Wall clock time and date at job start Sat Apr 11 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86805 * 119.99826 * 2 1 4 4 H 1.48496 * 109.47111 * 269.99822 * 3 2 1 5 5 H 1.48500 * 109.46910 * 30.00250 * 3 2 1 6 6 H 1.48504 * 109.46921 * 149.99960 * 3 2 1 7 7 C 1.38651 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99906 * 0.02562 * 7 2 1 9 9 O 1.34832 * 120.00136 * 180.02562 * 7 2 1 10 10 C 1.35754 * 117.00052 * 185.05713 * 9 7 2 11 11 C 1.38884 * 120.06582 * 354.46458 * 10 9 7 12 12 C 1.38098 * 119.92494 * 179.97438 * 11 10 9 13 13 C 1.38298 * 120.07206 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.93199 * 179.97438 * 13 12 11 15 15 N 1.46501 * 109.47131 * 90.00492 * 14 13 12 16 16 C 1.34779 * 119.99959 * 180.02562 * 15 14 13 17 17 O 1.21277 * 120.00296 * 359.97438 * 16 15 14 18 18 C 1.50706 * 119.99758 * 179.97438 * 16 15 14 19 19 H 1.08993 * 109.45858 * 299.97969 * 18 16 15 20 20 C 1.53111 * 109.46255 * 179.97438 * 18 16 15 21 21 C 1.53361 * 109.50071 * 169.70372 * 20 18 16 22 22 C 1.50836 * 108.37423 * 49.96487 * 21 20 18 23 23 C 1.39298 * 127.89570 * 163.35127 * 22 21 20 24 24 N 1.31070 * 108.07600 * 180.15138 * 23 22 21 25 25 N 1.40300 * 108.27151 * 359.97438 * 24 23 22 26 26 H 0.96998 * 126.08902 * 179.97438 * 25 24 23 27 27 C 1.34323 * 107.81521 * 359.95421 * 25 24 23 28 28 C 1.50827 * 128.03407 * 180.34787 * 27 25 24 29 29 C 1.38297 * 120.13813 * 0.27963 * 13 12 11 30 30 C 1.38100 * 120.06883 * 359.48638 * 29 13 12 31 31 H 0.97000 * 120.00236 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.03676 * 359.95623 * 11 10 9 33 33 H 1.08003 * 119.96023 * 179.97438 * 12 11 10 34 34 H 1.09007 * 109.47121 * 330.00259 * 14 13 12 35 35 H 1.09001 * 109.47471 * 210.00101 * 14 13 12 36 36 H 0.97000 * 119.99631 * 359.97438 * 15 14 13 37 37 H 1.09006 * 109.45948 * 49.69665 * 20 18 16 38 38 H 1.09002 * 109.46075 * 289.71481 * 20 18 16 39 39 H 1.08996 * 109.68621 * 290.23756 * 21 20 18 40 40 H 1.09008 * 109.67862 * 169.68353 * 21 20 18 41 41 H 1.07999 * 125.96028 * 0.14054 * 23 22 21 42 42 H 1.08994 * 109.67856 * 282.93593 * 28 27 25 43 43 H 1.09002 * 109.67763 * 43.48477 * 28 27 25 44 44 H 1.08009 * 119.96684 * 179.72119 * 29 13 12 45 45 H 1.08009 * 120.03571 * 180.25538 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5470 1.4402 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3571 -1.2007 0.0011 10 6 3.9735 -2.4055 -0.1051 11 6 3.2235 -3.5744 -0.0921 12 6 3.8535 -4.7985 -0.2008 13 6 5.2296 -4.8612 -0.3229 14 6 5.9139 -6.1987 -0.4407 15 7 6.0165 -6.5720 -1.8537 16 6 6.5965 -7.7376 -2.2023 17 8 7.0339 -8.4772 -1.3465 18 6 6.7014 -8.1218 -3.6558 19 1 5.7027 -8.1852 -4.0876 20 6 7.3968 -9.4807 -3.7753 21 6 7.2770 -9.9921 -5.2161 22 6 7.7099 -8.8893 -6.1497 23 6 8.0649 -8.9951 -7.4925 24 7 8.3777 -7.7984 -7.9260 25 7 8.2289 -6.8932 -6.8644 26 1 8.3931 -5.9379 -6.9009 27 6 7.8180 -7.5851 -5.7889 28 6 7.5113 -7.0609 -4.4083 29 6 5.9797 -3.6993 -0.3308 30 6 5.3553 -2.4719 -0.2274 31 1 -0.4850 0.8400 0.0004 32 1 2.1488 -3.5260 0.0031 33 1 3.2708 -5.7078 -0.1904 34 1 5.3340 -6.9517 0.0929 35 1 6.9125 -6.1353 -0.0083 36 1 5.6663 -5.9806 -2.5381 37 1 6.9243 -10.1913 -3.0971 38 1 8.4496 -9.3741 -3.5139 39 1 6.2423 -10.2643 -5.4243 40 1 7.9203 -10.8616 -5.3517 41 1 8.0798 -9.9046 -8.0748 42 1 8.4415 -6.8695 -3.8734 43 1 6.9351 -6.1389 -4.4854 44 1 7.0547 -3.7517 -0.4218 45 1 5.9413 -1.5646 -0.2378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079959096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:54 Heat of formation + Delta-G solvation = 21.010854 kcal Electronic energy + Delta-G solvation = -27907.977584 eV Core-core repulsion = 23891.976339 eV Total energy + Delta-G solvation = -4016.001245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.89193 -40.05896 -39.29129 -37.20788 -36.33372 -34.59893 -32.95759 -32.52152 -30.80829 -30.42335 -29.63887 -29.48054 -26.25811 -24.94910 -24.12514 -22.86583 -22.24493 -21.89650 -20.68871 -20.41697 -19.08192 -18.07357 -17.99761 -17.45019 -16.98559 -16.01175 -15.78213 -15.35623 -14.96707 -14.75660 -14.53268 -14.30807 -14.18797 -14.00873 -13.92093 -13.87304 -13.49715 -13.41097 -13.14770 -12.88307 -12.77372 -12.33975 -12.30655 -11.98346 -11.88515 -11.55608 -11.27241 -11.11290 -11.01349 -10.89812 -10.83744 -10.82704 -10.27280 -9.91987 -9.85300 -9.53900 -9.09660 -8.99879 -8.63297 -8.44645 -7.54065 -6.54591 -4.21771 1.52072 1.88458 1.96172 2.36758 2.45172 2.62750 3.12196 3.16566 3.23136 3.30903 4.09762 4.12256 4.27906 4.33634 4.45377 4.48178 4.68979 4.74461 4.82521 4.96764 4.97168 5.06177 5.06829 5.13848 5.24191 5.28252 5.42725 5.49314 5.50407 5.60931 5.65730 5.80794 5.87379 5.94255 5.96949 6.00784 6.18263 6.33109 6.36630 6.40699 6.61372 6.83565 6.93127 7.05951 7.12676 7.32710 7.43130 7.46353 7.65506 7.89185 8.12059 8.79773 9.39947 10.52458 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015337 B = 0.002050 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.217806 B =13656.208190 C =14659.096292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.212 6.212 10 C 0.166 3.834 11 C -0.224 4.224 12 C -0.052 4.052 13 C -0.207 4.207 14 C 0.177 3.823 15 N -0.722 5.722 16 C 0.515 3.485 17 O -0.541 6.541 18 C -0.100 4.100 19 H 0.103 0.897 20 C -0.099 4.099 21 C -0.041 4.041 22 C -0.238 4.238 23 C 0.057 3.943 24 N -0.298 5.298 25 N -0.468 5.468 26 H 0.439 0.561 27 C 0.091 3.909 28 C -0.050 4.050 29 C -0.057 4.057 30 C -0.195 4.195 31 H 0.281 0.719 32 H 0.135 0.865 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.401 0.599 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.183 0.817 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.469 -15.857 -10.215 23.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.468 4.468 8 H 0.125 0.875 9 O -0.116 6.116 10 C 0.113 3.887 11 C -0.243 4.243 12 C -0.071 4.071 13 C -0.209 4.209 14 C 0.055 3.945 15 N -0.373 5.373 16 C 0.300 3.700 17 O -0.418 6.418 18 C -0.122 4.122 19 H 0.121 0.879 20 C -0.137 4.137 21 C -0.079 4.079 22 C -0.250 4.250 23 C -0.128 4.128 24 N -0.120 5.120 25 N -0.176 5.176 26 H 0.282 0.718 27 C -0.039 4.039 28 C -0.089 4.089 29 C -0.075 4.075 30 C -0.215 4.215 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.236 0.764 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.200 0.800 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.132 0.868 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.036 -15.336 -10.567 23.936 hybrid contribution -0.355 1.167 0.267 1.249 sum 14.680 -14.169 -10.299 22.855 Atomic orbital electron populations 1.69635 1.05611 1.28731 1.47126 1.24492 0.95050 0.98950 0.95449 0.86175 0.80350 0.81326 0.79034 1.19805 1.20638 1.18320 1.20784 0.76730 0.96733 1.52509 0.87477 1.83576 1.22792 1.25836 1.79419 1.19189 0.91748 0.85517 0.92231 1.21288 1.01278 0.91765 1.09975 1.20706 0.93344 0.96858 0.96192 1.19271 0.93793 0.93501 1.14295 1.20011 0.99972 0.93437 0.81123 1.46381 1.60281 1.21118 1.09510 1.20491 0.77626 0.81195 0.90672 1.90703 1.47941 1.51215 1.51924 1.21305 1.01819 0.96759 0.92305 0.87852 1.21428 1.01410 0.94523 0.96357 1.20028 1.01122 0.95042 0.91743 1.19981 1.15006 0.94334 0.95644 1.23622 0.98526 0.96282 0.94413 1.77519 1.25127 0.99578 1.09763 1.46052 1.53995 1.10393 1.07154 0.71756 1.20779 0.99783 0.92675 0.90646 1.20262 1.01487 0.98163 0.88975 1.20526 0.98370 0.91211 0.97436 1.20213 0.91955 0.97911 1.11399 0.90855 0.84779 0.87081 0.91380 0.91419 0.76414 0.90086 0.91096 0.91037 0.90608 0.80000 0.89028 0.89287 0.86812 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.32 13.96 55.48 0.77 -23.54 16 2 C 0.06 1.74 5.49 -17.52 -0.10 1.65 16 3 Si 0.91 20.75 28.62 -169.99 -4.86 15.89 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.26 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.39 -10.51 9.95 30.89 0.31 -10.21 16 8 H 0.11 2.93 5.44 -52.49 -0.29 2.64 16 9 O -0.21 -5.27 8.59 0.03 0.00 -5.27 16 10 C 0.17 3.53 6.65 -39.11 -0.26 3.27 16 11 C -0.22 -4.40 9.17 -39.39 -0.36 -4.76 16 12 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 13 C -0.21 -2.94 5.25 -104.58 -0.55 -3.49 16 14 C 0.18 2.14 5.80 -5.19 -0.03 2.11 16 15 N -0.72 -7.38 5.45 -61.47 -0.34 -7.71 16 16 C 0.51 5.50 7.13 -10.98 -0.08 5.42 16 17 O -0.54 -7.78 15.81 5.56 0.09 -7.69 16 18 C -0.10 -0.78 2.48 -91.60 -0.23 -1.00 16 19 H 0.10 0.72 8.11 -51.93 -0.42 0.30 16 20 C -0.10 -0.79 4.65 -26.49 -0.12 -0.91 16 21 C -0.04 -0.28 6.28 -27.63 -0.17 -0.45 16 22 C -0.24 -2.00 5.91 -105.05 -0.62 -2.62 16 23 C 0.06 0.49 12.00 -17.48 -0.21 0.28 16 24 N -0.30 -3.06 12.71 30.54 0.39 -2.67 16 25 N -0.47 -3.92 7.34 33.48 0.25 -3.67 16 26 H 0.44 2.53 8.96 -182.45 -1.64 0.90 16 27 C 0.09 0.74 7.08 -82.33 -0.58 0.16 16 28 C -0.05 -0.33 5.42 -27.71 -0.15 -0.48 16 29 C -0.06 -0.83 9.69 -39.61 -0.38 -1.21 16 30 C -0.20 -3.47 9.99 -39.40 -0.39 -3.87 16 31 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 33 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 34 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.40 3.52 8.12 -40.82 -0.33 3.19 16 37 H 0.08 0.70 7.75 -51.93 -0.40 0.30 16 38 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 41 H 0.18 1.04 8.06 -52.49 -0.42 0.61 16 42 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 43 H 0.09 0.47 7.89 -51.93 -0.41 0.06 16 44 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 45 H 0.12 1.97 8.06 -52.48 -0.42 1.54 16 LS Contribution 377.58 15.07 5.69 5.69 Total: -1.00 -31.66 377.58 -9.47 -41.13 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.14 Total: 5.18 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -4.32 Total: -17.32 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 1.07 Total: -37.60 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.86 Total: 15.89 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.66 -9.47 -41.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079959096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.139 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds