Wall clock time and date at job start Sat Apr 11 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 13 13 O 1.42903 * 109.47059 * 295.00261 * 12 10 9 14 14 C 1.52999 * 109.46963 * 154.72381 * 10 9 7 15 15 N 1.46500 * 109.47226 * 304.99288 * 14 10 9 16 16 C 1.34776 * 119.99923 * 180.02562 * 15 14 10 17 17 O 1.21511 * 120.00427 * 0.02562 * 16 15 14 18 18 C 1.48182 * 119.99554 * 180.02562 * 16 15 14 19 19 C 1.39102 * 119.66382 * 179.72608 * 18 16 15 20 20 C 1.39729 * 118.91419 * 179.77723 * 19 18 16 21 21 C 1.48372 * 120.87023 * 180.25845 * 20 19 18 22 22 C 1.39349 * 120.12389 * 359.96360 * 21 20 19 23 23 C 1.38017 * 119.87502 * 179.72158 * 22 21 20 24 24 C 1.38325 * 120.11990 * 0.57232 * 23 22 21 25 25 C 1.38323 * 120.24747 * 359.67661 * 24 23 22 26 26 C 1.38009 * 120.12339 * 0.04671 * 25 24 23 27 27 C 1.39729 * 118.25446 * 0.49006 * 20 19 18 28 28 C 1.38317 * 119.21548 * 359.75163 * 27 20 19 29 29 N 1.31577 * 121.02836 * 0.02562 * 28 27 20 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47241 * 55.00267 * 12 10 9 33 33 H 1.09002 * 109.47280 * 175.00361 * 12 10 9 34 34 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 35 35 H 1.08995 * 109.47415 * 64.99597 * 14 10 9 36 36 H 1.09008 * 109.47087 * 184.99936 * 14 10 9 37 37 H 0.96998 * 120.00120 * 0.02562 * 15 14 10 38 38 H 1.08004 * 120.54465 * 359.97438 * 19 18 16 39 39 H 1.07999 * 120.06037 * 359.97036 * 22 21 20 40 40 H 1.07996 * 119.93938 * 180.29944 * 23 22 21 41 41 H 1.07997 * 119.87432 * 179.70303 * 24 23 22 42 42 H 1.08007 * 119.93555 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.06215 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.39215 * 179.73250 * 27 20 19 45 45 H 1.07999 * 119.48657 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9685 -3.5476 0.5965 12 6 2.4223 -4.0429 -1.4277 13 8 1.2283 -4.2995 -2.1697 14 6 1.1804 -4.7490 0.6220 15 7 0.7334 -4.3257 1.9514 16 6 -0.0559 -5.1342 2.6861 17 8 -0.3964 -6.2145 2.2461 18 6 -0.5084 -4.7057 4.0305 19 6 -1.3276 -5.5432 4.7805 20 6 -1.7413 -5.1255 6.0481 21 6 -2.6105 -5.9866 6.8873 22 6 -3.0273 -7.2301 6.4162 23 6 -3.8311 -8.0294 7.2035 24 6 -4.2328 -7.5931 8.4532 25 6 -3.8263 -6.3575 8.9237 26 6 -3.0178 -5.5524 8.1473 27 6 -1.3188 -3.8735 6.5025 28 6 -0.5086 -3.0992 5.6919 29 7 -0.1329 -3.5238 4.5045 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.9722 -3.2261 -1.8952 33 1 3.0428 -4.9390 -1.4164 34 1 1.3838 -4.5509 -3.0904 35 1 0.3131 -4.9201 -0.0155 36 1 1.7553 -5.6711 0.7087 37 1 1.0055 -3.4635 2.3028 38 1 -1.6363 -6.5020 4.3907 39 1 -2.7186 -7.5694 5.4385 40 1 -4.1508 -8.9953 6.8414 41 1 -4.8657 -8.2197 9.0640 42 1 -4.1425 -6.0220 9.9004 43 1 -2.7014 -4.5877 8.5155 44 1 -1.6216 -3.5146 7.4751 45 1 -0.1792 -2.1310 6.0390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755643835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:15 Heat of formation + Delta-G solvation = -8.521005 kcal Electronic energy + Delta-G solvation = -28133.501508 eV Core-core repulsion = 24116.219665 eV Total energy + Delta-G solvation = -4017.281843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.72566 -39.38086 -38.53309 -37.04187 -34.88059 -34.00513 -33.33053 -31.90878 -31.33372 -30.88213 -29.82172 -28.29392 -25.86086 -24.48906 -24.08129 -23.52288 -22.28074 -21.86887 -20.10431 -19.95149 -18.19978 -17.52020 -17.07026 -16.61789 -16.54044 -15.92922 -15.59872 -15.40787 -15.12244 -14.79328 -14.59505 -14.37633 -14.06626 -13.96006 -13.69483 -13.42045 -13.37880 -13.32363 -13.06631 -12.88061 -12.71673 -12.22780 -11.93208 -11.60000 -11.38079 -11.18178 -10.83883 -10.79814 -10.59358 -10.54774 -10.09305 -10.06894 -9.72980 -9.46111 -9.31297 -9.29479 -9.26979 -8.92247 -8.64330 -8.52302 -6.97937 -5.75085 -3.05404 0.29912 0.75391 1.06994 1.63355 2.93768 3.42433 3.44687 3.47974 3.49146 3.52782 4.01081 4.13419 4.30751 4.43480 4.57614 4.62638 4.70528 4.85334 4.86411 4.92869 4.96402 5.07796 5.24694 5.37839 5.45545 5.46120 5.56747 5.60078 5.61096 5.73943 5.77981 5.82630 5.92383 6.06341 6.09222 6.12705 6.17200 6.30814 6.39790 6.48824 6.54736 6.61886 6.77656 6.92904 7.67043 7.70727 8.06996 8.23847 8.41307 8.57087 9.53560 10.08849 10.45287 11.46417 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013986 B = 0.002481 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.473147 B =11284.238431 C =12862.753715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.712 5.712 10 C 0.165 3.835 11 H 0.066 0.934 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.116 3.884 15 N -0.688 5.688 16 C 0.564 3.436 17 O -0.549 6.549 18 C 0.093 3.907 19 C -0.109 4.109 20 C -0.012 4.012 21 C -0.050 4.050 22 C -0.102 4.102 23 C -0.118 4.118 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.103 4.103 27 C -0.150 4.150 28 C 0.107 3.893 29 N -0.448 5.448 30 H 0.256 0.744 31 H 0.389 0.611 32 H 0.049 0.951 33 H 0.027 0.973 34 H 0.363 0.637 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.421 0.579 38 H 0.149 0.851 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.140 0.860 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.299 -13.942 16.270 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.087 0.913 9 N -0.353 5.353 10 C 0.054 3.946 11 H 0.084 0.916 12 C -0.021 4.021 13 O -0.363 6.363 14 C -0.009 4.009 15 N -0.338 5.338 16 C 0.348 3.652 17 O -0.427 6.427 18 C -0.045 4.045 19 C -0.130 4.130 20 C -0.020 4.020 21 C -0.050 4.050 22 C -0.120 4.120 23 C -0.136 4.136 24 C -0.133 4.133 25 C -0.139 4.139 26 C -0.122 4.122 27 C -0.170 4.170 28 C -0.052 4.052 29 N -0.160 5.160 30 H 0.065 0.935 31 H 0.224 0.776 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.208 0.792 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.260 0.740 38 H 0.166 0.834 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.158 0.842 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.138 -13.849 15.961 21.533 hybrid contribution 0.055 0.849 0.057 0.852 sum -4.083 -13.000 16.018 21.029 Atomic orbital electron populations 1.69676 1.05070 1.25730 1.56726 1.24738 0.95432 0.97595 1.02634 0.86300 0.78512 0.83722 0.77751 1.21417 1.21778 1.21235 1.19152 0.90829 0.84047 1.43770 0.91279 1.42344 1.06050 0.98996 1.87948 1.20586 0.95065 0.87035 0.91894 0.91598 1.23037 0.86495 0.97231 0.95385 1.86575 1.32186 1.91685 1.25883 1.21642 0.99691 0.97026 0.82508 1.45879 1.48656 1.21864 1.17430 1.17825 0.79257 0.84399 0.83711 1.90739 1.57870 1.22358 1.71767 1.21207 0.96727 0.91001 0.95575 1.22147 0.96420 1.01201 0.93190 1.19075 0.95693 0.93871 0.93323 1.18671 0.97916 0.94275 0.94142 1.21367 0.97117 0.93367 1.00147 1.21138 0.98023 0.99928 0.94524 1.21278 0.99585 0.96324 0.96124 1.21103 0.98208 0.94614 0.99935 1.21247 0.97591 0.99921 0.93405 1.22396 0.98769 0.94272 1.01549 1.22783 0.93831 0.99664 0.88935 1.67633 1.20842 1.13403 1.14079 0.93456 0.77645 0.93277 0.95523 0.79198 0.90337 0.91885 0.74049 0.83367 0.85196 0.85564 0.85881 0.85679 0.85478 0.84202 0.81717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.79 13.06 55.49 0.72 -27.07 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.63 9.93 -15.06 -0.15 -6.78 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.71 -17.47 4.51 -53.43 -0.24 -17.71 16 10 C 0.17 3.25 2.84 -67.93 -0.19 3.06 16 11 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 12 C 0.06 1.06 6.86 37.16 0.25 1.31 16 13 O -0.56 -10.15 12.64 -35.23 -0.45 -10.60 16 14 C 0.12 2.15 5.12 -4.04 -0.02 2.13 16 15 N -0.69 -13.04 5.38 -61.14 -0.33 -13.36 16 16 C 0.56 10.57 7.81 -12.18 -0.10 10.47 16 17 O -0.55 -11.14 16.32 5.36 0.09 -11.05 16 18 C 0.09 1.54 6.75 -83.06 -0.56 0.98 16 19 C -0.11 -1.53 9.02 -38.70 -0.35 -1.87 16 20 C -0.01 -0.14 5.91 -104.61 -0.62 -0.76 16 21 C -0.05 -0.52 5.88 -104.90 -0.62 -1.13 16 22 C -0.10 -0.99 9.45 -39.25 -0.37 -1.36 16 23 C -0.12 -0.96 10.03 -39.63 -0.40 -1.36 16 24 C -0.11 -0.84 10.04 -39.52 -0.40 -1.24 16 25 C -0.12 -0.89 10.03 -39.63 -0.40 -1.29 16 26 C -0.10 -0.88 9.45 -39.25 -0.37 -1.25 16 27 C -0.15 -1.59 9.51 -39.00 -0.37 -1.96 16 28 C 0.11 1.33 11.17 -17.63 -0.20 1.14 16 29 N -0.45 -7.21 9.53 -9.88 -0.09 -7.31 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.39 10.65 7.80 -40.82 -0.32 10.33 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.36 4.74 9.12 45.56 0.42 5.16 16 35 H 0.08 1.62 7.39 -51.93 -0.38 1.24 16 36 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 37 H 0.42 8.39 7.46 -40.82 -0.30 8.08 16 38 H 0.15 1.96 5.92 -52.48 -0.31 1.65 16 39 H 0.13 1.20 6.30 -52.49 -0.33 0.87 16 40 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 43 H 0.13 0.83 6.29 -52.49 -0.33 0.50 16 44 H 0.14 1.01 6.33 -52.49 -0.33 0.68 16 45 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -34.05 385.08 -9.28 -43.33 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -4.82 Total: 21.14 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -4.94 Total: -0.22 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: 0.06 Total: -65.45 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.36 Total: -21.65 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.05 -9.28 -43.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755643835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.810 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds