Wall clock time and date at job start Sat Apr 11 2020 06:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99918 * 2 1 4 4 H 1.48497 * 109.47236 * 269.99783 * 3 2 1 5 5 H 1.48500 * 109.47058 * 30.00343 * 3 2 1 6 6 H 1.48503 * 109.46903 * 149.99898 * 3 2 1 7 7 C 1.38722 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99910 * 180.02562 * 7 2 1 9 9 O 1.34779 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.35568 * 117.00219 * 185.05948 * 9 7 2 11 11 C 1.39182 * 119.89533 * 354.43681 * 10 9 7 12 12 C 1.37597 * 120.10036 * 179.97438 * 11 10 9 13 13 C 1.40030 * 119.89538 * 0.02562 * 12 11 10 14 14 C 1.46966 * 120.09793 * 179.97438 * 13 12 11 15 15 C 1.35015 * 119.99856 * 180.02562 * 14 13 12 16 16 C 1.46258 * 120.00185 * 179.72777 * 15 14 13 17 17 O 1.21726 * 119.99604 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00322 * 179.97438 * 16 15 14 19 19 C 1.46495 * 120.00065 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47359 * 179.97438 * 19 18 16 21 21 C 1.52996 * 109.47603 * 180.02562 * 20 19 18 22 22 N 1.46493 * 109.47510 * 180.02562 * 21 20 19 23 23 C 1.36887 * 126.39693 * 90.00102 * 22 21 20 24 24 C 1.34667 * 106.81646 * 180.02562 * 23 22 21 25 25 N 1.34122 * 108.02396 * 359.97438 * 24 23 22 26 26 C 1.30508 * 109.25746 * 359.72935 * 25 24 23 27 27 C 1.40020 * 119.80047 * 0.25502 * 13 12 11 28 28 C 1.37601 * 119.89636 * 359.49193 * 27 13 12 29 29 H 0.96997 * 119.99816 * 359.97438 * 1 2 3 30 30 H 1.07995 * 119.94846 * 359.96514 * 11 10 9 31 31 H 1.08001 * 120.05127 * 180.02562 * 12 11 10 32 32 H 1.07999 * 119.99554 * 0.02562 * 14 13 12 33 33 H 1.08007 * 120.00326 * 359.97438 * 15 14 13 34 34 H 0.97004 * 119.99859 * 0.02562 * 18 16 15 35 35 H 1.09002 * 109.47219 * 300.00429 * 19 18 16 36 36 H 1.09003 * 109.46807 * 59.99987 * 19 18 16 37 37 H 1.09002 * 109.47416 * 300.00443 * 20 19 18 38 38 H 1.09008 * 109.47060 * 59.99801 * 20 19 18 39 39 H 1.09002 * 109.47089 * 300.00634 * 21 20 19 40 40 H 1.09008 * 109.47082 * 59.99806 * 21 20 19 41 41 H 1.07997 * 126.58877 * 359.96183 * 23 22 21 42 42 H 1.07998 * 125.98683 * 180.02562 * 24 23 22 43 43 H 1.07998 * 125.65157 * 180.29267 * 26 25 24 44 44 H 1.08002 * 120.04939 * 179.73839 * 27 13 12 45 45 H 1.08000 * 119.94690 * 180.23542 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0087 -1.2014 -0.0005 8 1 3.0888 -1.2014 -0.0001 9 8 1.3348 -2.3686 -0.0005 10 6 2.0691 -3.5033 0.1054 11 6 3.4591 -3.4339 0.0910 12 6 4.2085 -4.5828 0.1988 13 6 3.5706 -5.8232 0.3227 14 6 4.3667 -7.0532 0.4376 15 6 3.7494 -8.2481 0.5564 16 6 4.5416 -9.4729 0.6647 17 8 5.7573 -9.4147 0.6483 18 7 3.9255 -10.6656 0.7839 19 6 4.7190 -11.8924 0.8918 20 6 3.7828 -13.0961 1.0159 21 6 4.6114 -14.3772 1.1293 22 7 3.7150 -15.5298 1.2475 23 6 3.2071 -16.2730 0.2161 24 6 2.4347 -17.2283 0.7677 25 7 2.4703 -17.0731 2.0995 26 6 3.2401 -16.0614 2.3945 27 6 2.1719 -5.8886 0.3308 28 6 1.4307 -4.7339 0.2277 29 1 -0.4850 0.8400 0.0004 30 1 3.9502 -2.4769 -0.0051 31 1 5.2871 -4.5281 0.1879 32 1 5.4453 -7.0012 0.4270 33 1 2.6707 -8.3001 0.5674 34 1 2.9566 -10.7119 0.7974 35 1 5.3387 -12.0037 0.0021 36 1 5.3567 -11.8361 1.7740 37 1 3.1633 -12.9845 1.9058 38 1 3.1446 -13.1525 0.1339 39 1 5.2311 -14.4890 0.2396 40 1 5.2492 -14.3205 2.0115 41 1 3.3900 -16.1215 -0.8374 42 1 1.8838 -17.9869 0.2317 43 1 3.4588 -15.7063 3.3907 44 1 1.6757 -6.8435 0.4219 45 1 0.3519 -4.7830 0.2377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072509321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:48 Heat of formation + Delta-G solvation = 14.795313 kcal Electronic energy + Delta-G solvation = -26135.987120 eV Core-core repulsion = 22119.716348 eV Total energy + Delta-G solvation = -4016.270772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.89755 -40.92083 -40.57582 -38.51996 -37.16460 -35.08378 -34.73259 -33.99330 -32.00711 -31.91062 -30.31217 -29.70158 -27.59700 -26.87118 -24.54949 -23.71008 -23.02746 -22.23915 -22.11543 -21.65448 -20.63404 -19.73373 -18.85595 -18.36909 -18.20686 -16.88594 -16.77246 -16.46565 -16.34936 -16.09494 -15.90212 -15.63665 -15.55480 -15.29725 -14.92612 -14.80805 -14.66395 -14.54991 -14.11676 -14.07139 -13.60027 -13.51889 -13.48402 -13.28674 -13.13815 -12.71104 -12.70452 -12.56014 -12.21137 -12.13048 -12.01595 -11.21739 -11.11214 -11.05423 -10.91119 -10.58360 -10.55222 -10.07527 -9.89303 -9.42659 -8.67917 -8.52390 -6.18644 -0.24292 0.58460 1.13767 1.16283 1.35877 1.45834 1.52922 1.85545 2.15166 2.25256 2.34967 2.37630 2.86513 3.17837 3.42456 3.73601 3.77037 3.82843 3.92238 3.94545 4.01881 4.08606 4.18287 4.25129 4.32168 4.36472 4.44026 4.47971 4.63015 4.65057 4.70193 4.78942 4.94655 4.95660 5.02965 5.08316 5.19638 5.28412 5.33792 5.37883 5.47010 5.59020 5.63994 5.81727 5.85287 5.97137 6.10672 6.31972 6.58615 6.92054 7.17877 7.28092 7.69076 8.69621 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.031110 B = 0.001289 C = 0.001249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.824361 B =21712.432782 C =22407.438690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.017 4.017 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.418 4.418 8 H 0.106 0.894 9 O -0.220 6.220 10 C 0.129 3.871 11 C -0.249 4.249 12 C -0.040 4.040 13 C -0.171 4.171 14 C 0.015 3.985 15 C -0.247 4.247 16 C 0.551 3.449 17 O -0.594 6.594 18 N -0.718 5.718 19 C 0.123 3.877 20 C -0.132 4.132 21 C 0.107 3.893 22 N -0.456 5.456 23 C -0.050 4.050 24 C -0.063 4.063 25 N -0.545 5.545 26 C 0.175 3.825 27 C -0.038 4.038 28 C -0.207 4.207 29 H 0.275 0.725 30 H 0.124 0.876 31 H 0.145 0.855 32 H 0.125 0.875 33 H 0.151 0.849 34 H 0.416 0.584 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.200 0.800 42 H 0.175 0.825 43 H 0.228 0.772 44 H 0.161 0.839 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.490 -27.589 1.193 29.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.216 4.216 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.493 4.493 8 H 0.123 0.877 9 O -0.125 6.125 10 C 0.077 3.923 11 C -0.268 4.268 12 C -0.058 4.058 13 C -0.172 4.172 14 C -0.005 4.005 15 C -0.268 4.268 16 C 0.342 3.658 17 O -0.477 6.477 18 N -0.369 5.369 19 C -0.001 4.001 20 C -0.171 4.171 21 C -0.015 4.015 22 N -0.138 5.138 23 C -0.183 4.183 24 C -0.210 4.210 25 N -0.264 5.264 26 C -0.108 4.108 27 C -0.056 4.056 28 C -0.226 4.226 29 H 0.084 0.916 30 H 0.142 0.858 31 H 0.162 0.838 32 H 0.143 0.857 33 H 0.168 0.832 34 H 0.252 0.748 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.216 0.784 42 H 0.192 0.808 43 H 0.244 0.756 44 H 0.178 0.822 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.584 -27.773 1.716 29.430 hybrid contribution -0.101 1.496 -0.641 1.631 sum 9.483 -26.277 1.075 27.956 Atomic orbital electron populations 1.70148 1.08059 1.29092 1.47732 1.26595 0.96802 1.02730 0.95465 0.84597 0.77895 0.74512 0.79325 1.18762 1.19567 1.17597 1.21901 0.92720 0.81234 1.53479 0.87713 1.83882 1.36258 1.12767 1.79632 1.20205 0.91576 0.88030 0.92536 1.21203 0.93051 1.00156 1.12411 1.21325 1.00107 0.90712 0.93690 1.18803 0.93241 0.92896 1.12278 1.22172 0.99277 0.90605 0.88437 1.22785 1.01112 0.91287 1.11575 1.18475 0.87125 0.84858 0.75366 1.90787 1.15849 1.88004 1.53050 1.45725 1.11245 1.05576 1.74381 1.21217 0.93911 0.82456 1.02488 1.21994 0.98490 0.92191 1.04395 1.21961 0.91091 0.81657 1.06831 1.45726 1.36806 1.24554 1.06704 1.23181 1.02953 0.96651 0.95560 1.22646 1.05046 1.02910 0.90358 1.70254 1.20902 1.18902 1.16329 1.25536 0.97633 0.94112 0.93513 1.21289 0.92663 0.97463 0.94136 1.20424 1.00367 0.90187 1.11664 0.91603 0.85805 0.83767 0.85695 0.83155 0.74758 0.91455 0.91322 0.90034 0.90210 0.87122 0.86612 0.78352 0.80800 0.75601 0.82200 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.01 13.67 21.62 0.30 -53.72 16 2 C -0.02 -0.93 5.49 84.86 0.47 -0.47 16 3 Si 1.02 41.09 29.55 68.60 2.03 43.11 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 7 C -0.42 -23.32 9.48 67.94 0.64 -22.67 16 8 H 0.11 5.34 5.18 -2.91 -0.02 5.32 16 9 O -0.22 -12.66 9.74 -20.22 -0.20 -12.86 16 10 C 0.13 6.05 6.66 22.72 0.15 6.20 16 11 C -0.25 -10.26 9.14 22.35 0.20 -10.06 16 12 C -0.04 -1.33 9.78 22.55 0.22 -1.11 16 13 C -0.17 -5.11 5.87 -20.12 -0.12 -5.23 16 14 C 0.01 0.37 9.45 23.82 0.23 0.60 16 15 C -0.25 -5.04 9.41 23.61 0.22 -4.82 16 16 C 0.55 11.65 7.74 86.33 0.67 12.32 16 17 O -0.59 -17.33 16.23 -4.43 -0.07 -17.40 16 18 N -0.72 -8.97 5.55 -467.50 -2.60 -11.56 16 19 C 0.12 1.07 5.67 86.38 0.49 1.56 16 20 C -0.13 -0.47 5.65 30.59 0.17 -0.30 16 21 C 0.11 0.27 6.15 86.38 0.53 0.80 16 22 N -0.46 -3.92 2.75 -529.07 -1.46 -5.38 16 23 C -0.05 -0.51 11.58 83.08 0.96 0.45 16 24 C -0.06 -0.97 11.87 83.52 0.99 0.02 16 25 N -0.54 -10.51 11.25 -200.31 -2.25 -12.77 16 26 C 0.17 2.16 12.56 180.26 2.26 4.43 16 27 C -0.04 -1.14 9.40 22.55 0.21 -0.92 16 28 C -0.21 -8.09 9.97 22.34 0.22 -7.86 16 29 H 0.27 14.87 8.31 -92.71 -0.77 14.09 16 30 H 0.12 5.17 5.62 -2.91 -0.02 5.16 16 31 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 32 H 0.13 3.17 7.52 -2.91 -0.02 3.14 16 33 H 0.15 2.26 6.07 -2.91 -0.02 2.24 16 34 H 0.42 3.00 8.45 -92.71 -0.78 2.22 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 0.32 8.14 -2.39 -0.02 0.31 16 38 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 39 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.12 -0.03 8.14 -2.38 -0.02 -0.05 16 41 H 0.20 0.79 8.06 -2.91 -0.02 0.77 16 42 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 43 H 0.23 1.28 8.06 -2.91 -0.02 1.26 16 44 H 0.16 3.38 6.16 -2.91 -0.02 3.37 16 45 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -80.21 392.41 4.52 -75.68 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.24 Total: 21.95 kcal Atomic # 6 Polarization: -35.59 SS G_CDS: 8.53 Total: -27.06 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -6.01 Total: -83.43 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.27 Total: -30.26 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Total: -80.21 4.52 -75.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072509321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.479 kcal (2) G-P(sol) polarization free energy of solvation -80.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds