.17 -8.64 16 8 H 0.08 2.40 8.05 -52.48 -0.42 1.98 16 9 N -0.62 -14.45 3.69 -184.58 -0.68 -15.13 16 10 C 0.09 1.98 5.35 -8.38 -0.04 1.93 16 11 C 0.13 2.21 0.74 -131.56 -0.10 2.11 16 12 C -0.12 -1.79 5.05 -26.73 -0.14 -1.92 16 13 C 0.08 0.98 6.75 37.16 0.25 1.23 16 14 O -0.57 -6.95 13.66 -35.23 -0.48 -7.43 16 15 N -0.68 -10.53 5.29 -48.21 -0.25 -10.79 16 16 C 0.56 9.15 7.45 -12.30 -0.09 9.06 16 17 O -0.52 -9.49 11.51 5.33 0.06 -9.43 16 18 C -0.06 -0.93 5.94 -104.34 -0.62 -1.55 16 19 C -0.14 -1.61 9.58 -38.95 -0.37 -1.98 16 20 C 0.13 1.40 11.14 -17.52 -0.20 1.20 16 21 N -0.46 -6.12 10.30 -11.00 -0.11 -6.23 16 22 C 0.12 1.72 6.61 -84.87 -0.56 1.16 16 23 C -0.10 -1.17 9.98 -39.43 -0.39 -1.57 16 24 C -0.10 -0.99 9.94 -39.95 -0.40 -1.39 16 25 C -0.12 -1.39 9.96 -39.88 -0.40 -1.79 16 26 C -0.10 -1.39 9.25 -39.60 -0.37 -1.76 16 27 C -0.07 -0.97 5.76 -106.52 -0.61 -1.59 16 28 C 0.13 2.18 7.13 -8.51 -0.06 2.12 16 29 H 0.26 7.98 8.73 -40.82 -0.36 7.62 16 30 H 0.05 1.11 7.87 -51.93 -0.41 0.71 16 31 H 0.06 1.45 3.96 -51.92 -0.21 1.24 16 32 H 0.08 1.21 7.87 -51.93 -0.41 0.80 16 33 H 0.10 1.60 5.87 -51.93 -0.30 1.29 16 34 H 0.04 0.46 8.13 -51.93 -0.42 0.04 16 35 H 0.05 0.51 7.64 -51.93 -0.40 0.11 16 36 H 0.37 2.65 9.12 45.56 0.42 3.07 16 37 H 0.40 5.46 6.90 -40.82 -0.28 5.18 16 38 H 0.14 1.25 6.60 -52.48 -0.35 0.91 16 39 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 41 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.17 2.66 4.99 -52.49 -0.26 2.40 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 LS Contribution 364.79 15.07 5.50 5.50 Total: -1.00 -35.73 364.79 -8.63 -44.36 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -4.80 Total: 8.03 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -4.36 Total: -3.97 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.29 Total: -60.38 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.42 Total: -16.86 kcal Atomic # 14 Polarization: 27.59 SS G_CDS: -4.26 Total: 23.33 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.73 -8.63 -44.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755333528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.766 kcal (2) G-P(sol) polarization free energy of solvation -35.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds