Wall clock time and date at job start Sat Apr 11 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86793 * 120.00598 * 2 1 4 4 H 1.48508 * 109.47061 * 270.00094 * 3 2 1 5 5 H 1.48501 * 109.47354 * 29.99627 * 3 2 1 6 6 H 1.48500 * 109.47642 * 150.00174 * 3 2 1 7 7 C 1.38659 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99847 * 359.97438 * 7 2 1 9 9 O 1.34826 * 120.00080 * 180.02562 * 7 2 1 10 10 C 1.35755 * 117.00023 * 185.05562 * 9 7 2 11 11 C 1.38897 * 120.06712 * 354.46592 * 10 9 7 12 12 C 1.38082 * 119.93118 * 180.02562 * 11 10 9 13 13 C 1.38317 * 120.06786 * 359.97438 * 12 11 10 14 14 C 1.38284 * 120.13885 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.96650 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47222 * 89.99366 * 15 14 13 17 17 O 1.21272 * 119.99977 * 0.02562 * 16 15 14 18 18 N 1.34770 * 119.99539 * 179.97438 * 16 15 14 19 19 C 1.46501 * 120.00047 * 180.02562 * 18 16 15 20 20 H 1.09006 * 109.46177 * 35.01568 * 19 18 16 21 21 C 1.53108 * 109.46821 * 155.00129 * 19 18 16 22 22 C 1.53369 * 109.49901 * 190.29405 * 21 19 18 23 23 C 1.50827 * 108.38045 * 310.04587 * 22 21 19 24 24 N 1.34323 * 128.03231 * 196.66806 * 23 22 21 25 25 H 0.97002 * 126.09590 * 359.79896 * 24 23 22 26 26 N 1.40298 * 107.81622 * 179.78140 * 24 23 22 27 27 C 1.31074 * 108.26588 * 0.06845 * 26 24 23 28 28 C 1.35743 * 124.11907 * 16.54795 * 23 22 21 29 29 C 1.50840 * 124.11468 * 0.21121 * 28 23 22 30 30 C 1.38123 * 120.06848 * 0.24713 * 14 13 12 31 31 H 0.97005 * 119.99134 * 0.02562 * 1 2 3 32 32 H 1.08003 * 120.03640 * 359.97436 * 11 10 9 33 33 H 1.07997 * 119.96968 * 179.97438 * 12 11 10 34 34 H 1.07999 * 119.93226 * 180.02562 * 13 12 11 35 35 H 1.09001 * 109.46994 * 329.99183 * 15 14 13 36 36 H 1.08998 * 109.46624 * 209.99421 * 15 14 13 37 37 H 0.97003 * 120.00727 * 0.02562 * 18 16 15 38 38 H 1.09000 * 109.46365 * 310.29698 * 21 19 18 39 39 H 1.08995 * 109.46438 * 70.28561 * 21 19 18 40 40 H 1.08999 * 109.68500 * 69.77776 * 22 21 19 41 41 H 1.09007 * 109.67781 * 190.33548 * 22 21 19 42 42 H 1.07999 * 125.95332 * 179.97438 * 27 26 24 43 43 H 1.09003 * 109.68410 * 256.81301 * 29 28 23 44 44 H 1.09000 * 109.68666 * 136.25185 * 29 28 23 45 45 H 1.08000 * 120.03297 * 179.72573 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.4973 2.0463 -1.4002 5 1 1.4473 2.6527 0.7000 6 1 3.5473 1.4400 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1361 0.0014 9 8 3.3571 -1.2010 0.0011 10 6 3.9734 -2.4059 -0.1050 11 6 3.2231 -3.5748 -0.0921 12 6 3.8529 -4.7989 -0.1996 13 6 5.2293 -4.8619 -0.3207 14 6 5.9790 -3.6999 -0.3339 15 6 7.4786 -3.7731 -0.4654 16 6 7.8574 -3.7356 -1.9235 17 8 6.9948 -3.6568 -2.7723 18 7 9.1549 -3.7887 -2.2841 19 6 9.5233 -3.7517 -3.7016 20 1 8.8317 -3.1035 -4.2398 21 6 10.9477 -3.2086 -3.8446 22 6 11.2422 -2.9271 -5.3232 23 6 10.8648 -4.1481 -6.1241 24 7 11.2279 -4.4591 -7.3794 25 1 11.7948 -3.9265 -7.9589 26 7 10.6414 -5.6919 -7.7030 27 6 9.9478 -6.1009 -6.6687 28 6 10.0707 -5.1469 -5.6612 29 6 9.4545 -5.1686 -4.2845 30 6 5.3555 -2.4727 -0.2210 31 1 -0.4849 0.8402 -0.0004 32 1 2.1484 -3.5263 0.0028 33 1 3.2702 -5.7081 -0.1892 34 1 5.7196 -5.8204 -0.4051 35 1 7.8375 -4.7012 -0.0205 36 1 7.9301 -2.9250 0.0493 37 1 9.8449 -3.8513 -1.6053 38 1 11.0435 -2.2854 -3.2730 39 1 11.6568 -3.9451 -3.4668 40 1 10.6549 -2.0722 -5.6582 41 1 12.3040 -2.7171 -5.4524 42 1 9.3798 -7.0175 -6.6085 43 1 10.0084 -5.8559 -3.6451 44 1 8.4144 -5.4873 -4.3528 45 1 5.9419 -1.5658 -0.2269 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089827408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:06 Heat of formation + Delta-G solvation = 2.187559 kcal Electronic energy + Delta-G solvation = -28160.292715 eV Core-core repulsion = 24143.475231 eV Total energy + Delta-G solvation = -4016.817485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.50389 -41.14060 -40.46697 -38.46164 -37.61449 -34.51009 -34.45787 -33.56864 -33.16655 -31.07067 -30.54467 -29.68187 -27.98421 -27.12398 -24.66240 -23.48732 -23.18272 -22.78163 -22.13672 -21.26769 -19.86729 -19.62026 -18.88806 -18.49173 -17.78289 -17.06617 -16.82362 -16.74037 -16.03211 -15.94290 -15.69553 -15.59440 -15.32725 -15.11239 -14.79111 -14.66700 -14.50420 -14.34939 -14.13570 -14.01307 -13.88521 -13.81825 -13.05419 -13.02127 -12.80831 -12.69154 -12.48885 -12.40939 -12.30232 -11.90698 -11.81583 -11.77304 -11.69761 -11.29827 -10.92909 -10.80387 -10.50002 -9.99481 -9.63138 -9.27742 -9.03703 -8.49586 -6.22221 0.52124 0.72975 0.88199 1.29767 1.35261 1.51210 1.75764 1.80473 1.93510 2.28188 2.29175 2.80346 3.05916 3.19579 3.62580 3.76282 3.82722 3.89448 3.97098 4.10636 4.15137 4.24757 4.33841 4.45349 4.49427 4.55794 4.57454 4.57949 4.63041 4.70594 4.75605 4.84767 4.96682 5.00129 5.02490 5.19009 5.27174 5.30338 5.31528 5.41232 5.61411 5.67997 5.68692 5.75835 5.78531 5.93440 6.28052 6.40525 6.67344 6.72724 6.84749 7.45427 7.60063 8.62360 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015281 B = 0.002184 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.874895 B =12817.678765 C =13394.607411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.972 3.028 4 H -0.269 1.269 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.399 4.399 8 H 0.078 0.922 9 O -0.247 6.247 10 C 0.117 3.883 11 C -0.242 4.242 12 C -0.080 4.080 13 C -0.171 4.171 14 C -0.026 4.026 15 C -0.090 4.090 16 C 0.514 3.486 17 O -0.579 6.579 18 N -0.710 5.710 19 C 0.146 3.854 20 H 0.057 0.943 21 C -0.111 4.111 22 C -0.052 4.052 23 C 0.092 3.908 24 N -0.466 5.466 25 H 0.449 0.551 26 N -0.333 5.333 27 C 0.047 3.953 28 C -0.256 4.256 29 C -0.042 4.042 30 C -0.181 4.181 31 H 0.284 0.716 32 H 0.105 0.895 33 H 0.138 0.862 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.129 0.871 37 H 0.421 0.579 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.194 0.806 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.888 -9.115 -5.999 33.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.794 3.206 4 H -0.194 1.194 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.475 4.475 8 H 0.096 0.904 9 O -0.155 6.155 10 C 0.068 3.932 11 C -0.262 4.262 12 C -0.098 4.098 13 C -0.189 4.189 14 C -0.027 4.027 15 C -0.130 4.130 16 C 0.301 3.699 17 O -0.458 6.458 18 N -0.364 5.364 19 C 0.040 3.960 20 H 0.075 0.925 21 C -0.149 4.149 22 C -0.092 4.092 23 C -0.039 4.039 24 N -0.175 5.175 25 H 0.295 0.705 26 N -0.156 5.156 27 C -0.137 4.137 28 C -0.267 4.267 29 C -0.081 4.081 30 C -0.200 4.200 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.156 0.844 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.147 0.853 37 H 0.259 0.741 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.135 0.865 42 H 0.211 0.789 43 H 0.105 0.895 44 H 0.067 0.933 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 31.539 -9.009 -7.777 33.710 hybrid contribution -0.879 0.799 0.387 1.249 sum 30.660 -8.210 -7.390 32.589 Atomic orbital electron populations 1.69742 1.06899 1.29544 1.50429 1.25315 0.95945 1.02232 0.95598 0.85197 0.78916 0.77304 0.79149 1.19444 1.18876 1.18429 1.20707 0.78210 0.96081 1.52544 0.90414 1.83499 1.21136 1.27406 1.83437 1.19620 0.93212 0.85099 0.95230 1.21313 1.00088 0.93542 1.11229 1.21110 0.95609 0.96196 0.96866 1.21025 0.93168 0.98593 1.06135 1.19267 0.95664 0.91422 0.96350 1.20725 0.90994 1.08303 0.92939 1.20938 0.82626 0.74850 0.91448 1.90779 1.50656 1.50130 1.54212 1.45823 1.07051 1.75083 1.08408 1.20945 0.97308 0.96123 0.81574 0.92512 1.21785 0.94052 1.03494 0.95612 1.20466 1.04149 0.91753 0.92784 1.21424 0.97342 0.98462 0.86679 1.46057 1.41583 1.17714 1.12107 0.70474 1.77449 1.16694 0.97405 1.24052 1.23962 0.98308 1.00802 0.90676 1.20029 1.09228 0.97998 0.99487 1.20250 0.99347 0.97364 0.91187 1.20299 0.90517 0.99096 1.10127 0.90605 0.87726 0.84393 0.83377 0.83826 0.85293 0.74123 0.88121 0.88792 0.88937 0.86538 0.78870 0.89457 0.93260 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.96 21.62 0.30 -56.74 16 2 C 0.01 0.42 5.49 84.83 0.47 0.88 16 3 Si 0.97 46.94 28.62 68.60 1.96 48.90 16 4 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.40 -24.61 9.95 67.92 0.68 -23.94 16 8 H 0.08 5.04 5.44 -2.91 -0.02 5.03 16 9 O -0.25 -14.10 8.59 -22.75 -0.20 -14.30 16 10 C 0.12 5.82 6.65 22.58 0.15 5.97 16 11 C -0.24 -11.42 9.17 22.39 0.21 -11.22 16 12 C -0.08 -2.95 10.04 22.25 0.22 -2.73 16 13 C -0.17 -5.34 9.70 22.30 0.22 -5.12 16 14 C -0.03 -0.83 4.37 -19.88 -0.09 -0.91 16 15 C -0.09 -1.66 5.83 29.10 0.17 -1.49 16 16 C 0.51 11.52 7.79 87.66 0.68 12.20 16 17 O -0.58 -20.44 15.70 -3.00 -0.05 -20.49 16 18 N -0.71 -9.19 5.08 -441.78 -2.24 -11.43 16 19 C 0.15 2.13 2.42 45.15 0.11 2.24 16 20 H 0.06 1.27 7.55 -2.38 -0.02 1.25 16 21 C -0.11 -0.70 5.37 30.75 0.17 -0.53 16 22 C -0.05 -0.35 6.30 30.01 0.19 -0.16 16 23 C 0.09 1.29 7.08 41.64 0.29 1.59 16 24 N -0.47 -6.95 7.34 -47.99 -0.35 -7.30 16 25 H 0.45 3.74 8.96 -213.19 -1.91 1.83 16 26 N -0.33 -7.05 12.71 -57.28 -0.73 -7.78 16 27 C 0.05 0.93 12.00 85.06 1.02 1.95 16 28 C -0.26 -4.56 5.91 -20.14 -0.12 -4.68 16 29 C -0.04 -0.70 5.86 30.02 0.18 -0.52 16 30 C -0.18 -7.30 9.64 22.39 0.22 -7.08 16 31 H 0.28 16.03 8.31 -92.70 -0.77 15.26 16 32 H 0.10 5.40 5.64 -2.91 -0.02 5.38 16 33 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 34 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 35 H 0.14 1.46 8.09 -2.39 -0.02 1.44 16 36 H 0.13 1.70 8.08 -2.39 -0.02 1.68 16 37 H 0.42 1.85 8.60 -92.71 -0.80 1.05 16 38 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.09 0.31 8.11 -2.39 -0.02 0.29 16 40 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.12 0.14 8.14 -2.38 -0.02 0.12 16 42 H 0.19 2.98 8.06 -2.91 -0.02 2.96 16 43 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -87.57 378.61 1.79 -85.77 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -1.66 Total: 16.92 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: 4.75 Total: -33.56 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -3.02 Total: -83.25 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.24 Total: -34.79 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.96 Total: 48.90 kcal Total: -87.57 1.79 -85.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089827408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.960 kcal (2) G-P(sol) polarization free energy of solvation -87.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds