Wall clock time and date at job start Sat Apr 11 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86801 * 120.00082 * 2 1 4 4 H 1.48508 * 109.47042 * 269.99953 * 3 2 1 5 5 H 1.48499 * 109.47304 * 29.99718 * 3 2 1 6 6 H 1.48502 * 109.47504 * 150.00079 * 3 2 1 7 7 C 1.38652 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00575 * 179.97438 * 7 2 1 9 9 O 1.34829 * 119.99632 * 0.02562 * 7 2 1 10 10 C 1.35758 * 116.99975 * 185.05201 * 9 7 2 11 11 C 1.38882 * 120.06818 * 354.47347 * 10 9 7 12 12 C 1.38094 * 119.92671 * 179.97438 * 11 10 9 13 13 C 1.38294 * 120.07270 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.93191 * 179.97438 * 13 12 11 15 15 N 1.46500 * 109.47336 * 89.99819 * 14 13 12 16 16 C 1.34774 * 119.99586 * 180.02562 * 15 14 13 17 17 O 1.21276 * 120.00705 * 359.97438 * 16 15 14 18 18 C 1.50706 * 119.99455 * 180.02562 * 16 15 14 19 19 H 1.08997 * 109.46790 * 60.01465 * 18 16 15 20 20 C 1.53107 * 109.46478 * 179.97438 * 18 16 15 21 21 C 1.53361 * 109.51213 * 190.29221 * 20 18 16 22 22 C 1.50838 * 108.37925 * 310.05920 * 21 20 18 23 23 C 1.39292 * 127.89930 * 196.56792 * 22 21 20 24 24 N 1.31078 * 108.07791 * 179.90904 * 23 22 21 25 25 N 1.40292 * 108.26801 * 359.97438 * 24 23 22 26 26 H 0.97004 * 126.08440 * 180.02562 * 25 24 23 27 27 C 1.34326 * 107.81923 * 0.33005 * 25 24 23 28 28 C 1.50822 * 128.03096 * 180.18485 * 27 25 24 29 29 C 1.38299 * 120.13981 * 0.23414 * 13 12 11 30 30 C 1.38105 * 120.06709 * 359.49182 * 29 13 12 31 31 H 0.96996 * 120.00002 * 0.02562 * 1 2 3 32 32 H 1.08003 * 120.03231 * 359.97438 * 11 10 9 33 33 H 1.08004 * 119.96012 * 179.97438 * 12 11 10 34 34 H 1.09004 * 109.47021 * 329.99641 * 14 13 12 35 35 H 1.09001 * 109.47298 * 210.00148 * 14 13 12 36 36 H 0.96996 * 119.99876 * 0.02562 * 15 14 13 37 37 H 1.08999 * 109.46565 * 70.27828 * 20 18 16 38 38 H 1.09002 * 109.46512 * 310.30400 * 20 18 16 39 39 H 1.09002 * 109.68628 * 190.33842 * 21 20 18 40 40 H 1.09006 * 109.68271 * 69.78048 * 21 20 18 41 41 H 1.07998 * 125.96309 * 359.87727 * 23 22 21 42 42 H 1.09005 * 109.89598 * 76.42014 * 28 27 25 43 43 H 1.08998 * 109.56352 * 315.84232 * 28 27 25 44 44 H 1.07997 * 119.96626 * 179.71674 * 29 13 12 45 45 H 1.08002 * 120.03211 * 180.25055 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4002 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5046 0.1076 11 6 3.4572 -3.4394 0.0952 12 6 4.2023 -4.5969 0.2049 13 6 3.5685 -5.8201 0.3263 14 6 4.3847 -7.0814 0.4452 15 7 4.6553 -7.3567 1.8584 16 6 5.3744 -8.4417 2.2078 17 8 5.7972 -9.1903 1.3525 18 6 5.6522 -8.7252 3.6617 19 1 4.7094 -8.8518 4.1937 20 6 6.4815 -10.0065 3.7822 21 6 6.5477 -10.4375 5.2526 22 6 6.9598 -9.2452 6.0795 23 6 7.4469 -9.2362 7.3845 24 7 7.6832 -7.9918 7.7219 25 7 7.3513 -7.1706 6.6339 26 1 7.4264 -6.2039 6.6039 27 6 6.9045 -7.9607 5.6437 28 6 6.4308 -7.5525 4.2712 29 6 2.1873 -5.8889 0.3335 30 6 1.4365 -4.7343 0.2300 31 1 -0.4850 0.8400 -0.0004 32 1 3.9527 -2.4845 0.0000 33 1 5.2811 -4.5469 0.1949 34 1 5.3274 -6.9557 -0.0875 35 1 3.8312 -7.9146 0.0121 36 1 4.3168 -6.7582 2.5425 37 1 7.4901 -9.8226 3.4119 38 1 6.0168 -10.7968 3.1927 39 1 7.2808 -11.2357 5.3686 40 1 5.5678 -10.7882 5.5768 41 1 7.6023 -10.1032 8.0094 42 1 7.2862 -7.3114 3.6401 43 1 5.7789 -6.6829 4.3538 44 1 1.6953 -6.8460 0.4239 45 1 0.3578 -4.7883 0.2397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079959097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:57 Heat of formation + Delta-G solvation = 18.967248 kcal Electronic energy + Delta-G solvation = -27902.576686 eV Core-core repulsion = 23886.486824 eV Total energy + Delta-G solvation = -4016.089863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.87167 -40.01218 -39.13312 -37.04977 -36.28919 -34.53812 -32.93497 -32.41737 -30.70469 -30.33026 -29.54444 -29.42144 -26.07945 -25.07804 -24.14401 -22.84566 -22.11828 -21.87939 -20.70666 -20.38828 -19.06249 -18.15121 -17.98874 -17.21373 -16.86326 -15.94493 -15.77744 -15.27474 -14.80184 -14.71313 -14.58168 -14.36650 -14.20065 -13.99095 -13.83787 -13.76634 -13.51229 -13.29996 -13.12760 -12.85709 -12.80175 -12.31598 -12.06989 -11.86332 -11.72873 -11.46866 -11.25223 -11.08321 -11.01580 -10.86026 -10.82038 -10.74554 -10.53742 -9.88532 -9.83490 -9.48644 -9.05145 -8.96088 -8.61615 -8.35217 -7.38829 -6.58016 -4.17099 1.53967 2.00010 2.06533 2.39378 2.46623 2.65591 3.03613 3.05344 3.10260 3.28011 3.85708 4.12817 4.29674 4.41247 4.49222 4.50340 4.76584 4.84892 4.96628 4.98768 5.08627 5.09663 5.12988 5.19827 5.26671 5.35298 5.44825 5.52211 5.59424 5.62833 5.73753 5.86441 5.89066 5.95913 6.02582 6.06061 6.28524 6.34857 6.42307 6.53775 6.73998 6.89597 6.95005 7.07879 7.20576 7.29333 7.34502 7.49953 7.65518 7.86424 8.15745 8.87205 9.54930 10.59378 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.002110 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.928750 B =13266.615337 C =14703.295606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.160 3.840 11 C -0.237 4.237 12 C -0.051 4.051 13 C -0.216 4.216 14 C 0.178 3.822 15 N -0.721 5.721 16 C 0.514 3.486 17 O -0.542 6.542 18 C -0.100 4.100 19 H 0.103 0.897 20 C -0.100 4.100 21 C -0.041 4.041 22 C -0.239 4.239 23 C 0.057 3.943 24 N -0.298 5.298 25 N -0.468 5.468 26 H 0.439 0.561 27 C 0.092 3.908 28 C -0.050 4.050 29 C -0.054 4.054 30 C -0.195 4.195 31 H 0.272 0.728 32 H 0.128 0.872 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.401 0.599 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.183 0.817 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.113 0.887 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.170 -16.120 10.111 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.105 3.895 11 C -0.257 4.257 12 C -0.070 4.070 13 C -0.217 4.217 14 C 0.056 3.944 15 N -0.372 5.372 16 C 0.299 3.701 17 O -0.419 6.419 18 C -0.122 4.122 19 H 0.121 0.879 20 C -0.137 4.137 21 C -0.079 4.079 22 C -0.250 4.250 23 C -0.129 4.129 24 N -0.120 5.120 25 N -0.176 5.176 26 H 0.283 0.717 27 C -0.038 4.038 28 C -0.089 4.089 29 C -0.073 4.073 30 C -0.215 4.215 31 H 0.082 0.918 32 H 0.146 0.854 33 H 0.126 0.874 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.236 0.764 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.200 0.800 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.131 0.869 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.447 -15.658 10.389 22.539 hybrid contribution 0.026 1.305 -0.270 1.333 sum 12.473 -14.353 10.119 21.540 Atomic orbital electron populations 1.70029 1.06015 1.27934 1.45254 1.25323 0.95867 0.98958 0.96311 0.85696 0.78914 0.79902 0.78839 1.19759 1.20152 1.19150 1.21350 0.91855 0.80707 1.53097 0.88921 1.83981 1.34520 1.11575 1.77422 1.19447 0.90326 0.88063 0.91627 1.21157 0.93778 0.98961 1.11755 1.20629 0.98325 0.91637 0.96400 1.19199 0.93561 0.93591 1.15382 1.19994 0.98502 0.94918 0.80980 1.46407 1.54528 1.26709 1.09584 1.20492 0.78034 0.80882 0.90646 1.90699 1.51604 1.47646 1.51932 1.21338 1.01157 0.96570 0.93100 0.87856 1.21430 1.00495 0.95777 0.96043 1.20026 1.01228 0.94092 0.92560 1.19978 1.14090 0.94417 0.96513 1.23618 0.98568 0.95328 0.95354 1.77519 1.24068 1.02119 1.08301 1.46059 1.51751 1.09534 1.10229 0.71732 1.20790 0.99469 0.91529 0.92055 1.20299 1.00743 0.98081 0.89793 1.20535 0.92772 0.96826 0.97174 1.20226 0.99705 0.90260 1.11262 0.91825 0.85439 0.87448 0.91559 0.91488 0.76434 0.91100 0.90114 0.90623 0.91073 0.80015 0.88933 0.89342 0.86947 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.26 13.67 55.48 0.76 -23.50 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.64 29.55 -169.99 -5.02 14.62 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.39 -10.49 9.49 30.89 0.29 -10.19 16 8 H 0.09 2.26 5.20 -52.49 -0.27 1.99 16 9 O -0.17 -4.68 9.76 0.03 0.00 -4.68 16 10 C 0.16 3.60 6.65 -39.11 -0.26 3.34 16 11 C -0.24 -4.71 9.17 -39.40 -0.36 -5.07 16 12 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 13 C -0.22 -3.22 5.25 -104.58 -0.55 -3.77 16 14 C 0.18 2.26 5.80 -5.19 -0.03 2.23 16 15 N -0.72 -7.70 5.45 -61.47 -0.34 -8.04 16 16 C 0.51 5.67 7.13 -10.98 -0.08 5.59 16 17 O -0.54 -7.97 15.81 5.56 0.09 -7.88 16 18 C -0.10 -0.80 2.50 -91.51 -0.23 -1.03 16 19 H 0.10 0.73 8.11 -51.93 -0.42 0.31 16 20 C -0.10 -0.81 4.65 -26.49 -0.12 -0.93 16 21 C -0.04 -0.28 6.28 -27.63 -0.17 -0.46 16 22 C -0.24 -2.05 5.91 -105.05 -0.62 -2.67 16 23 C 0.06 0.50 12.00 -17.48 -0.21 0.29 16 24 N -0.30 -3.13 12.71 30.54 0.39 -2.74 16 25 N -0.47 -4.06 7.34 33.48 0.25 -3.82 16 26 H 0.44 2.70 8.96 -182.45 -1.64 1.06 16 27 C 0.09 0.77 7.08 -82.33 -0.58 0.19 16 28 C -0.05 -0.35 5.43 -27.62 -0.15 -0.50 16 29 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 30 C -0.20 -3.78 9.99 -39.39 -0.39 -4.18 16 31 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.13 2.56 5.64 -52.48 -0.30 2.26 16 33 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 34 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 36 H 0.40 3.72 8.13 -40.82 -0.33 3.39 16 37 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 38 H 0.08 0.71 7.75 -51.93 -0.40 0.31 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.09 0.67 8.12 -51.93 -0.42 0.25 16 43 H 0.09 0.51 7.89 -51.93 -0.41 0.10 16 44 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 45 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 378.72 15.07 5.71 5.71 Total: -1.00 -32.56 378.72 -9.63 -42.18 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -7.12 Total: 6.79 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -4.33 Total: -18.64 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 1.06 Total: -38.10 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.56 -9.63 -42.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079959097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.151 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds