Wall clock time and date at job start Sat Apr 11 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 13 13 O 1.42903 * 109.47059 * 295.00261 * 12 10 9 14 14 C 1.52999 * 109.46963 * 154.72381 * 10 9 7 15 15 N 1.46500 * 109.47226 * 304.99288 * 14 10 9 16 16 C 1.34776 * 119.99923 * 180.02562 * 15 14 10 17 17 O 1.21511 * 120.00427 * 0.02562 * 16 15 14 18 18 C 1.48182 * 119.99554 * 180.02562 * 16 15 14 19 19 C 1.39102 * 119.66382 * 179.72608 * 18 16 15 20 20 C 1.39729 * 118.91419 * 179.77723 * 19 18 16 21 21 C 1.48372 * 120.87023 * 180.25845 * 20 19 18 22 22 C 1.39349 * 120.12389 * 359.96360 * 21 20 19 23 23 C 1.38017 * 119.87502 * 179.72158 * 22 21 20 24 24 C 1.38325 * 120.11990 * 0.57232 * 23 22 21 25 25 C 1.38323 * 120.24747 * 359.67661 * 24 23 22 26 26 C 1.38009 * 120.12339 * 0.04671 * 25 24 23 27 27 C 1.39729 * 118.25446 * 0.49006 * 20 19 18 28 28 C 1.38317 * 119.21548 * 359.75163 * 27 20 19 29 29 N 1.31577 * 121.02836 * 0.02562 * 28 27 20 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47241 * 55.00267 * 12 10 9 33 33 H 1.09002 * 109.47280 * 175.00361 * 12 10 9 34 34 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 35 35 H 1.08995 * 109.47415 * 64.99597 * 14 10 9 36 36 H 1.09008 * 109.47087 * 184.99936 * 14 10 9 37 37 H 0.96998 * 120.00120 * 0.02562 * 15 14 10 38 38 H 1.08004 * 120.54465 * 359.97438 * 19 18 16 39 39 H 1.07999 * 120.06037 * 359.97036 * 22 21 20 40 40 H 1.07996 * 119.93938 * 180.29944 * 23 22 21 41 41 H 1.07997 * 119.87432 * 179.70303 * 24 23 22 42 42 H 1.08007 * 119.93555 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.06215 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.39215 * 179.73250 * 27 20 19 45 45 H 1.07999 * 119.48657 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9685 -3.5476 0.5965 12 6 2.4223 -4.0429 -1.4277 13 8 1.2283 -4.2995 -2.1697 14 6 1.1804 -4.7490 0.6220 15 7 0.7334 -4.3257 1.9514 16 6 -0.0559 -5.1342 2.6861 17 8 -0.3964 -6.2145 2.2461 18 6 -0.5084 -4.7057 4.0305 19 6 -1.3276 -5.5432 4.7805 20 6 -1.7413 -5.1255 6.0481 21 6 -2.6105 -5.9866 6.8873 22 6 -3.0273 -7.2301 6.4162 23 6 -3.8311 -8.0294 7.2035 24 6 -4.2328 -7.5931 8.4532 25 6 -3.8263 -6.3575 8.9237 26 6 -3.0178 -5.5524 8.1473 27 6 -1.3188 -3.8735 6.5025 28 6 -0.5086 -3.0992 5.6919 29 7 -0.1329 -3.5238 4.5045 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.9722 -3.2261 -1.8952 33 1 3.0428 -4.9390 -1.4164 34 1 1.3838 -4.5509 -3.0904 35 1 0.3131 -4.9201 -0.0155 36 1 1.7553 -5.6711 0.7087 37 1 1.0055 -3.4635 2.3028 38 1 -1.6363 -6.5020 4.3907 39 1 -2.7186 -7.5694 5.4385 40 1 -4.1508 -8.9953 6.8414 41 1 -4.8657 -8.2197 9.0640 42 1 -4.1425 -6.0220 9.9004 43 1 -2.7014 -4.5877 8.5155 44 1 -1.6216 -3.5146 7.4751 45 1 -0.1792 -2.1310 6.0390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755643835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:14 Heat of formation + Delta-G solvation = -33.691868 kcal Electronic energy + Delta-G solvation = -28134.592999 eV Core-core repulsion = 24116.219665 eV Total energy + Delta-G solvation = -4018.373333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.79133 -40.44608 -39.55307 -38.57664 -36.41937 -35.31895 -34.70338 -33.21068 -32.69560 -31.72429 -30.62119 -30.06251 -27.20142 -25.73641 -25.36746 -24.96305 -23.14371 -22.67571 -21.64232 -21.22664 -19.54687 -19.03391 -18.18883 -18.08772 -17.68978 -16.98635 -16.71980 -16.56130 -16.42155 -16.24622 -15.68036 -15.45774 -15.40183 -15.15745 -14.91078 -14.84962 -14.60475 -14.35354 -14.20113 -14.10790 -13.81177 -13.61826 -13.11965 -13.03218 -12.74002 -12.62623 -12.28883 -12.20710 -11.92251 -11.84181 -11.72960 -11.46377 -11.43571 -10.96118 -10.71839 -10.58194 -10.37760 -10.01081 -9.89710 -9.38423 -8.99335 -7.87681 -5.17389 -0.57703 -0.27774 0.46281 0.81648 1.49998 1.52671 1.58442 1.68406 2.09554 2.59223 2.70858 3.03172 3.11822 3.35609 3.44587 3.60982 3.62955 3.86281 3.89142 3.92452 3.99479 4.03414 4.07193 4.26029 4.40104 4.43207 4.53491 4.54830 4.55459 4.59763 4.65591 4.69528 4.84288 4.98260 5.00301 5.04154 5.12242 5.20378 5.41163 5.48088 5.55077 5.55448 5.57865 5.61000 6.02884 6.30055 6.40947 6.79116 7.07326 7.10598 7.37917 8.09796 8.35616 9.35094 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013986 B = 0.002481 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.473147 B =11284.238431 C =12862.753715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.281 1.281 5 H -0.302 1.302 6 H -0.275 1.275 7 C -0.237 4.237 8 H 0.081 0.919 9 N -0.722 5.722 10 C 0.160 3.840 11 H 0.078 0.922 12 C 0.067 3.933 13 O -0.584 6.584 14 C 0.125 3.875 15 N -0.691 5.691 16 C 0.560 3.440 17 O -0.574 6.574 18 C 0.064 3.936 19 C -0.116 4.116 20 C -0.009 4.009 21 C -0.074 4.074 22 C -0.121 4.121 23 C -0.127 4.127 24 C -0.113 4.113 25 C -0.123 4.123 26 C -0.105 4.105 27 C -0.131 4.131 28 C 0.098 3.902 29 N -0.482 5.482 30 H 0.248 0.752 31 H 0.371 0.629 32 H 0.038 0.962 33 H 0.068 0.932 34 H 0.386 0.614 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.416 0.584 38 H 0.145 0.855 39 H 0.121 0.879 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.153 0.847 43 H 0.149 0.851 44 H 0.183 0.817 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.973 -14.247 18.816 23.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.207 1.207 5 H -0.228 1.228 6 H -0.201 1.201 7 C -0.369 4.369 8 H 0.099 0.901 9 N -0.362 5.362 10 C 0.051 3.949 11 H 0.096 0.904 12 C -0.014 4.014 13 O -0.391 6.391 14 C 0.001 3.999 15 N -0.341 5.341 16 C 0.346 3.654 17 O -0.454 6.454 18 C -0.073 4.073 19 C -0.137 4.137 20 C -0.017 4.017 21 C -0.074 4.074 22 C -0.139 4.139 23 C -0.145 4.145 24 C -0.130 4.130 25 C -0.141 4.141 26 C -0.123 4.123 27 C -0.150 4.150 28 C -0.061 4.061 29 N -0.194 5.194 30 H 0.056 0.944 31 H 0.203 0.797 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.234 0.766 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.253 0.747 38 H 0.163 0.837 39 H 0.139 0.861 40 H 0.160 0.840 41 H 0.167 0.833 42 H 0.171 0.829 43 H 0.167 0.833 44 H 0.200 0.800 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -3.752 -14.207 18.481 23.611 hybrid contribution -0.105 0.794 -0.617 1.011 sum -3.857 -13.412 17.864 22.670 Atomic orbital electron populations 1.69859 1.06728 1.25779 1.59371 1.25523 0.96169 1.00959 1.03858 0.85244 0.77072 0.79439 0.78124 1.20708 1.22843 1.20128 1.19575 0.91443 0.84838 1.41045 0.90085 1.42449 1.05283 1.00251 1.88204 1.20854 0.94994 0.85308 0.93736 0.90434 1.22848 0.86544 0.98674 0.93337 1.86528 1.32868 1.91863 1.27808 1.21526 0.98771 0.97484 0.82083 1.45894 1.48998 1.21660 1.17508 1.18262 0.78569 0.83945 0.84639 1.90697 1.58740 1.23293 1.72709 1.20896 0.98997 0.92309 0.95062 1.22183 0.96366 1.00899 0.94227 1.19326 0.95280 0.94611 0.92464 1.18724 0.99026 0.94542 0.95136 1.21485 0.98074 0.93945 1.00380 1.21397 0.97689 1.00470 0.94943 1.21675 0.98960 0.96657 0.95755 1.21492 0.97354 0.94327 1.00887 1.21537 0.97283 1.00971 0.92499 1.22804 0.96644 0.92995 1.02572 1.23338 0.93838 1.00857 0.88044 1.67541 1.22301 1.13502 1.16066 0.94357 0.79738 0.94356 0.91421 0.76631 0.92671 0.89855 0.74665 0.83716 0.86069 0.84018 0.83292 0.82883 0.83330 0.80031 0.79085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 3 Si 0.97 45.80 29.55 68.60 2.03 47.83 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.24 -12.78 9.93 84.03 0.83 -11.95 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.72 -36.06 4.51 -322.94 -1.46 -37.51 16 10 C 0.16 6.26 2.84 44.99 0.13 6.39 16 11 H 0.08 2.85 8.08 -2.39 -0.02 2.83 16 12 C 0.07 2.26 6.86 71.98 0.49 2.75 16 13 O -0.58 -20.86 12.64 -148.98 -1.88 -22.74 16 14 C 0.13 4.76 5.12 86.38 0.44 5.21 16 15 N -0.69 -27.32 5.38 -465.65 -2.50 -29.83 16 16 C 0.56 22.15 7.81 86.89 0.68 22.83 16 17 O -0.57 -24.55 16.32 -3.75 -0.06 -24.61 16 18 C 0.06 2.22 6.75 41.85 0.28 2.50 16 19 C -0.12 -3.39 9.02 22.84 0.21 -3.19 16 20 C -0.01 -0.21 5.91 -19.86 -0.12 -0.32 16 21 C -0.07 -1.45 5.88 -20.04 -0.12 -1.57 16 22 C -0.12 -2.33 9.45 22.48 0.21 -2.12 16 23 C -0.13 -1.88 10.03 22.24 0.22 -1.66 16 24 C -0.11 -1.32 10.04 22.31 0.22 -1.09 16 25 C -0.12 -1.39 10.03 22.24 0.22 -1.17 16 26 C -0.10 -1.48 9.45 22.48 0.21 -1.27 16 27 C -0.13 -2.51 9.51 22.65 0.22 -2.29 16 28 C 0.10 2.36 11.17 84.75 0.95 3.31 16 29 N -0.48 -15.93 9.53 -185.18 -1.76 -17.69 16 30 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.37 21.09 7.80 -92.71 -0.72 20.36 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.39 9.63 9.12 -74.06 -0.68 8.96 16 35 H 0.05 2.36 7.39 -2.39 -0.02 2.34 16 36 H 0.08 2.80 8.14 -2.38 -0.02 2.78 16 37 H 0.42 17.33 7.46 -92.71 -0.69 16.63 16 38 H 0.15 4.17 5.92 -2.91 -0.02 4.16 16 39 H 0.12 2.42 6.30 -2.91 -0.02 2.40 16 40 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 41 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 43 H 0.15 1.33 6.29 -2.91 -0.02 1.31 16 44 H 0.18 1.86 6.33 -2.91 -0.02 1.84 16 45 H 0.19 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -76.54 385.08 -0.83 -77.37 By element: Atomic # 1 Polarization: 55.06 SS G_CDS: -1.02 Total: 54.04 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 5.55 Total: 12.69 kcal Atomic # 7 Polarization: -139.14 SS G_CDS: -5.44 Total: -144.58 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -1.94 Total: -47.35 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -76.54 -0.83 -77.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755643835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.680 kcal (2) G-P(sol) polarization free energy of solvation -76.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds