Wall clock time and date at job start Sat Apr 11 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99752 * 2 1 4 4 H 1.48499 * 109.46913 * 234.55940 * 3 2 1 5 5 H 1.48496 * 109.47319 * 354.56106 * 3 2 1 6 6 H 1.48502 * 109.47081 * 114.56229 * 3 2 1 7 7 C 1.38811 * 120.00029 * 179.72055 * 2 1 3 8 8 H 1.08003 * 120.00270 * 2.75380 * 7 2 1 9 9 N 1.36939 * 119.99806 * 182.76316 * 7 2 1 10 10 C 1.47064 * 136.06078 * 354.02301 * 9 7 2 11 11 C 1.53753 * 87.88948 * 152.96807 * 10 9 7 12 12 C 1.53003 * 114.08686 * 139.78164 * 11 10 9 13 13 C 1.52997 * 109.46914 * 207.30391 * 12 11 10 14 14 O 1.42906 * 109.46629 * 185.08897 * 13 12 11 15 15 N 1.46505 * 114.57510 * 272.66695 * 11 10 9 16 16 C 1.34775 * 119.99869 * 279.13386 * 15 11 10 17 17 O 1.21544 * 120.00276 * 5.01210 * 16 15 11 18 18 C 1.47906 * 119.99879 * 185.00538 * 16 15 11 19 19 C 1.38888 * 121.11010 * 6.30059 * 18 16 15 20 20 C 1.39279 * 119.57762 * 179.69017 * 19 18 16 21 21 N 1.30987 * 121.88044 * 0.64668 * 20 19 18 22 22 C 1.33535 * 121.83081 * 359.65416 * 21 20 19 23 23 C 1.40714 * 120.97129 * 180.02562 * 22 21 20 24 24 C 1.36060 * 119.74354 * 179.97438 * 23 22 21 25 25 C 1.39353 * 121.05272 * 359.97438 * 24 23 22 26 26 C 1.36243 * 120.84147 * 359.97438 * 25 24 23 27 27 C 1.40107 * 119.64302 * 0.02562 * 26 25 24 28 28 C 1.47073 * 136.05693 * 174.40382 * 9 7 2 29 29 H 0.97002 * 119.99318 * 185.01920 * 1 2 3 30 30 H 1.08994 * 113.47404 * 267.70540 * 10 9 7 31 31 H 1.09011 * 113.46192 * 38.14056 * 10 9 7 32 32 H 1.09001 * 109.47098 * 327.30700 * 12 11 10 33 33 H 1.09002 * 109.47037 * 87.30461 * 12 11 10 34 34 H 1.08995 * 109.47355 * 305.07994 * 13 12 11 35 35 H 1.08992 * 109.47289 * 65.08967 * 13 12 11 36 36 H 0.96705 * 113.99730 * 180.02562 * 14 13 12 37 37 H 0.97000 * 119.99558 * 99.13999 * 15 11 10 38 38 H 1.08003 * 120.21017 * 0.02562 * 19 18 16 39 39 H 1.07997 * 119.05422 * 180.27419 * 20 19 18 40 40 H 1.08000 * 120.12957 * 359.95685 * 23 22 21 41 41 H 1.07999 * 119.47042 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.57910 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.18380 * 179.97438 * 26 25 24 44 44 H 1.09000 * 113.46374 * 321.86456 * 28 9 7 45 45 H 1.08994 * 113.46476 * 92.24001 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.2007 1.6405 -1.1407 5 1 1.2906 2.7433 -0.1327 6 1 3.0017 1.7555 1.2734 7 6 2.0103 -1.2021 0.0059 8 1 1.4713 -2.1371 -0.0345 9 7 3.3785 -1.2025 0.0630 10 6 4.4404 -0.1860 0.0206 11 6 5.3156 -1.1480 0.8407 12 6 6.7806 -1.1880 0.4012 13 6 7.3790 -2.5535 0.7448 14 8 8.7759 -2.5508 0.4432 15 7 5.1493 -1.0358 2.2920 16 6 5.7844 -0.0590 2.9695 17 8 6.4213 0.7831 2.3675 18 6 5.7062 -0.0118 4.4458 19 6 5.0957 -1.0310 5.1650 20 6 5.0457 -0.9571 6.5550 21 7 5.5495 0.0578 7.2123 22 6 6.1456 1.0759 6.5869 23 6 6.6812 2.1570 7.3112 24 6 7.2838 3.1811 6.6485 25 6 7.3815 3.1791 5.2584 26 6 6.8755 2.1490 4.5241 27 6 6.2482 1.0776 5.1736 28 6 4.4329 -2.2202 0.1871 29 1 -0.4849 -0.8369 0.0735 30 1 4.8231 0.0005 -0.9828 31 1 4.1850 0.7309 0.5520 32 1 6.8416 -1.0248 -0.6748 33 1 7.3368 -0.4067 0.9192 34 1 7.2370 -2.7557 1.8064 35 1 6.8821 -3.3260 0.1580 36 1 9.2215 -3.3871 0.6362 37 1 4.5823 -1.6646 2.7652 38 1 4.6672 -1.8782 4.6501 39 1 4.5729 -1.7565 7.1061 40 1 6.6138 2.1739 8.3890 41 1 7.6937 4.0084 7.2088 42 1 7.8652 4.0042 4.7567 43 1 6.9568 2.1585 3.4472 44 1 4.1711 -3.0366 0.8603 45 1 4.8128 -2.5708 -0.7724 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755333528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:10 Heat of formation + Delta-G solvation = 20.952336 kcal Electronic energy + Delta-G solvation = -30093.104387 eV Core-core repulsion = 26077.100604 eV Total energy + Delta-G solvation = -4016.003783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.34108 -41.42780 -39.53702 -38.10974 -37.74022 -35.45794 -34.72090 -34.01749 -32.38289 -31.56397 -30.88964 -29.05566 -27.33013 -26.41404 -24.80730 -24.58207 -23.83194 -22.93457 -21.97404 -20.64361 -19.64391 -19.27010 -18.71919 -18.45479 -18.24176 -17.60867 -16.75070 -16.48821 -16.24628 -16.14030 -15.93050 -15.70967 -15.66911 -15.31567 -15.08703 -15.01309 -14.83808 -14.82107 -14.20664 -14.08500 -13.56358 -13.23481 -13.07994 -12.92718 -12.81286 -12.61552 -12.56009 -12.34464 -12.26746 -11.88880 -11.57825 -11.39632 -11.36185 -11.22348 -11.04183 -10.81680 -10.31972 -10.19126 -9.83500 -9.32308 -9.24784 -8.64536 -5.50629 -0.99105 -0.25190 0.63996 1.31608 1.34607 1.54205 1.66871 1.81759 2.06060 2.41543 2.83806 3.04730 3.07597 3.15813 3.24748 3.38605 3.51377 3.60290 3.66118 3.83540 4.04359 4.13586 4.17699 4.24445 4.28655 4.34969 4.39083 4.47802 4.52043 4.54894 4.58922 4.64385 4.64998 4.73543 4.79582 5.00811 5.03468 5.10527 5.13106 5.24034 5.32375 5.43885 5.47851 5.58210 5.86476 5.92094 6.35611 6.66656 6.76415 6.92948 7.01356 7.27855 8.20261 8.89744 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009469 B = 0.004397 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.231325 B = 6366.310777 C = 7623.825271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.072 4.072 3 Si 1.104 2.896 4 H -0.272 1.272 5 H -0.306 1.306 6 H -0.293 1.293 7 C -0.277 4.277 8 H 0.066 0.934 9 N -0.651 5.651 10 C 0.077 3.923 11 C 0.156 3.844 12 C -0.115 4.115 13 C 0.087 3.913 14 O -0.593 6.593 15 N -0.678 5.678 16 C 0.560 3.440 17 O -0.547 6.547 18 C -0.094 4.094 19 C -0.124 4.124 20 C 0.126 3.874 21 N -0.473 5.473 22 C 0.101 3.899 23 C -0.106 4.106 24 C -0.092 4.092 25 C -0.113 4.113 26 C -0.131 4.131 27 C -0.086 4.086 28 C 0.132 3.868 29 H 0.252 0.748 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.397 0.603 37 H 0.414 0.586 38 H 0.172 0.828 39 H 0.206 0.794 40 H 0.155 0.845 41 H 0.167 0.833 42 H 0.151 0.849 43 H 0.148 0.852 44 H 0.075 0.925 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.844 -4.239 13.421 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.935 3.065 4 H -0.198 1.198 5 H -0.235 1.235 6 H -0.221 1.221 7 C -0.404 4.404 8 H 0.084 0.916 9 N -0.379 5.379 10 C -0.049 4.049 11 C 0.068 3.932 12 C -0.154 4.154 13 C 0.010 3.990 14 O -0.402 6.402 15 N -0.329 5.329 16 C 0.348 3.652 17 O -0.427 6.427 18 C -0.106 4.106 19 C -0.145 4.145 20 C -0.046 4.046 21 N -0.181 5.181 22 C -0.020 4.020 23 C -0.124 4.124 24 C -0.112 4.112 25 C -0.131 4.131 26 C -0.150 4.150 27 C -0.089 4.089 28 C 0.006 3.994 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.247 0.753 37 H 0.252 0.748 38 H 0.189 0.811 39 H 0.223 0.777 40 H 0.173 0.827 41 H 0.185 0.815 42 H 0.168 0.832 43 H 0.165 0.835 44 H 0.093 0.907 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 18.716 -1.340 13.621 23.187 hybrid contribution -0.716 -2.416 -0.946 2.691 sum 18.001 -3.756 12.675 22.333 Atomic orbital electron populations 1.70993 1.06482 1.28785 1.55581 1.26422 0.96482 1.03380 1.00295 0.83226 0.72672 0.73747 0.76872 1.19832 1.23477 1.22145 1.20024 0.79687 0.94437 1.46277 0.91587 1.46124 0.99774 1.04950 1.87048 1.23455 0.88598 0.94564 0.98246 1.21477 0.93565 0.98183 0.79958 1.21588 0.92290 0.99033 1.02517 1.22032 0.81327 0.96244 0.99401 1.86436 1.22225 1.42156 1.89354 1.45290 1.48454 1.32247 1.06924 1.18312 0.79043 0.80903 0.86957 1.90549 1.43633 1.38327 1.70152 1.20397 1.00764 0.96716 0.92683 1.22836 0.96493 0.98708 0.96436 1.23569 0.94029 0.95897 0.91124 1.67853 1.08301 1.01248 1.40741 1.19215 0.98220 0.95296 0.89285 1.21111 0.98024 0.92051 1.01223 1.21366 0.96912 0.98711 0.94163 1.21438 0.98475 0.98409 0.94734 1.22030 0.96751 0.93278 1.02898 1.18886 1.00007 0.95690 0.94280 1.22846 0.85172 0.92371 0.98973 0.93884 0.92154 0.94556 0.89938 0.90666 0.93223 0.91452 0.75276 0.74773 0.81100 0.77741 0.82734 0.81536 0.83163 0.83455 0.90655 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.23 13.70 21.65 0.30 -61.93 16 2 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 3 Si 1.10 57.42 25.06 68.60 1.72 59.14 16 4 H -0.27 -13.17 6.63 99.48 0.66 -12.51 16 5 H -0.31 -16.31 7.11 99.48 0.71 -15.61 16 6 H -0.29 -15.04 6.43 99.48 0.64 -14.40 16 7 C -0.28 -15.29 11.09 84.03 0.93 -14.35 16 8 H 0.07 3.83 8.05 -2.91 -0.02 3.81 16 9 N -0.65 -29.35 3.69 -737.89 -2.72 -32.08 16 10 C 0.08 3.22 5.35 83.26 0.45 3.67 16 11 C 0.16 4.96 0.74 4.16 0.00 4.96 16 12 C -0.12 -3.23 5.05 30.59 0.15 -3.08 16 13 C 0.09 1.85 6.75 71.98 0.49 2.34 16 14 O -0.59 -12.76 13.66 -148.98 -2.04 -14.79 16 15 N -0.68 -20.14 5.29 -424.73 -2.25 -22.38 16 16 C 0.56 18.22 7.45 86.80 0.65 18.87 16 17 O -0.55 -20.55 11.51 -3.85 -0.04 -20.60 16 18 C -0.09 -2.72 5.94 -19.68 -0.12 -2.84 16 19 C -0.12 -2.64 9.58 22.68 0.22 -2.42 16 20 C 0.13 2.47 11.14 85.07 0.95 3.42 16 21 N -0.47 -11.76 10.30 -188.73 -1.94 -13.70 16 22 C 0.10 2.72 6.61 40.35 0.27 2.99 16 23 C -0.11 -2.26 9.98 22.37 0.22 -2.04 16 24 C -0.09 -1.68 9.94 22.03 0.22 -1.46 16 25 C -0.11 -2.50 9.96 22.07 0.22 -2.28 16 26 C -0.13 -3.87 9.25 22.26 0.21 -3.66 16 27 C -0.09 -2.58 5.76 -21.09 -0.12 -2.70 16 28 C 0.13 4.21 7.13 83.17 0.59 4.80 16 29 H 0.25 15.91 8.73 -92.71 -0.81 15.10 16 30 H 0.06 2.44 7.87 -2.39 -0.02 2.42 16 31 H 0.04 1.72 3.96 -2.38 -0.01 1.71 16 32 H 0.08 2.29 7.87 -2.39 -0.02 2.27 16 33 H 0.07 2.48 5.87 -2.39 -0.01 2.47 16 34 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 35 H 0.07 1.17 7.64 -2.39 -0.02 1.15 16 36 H 0.40 4.39 9.12 -74.05 -0.68 3.71 16 37 H 0.41 10.31 6.90 -92.71 -0.64 9.67 16 38 H 0.17 2.48 6.60 -2.91 -0.02 2.46 16 39 H 0.21 2.21 8.06 -2.91 -0.02 2.18 16 40 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 41 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 42 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 43 H 0.15 4.95 4.99 -2.91 -0.01 4.93 16 44 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 45 H 0.08 2.25 8.10 -2.39 -0.02 2.23 16 Total: -1.00 -81.03 364.79 -1.59 -82.62 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -0.41 Total: 21.36 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 5.79 Total: 2.36 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -6.61 Total: -130.09 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -2.08 Total: -35.39 kcal Atomic # 14 Polarization: 57.42 SS G_CDS: 1.72 Total: 59.14 kcal Total: -81.03 -1.59 -82.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755333528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.570 kcal (2) G-P(sol) polarization free energy of solvation -81.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds