Wall clock time and date at job start Sat Apr 11 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00043 * 2 1 4 4 H 1.48500 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46947 * 300.00133 * 3 2 1 6 6 H 1.48500 * 109.46810 * 59.99757 * 3 2 1 7 7 C 1.37882 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00265 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99321 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46713 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47201 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.47028 * 179.97438 * 11 10 9 13 13 O 1.42101 * 110.54243 * 68.37908 * 12 11 10 14 14 O 1.42099 * 110.54325 * 291.62754 * 12 11 10 15 15 N 1.65602 * 104.44802 * 180.02562 * 12 11 10 16 16 C 1.46497 * 120.00502 * 65.00125 * 15 12 11 17 17 H 1.09002 * 109.47031 * 24.99844 * 16 15 12 18 18 C 1.52992 * 109.47408 * 144.99698 * 16 15 12 19 19 C 1.52997 * 109.47482 * 295.00294 * 18 16 15 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 18 16 21 21 O 1.42903 * 109.46726 * 180.02562 * 20 19 18 22 22 C 1.50699 * 109.47154 * 265.00333 * 16 15 12 23 23 C 1.38236 * 119.99912 * 319.72339 * 22 16 15 24 24 C 1.38233 * 120.00045 * 179.78941 * 23 22 16 25 25 C 1.38233 * 119.99944 * 0.44003 * 24 23 22 26 26 C 1.38233 * 120.00018 * 359.81457 * 25 24 23 27 27 C 1.38232 * 120.00107 * 359.97438 * 26 25 24 28 28 H 0.97006 * 120.00408 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47177 * 60.00109 * 9 7 2 30 30 H 1.08995 * 109.47401 * 299.99117 * 9 7 2 31 31 H 1.09001 * 109.46988 * 59.99600 * 10 9 7 32 32 H 1.09006 * 109.47094 * 300.00382 * 10 9 7 33 33 H 1.09003 * 109.46796 * 60.00311 * 11 10 9 34 34 H 1.08998 * 109.47377 * 300.00407 * 11 10 9 35 35 H 0.96999 * 119.99545 * 245.00264 * 15 12 11 36 36 H 1.09002 * 109.47103 * 175.00047 * 18 16 15 37 37 H 1.08998 * 109.46862 * 55.00859 * 18 16 15 38 38 H 1.09002 * 109.47153 * 59.99783 * 19 18 16 39 39 H 1.09001 * 109.46832 * 299.99974 * 19 18 16 40 40 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 41 41 H 1.08992 * 109.47399 * 59.99823 * 20 19 18 42 42 H 0.96700 * 113.99509 * 179.97438 * 21 20 19 43 43 H 1.08006 * 119.99710 * 359.97438 * 23 22 16 44 44 H 1.08005 * 119.99852 * 180.27043 * 24 23 22 45 45 H 1.08007 * 119.99899 * 179.83549 * 25 24 23 46 46 H 1.08003 * 120.00170 * 180.02562 * 26 25 24 47 47 H 1.07994 * 120.00242 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 16 2.6590 -6.3659 0.0004 13 8 3.3566 -6.4262 1.2369 14 8 3.3549 -6.4263 -1.2370 15 7 1.7086 -7.7220 0.0005 16 6 0.8487 -8.0140 -1.1490 17 1 1.2592 -7.5387 -2.0399 18 6 0.7808 -9.5273 -1.3638 19 6 2.1655 -10.0502 -1.7511 20 6 2.0973 -11.5634 -1.9665 21 8 3.3908 -12.0518 -2.3276 22 6 -0.5365 -7.4809 -0.8884 23 6 -1.0996 -7.6044 0.3680 24 6 -2.3685 -7.1115 0.6083 25 6 -3.0780 -6.5032 -0.4103 26 6 -2.5170 -6.3843 -1.6681 27 6 -1.2464 -6.8733 -1.9072 28 1 -0.4851 0.8401 -0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6240 -2.5568 0.8903 31 1 2.8719 -3.6043 0.8905 32 1 2.8719 -3.6043 -0.8895 33 1 0.8533 -5.0451 -0.8886 34 1 0.8538 -5.0446 0.8913 35 1 1.7214 -8.3231 0.7617 36 1 0.0722 -9.7496 -2.1618 37 1 0.4542 -10.0106 -0.4431 38 1 2.8740 -9.8279 -0.9531 39 1 2.4919 -9.5668 -2.6719 40 1 1.7707 -12.0471 -1.0459 41 1 1.3889 -11.7853 -2.7645 42 1 3.4225 -13.0063 -2.4795 43 1 -0.5469 -8.0835 1.1627 44 1 -2.8067 -7.2042 1.5911 45 1 -4.0705 -6.1204 -0.2232 46 1 -3.0711 -5.9086 -2.4638 47 1 -0.8079 -6.7801 -2.8897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121395660.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:42 Heat of formation + Delta-G solvation = -125.394043 kcal Electronic energy + Delta-G solvation = -27989.615332 eV Core-core repulsion = 24070.416694 eV Total energy + Delta-G solvation = -3919.198638 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.77058 -37.64436 -36.89548 -36.37033 -35.71192 -34.63567 -32.67891 -32.16468 -31.19250 -30.81950 -27.79146 -27.48914 -24.04094 -23.66746 -22.72677 -21.58390 -21.00880 -20.61485 -19.23705 -17.78708 -17.44547 -17.19402 -16.61561 -16.27978 -15.81376 -15.74321 -15.37782 -15.20740 -14.70476 -14.46533 -14.27295 -14.06711 -13.75888 -13.45713 -13.37810 -13.05650 -12.56522 -12.33873 -12.23427 -12.11032 -11.93162 -11.80173 -11.73646 -11.71552 -11.39791 -11.26175 -11.19190 -11.15664 -11.05357 -10.92414 -10.80818 -10.40059 -10.27087 -9.92763 -9.80278 -9.30970 -9.05567 -8.99574 -8.84851 -8.39463 -6.04091 -4.06859 0.49369 1.20444 1.32256 2.84844 3.30137 3.37623 3.42829 3.63376 3.85861 3.97576 4.38590 4.43853 4.55170 4.60190 4.64145 4.76985 4.90800 4.94544 4.99800 5.02966 5.05840 5.21836 5.23599 5.31505 5.33122 5.35237 5.40420 5.48895 5.52708 5.68028 5.86657 5.91127 5.94434 5.99368 6.06435 6.29953 6.36985 6.45175 6.48583 6.49673 6.87400 6.89783 6.91347 7.31540 7.60176 7.70148 7.94380 8.35058 8.99679 9.57686 11.07059 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011806 B = 0.003163 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.124158 B = 8850.384528 C =10479.054057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.033 3.967 10 C -0.105 4.105 11 C -0.604 4.604 12 S 2.596 3.404 13 O -0.964 6.964 14 O -0.960 6.960 15 N -1.116 6.116 16 C 0.192 3.808 17 H 0.104 0.896 18 C -0.110 4.110 19 C -0.125 4.125 20 C 0.076 3.924 21 O -0.574 6.574 22 C -0.113 4.113 23 C -0.103 4.103 24 C -0.119 4.119 25 C -0.115 4.115 26 C -0.114 4.114 27 C -0.110 4.110 28 H 0.260 0.740 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.414 0.586 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.378 0.622 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.628 -24.373 -2.820 25.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.144 4.144 11 C -0.736 4.736 12 S 2.693 3.307 13 O -0.954 6.954 14 O -0.950 6.950 15 N -0.872 5.872 16 C 0.085 3.915 17 H 0.122 0.878 18 C -0.149 4.149 19 C -0.163 4.163 20 C -0.002 4.002 21 O -0.379 6.379 22 C -0.115 4.115 23 C -0.121 4.121 24 C -0.138 4.138 25 C -0.133 4.133 26 C -0.132 4.132 27 C -0.128 4.128 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.248 0.752 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.224 0.776 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.640 -23.537 -2.918 24.167 hybrid contribution -0.684 0.415 0.363 0.879 sum -5.324 -23.122 -2.554 23.864 Atomic orbital electron populations 1.69970 1.06067 1.26586 1.50769 1.25017 0.94876 0.99330 0.95158 0.86517 0.80234 0.83585 0.77593 1.19593 1.20955 1.20969 1.21303 0.93278 0.90911 1.50802 0.92349 1.19036 0.93460 0.90372 0.97676 1.21496 0.99339 0.91783 1.01831 1.30535 1.16109 1.15619 1.11320 1.05424 0.75650 0.75349 0.74306 1.93577 1.70770 1.85891 1.45181 1.93573 1.70240 1.85692 1.45500 1.55820 1.61345 1.42533 1.27491 1.19674 0.86519 0.96532 0.88823 0.87833 1.21698 0.97158 0.93343 1.02717 1.21557 0.97465 0.93580 1.03657 1.22200 0.84447 0.95252 0.98264 1.86524 1.31322 1.27823 1.92256 1.20293 0.96357 1.00251 0.94552 1.20918 0.95157 0.99667 0.96375 1.21161 0.94894 0.98571 0.99125 1.21211 1.00089 0.98668 0.93305 1.21159 0.95518 0.99218 0.97312 1.21062 0.94909 0.97967 0.98897 0.93008 0.96168 0.96196 0.91704 0.91656 0.85559 0.85388 0.75170 0.90174 0.90851 0.90609 0.90529 0.93811 0.93722 0.77580 0.86087 0.86083 0.86099 0.85849 0.85691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.84 4.97 -27.88 -0.14 0.71 16 10 C -0.11 -2.18 5.16 -26.73 -0.14 -2.32 16 11 C -0.60 -9.73 5.73 37.16 0.21 -9.52 16 12 S 2.60 39.10 5.44 -107.50 -0.58 38.51 16 13 O -0.96 -17.29 18.08 -57.54 -1.04 -18.33 16 14 O -0.96 -17.05 17.39 -57.54 -1.00 -18.05 16 15 N -1.12 -11.77 4.12 -5.89 -0.02 -11.79 16 16 C 0.19 1.82 2.40 -69.09 -0.17 1.65 16 17 H 0.10 1.04 7.34 -51.93 -0.38 0.66 16 18 C -0.11 -0.81 4.79 -26.74 -0.13 -0.94 16 19 C -0.12 -1.13 5.47 -26.73 -0.15 -1.27 16 20 C 0.08 0.57 7.05 37.16 0.26 0.83 16 21 O -0.57 -5.18 13.66 -35.23 -0.48 -5.66 16 22 C -0.11 -1.11 4.21 -104.62 -0.44 -1.55 16 23 C -0.10 -0.99 9.32 -39.58 -0.37 -1.36 16 24 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 25 C -0.11 -1.18 10.05 -39.58 -0.40 -1.57 16 26 C -0.11 -1.18 10.05 -39.59 -0.40 -1.58 16 27 C -0.11 -1.12 9.67 -39.58 -0.38 -1.50 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.13 1.89 7.75 -51.92 -0.40 1.49 16 34 H 0.13 1.91 8.14 -51.93 -0.42 1.49 16 35 H 0.41 3.45 8.60 -34.47 -0.30 3.16 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.79 7.75 -51.93 -0.40 0.38 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.38 1.56 9.12 45.56 0.42 1.97 16 43 H 0.12 0.96 7.58 -52.48 -0.40 0.56 16 44 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 45 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 46 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 47 H 0.13 1.09 8.04 -52.49 -0.42 0.66 16 LS Contribution 404.12 15.07 6.09 6.09 Total: -1.00 -37.20 404.12 -11.29 -48.49 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.92 Total: 3.69 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: -3.04 Total: -33.71 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.71 Total: -37.76 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -2.52 Total: -42.05 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 39.10 SS G_CDS: -0.58 Total: 38.51 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.20 -11.29 -48.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121395660.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.903 kcal (2) G-P(sol) polarization free energy of solvation -37.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds