Wall clock time and date at job start Sat Apr 11 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00043 * 2 1 4 4 H 1.48500 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46947 * 300.00133 * 3 2 1 6 6 H 1.48500 * 109.46810 * 59.99757 * 3 2 1 7 7 C 1.37882 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00265 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99321 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46713 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47201 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.47028 * 179.97438 * 11 10 9 13 13 O 1.42101 * 110.54243 * 68.37908 * 12 11 10 14 14 O 1.42099 * 110.54325 * 291.62754 * 12 11 10 15 15 N 1.65602 * 104.44802 * 180.02562 * 12 11 10 16 16 C 1.46497 * 120.00502 * 65.00125 * 15 12 11 17 17 H 1.09002 * 109.47031 * 24.99844 * 16 15 12 18 18 C 1.52992 * 109.47408 * 144.99698 * 16 15 12 19 19 C 1.52997 * 109.47482 * 295.00294 * 18 16 15 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 18 16 21 21 O 1.42903 * 109.46726 * 180.02562 * 20 19 18 22 22 C 1.50699 * 109.47154 * 265.00333 * 16 15 12 23 23 C 1.38236 * 119.99912 * 319.72339 * 22 16 15 24 24 C 1.38233 * 120.00045 * 179.78941 * 23 22 16 25 25 C 1.38233 * 119.99944 * 0.44003 * 24 23 22 26 26 C 1.38233 * 120.00018 * 359.81457 * 25 24 23 27 27 C 1.38232 * 120.00107 * 359.97438 * 26 25 24 28 28 H 0.97006 * 120.00408 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47177 * 60.00109 * 9 7 2 30 30 H 1.08995 * 109.47401 * 299.99117 * 9 7 2 31 31 H 1.09001 * 109.46988 * 59.99600 * 10 9 7 32 32 H 1.09006 * 109.47094 * 300.00382 * 10 9 7 33 33 H 1.09003 * 109.46796 * 60.00311 * 11 10 9 34 34 H 1.08998 * 109.47377 * 300.00407 * 11 10 9 35 35 H 0.96999 * 119.99545 * 245.00264 * 15 12 11 36 36 H 1.09002 * 109.47103 * 175.00047 * 18 16 15 37 37 H 1.08998 * 109.46862 * 55.00859 * 18 16 15 38 38 H 1.09002 * 109.47153 * 59.99783 * 19 18 16 39 39 H 1.09001 * 109.46832 * 299.99974 * 19 18 16 40 40 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 41 41 H 1.08992 * 109.47399 * 59.99823 * 20 19 18 42 42 H 0.96700 * 113.99509 * 179.97438 * 21 20 19 43 43 H 1.08006 * 119.99710 * 359.97438 * 23 22 16 44 44 H 1.08005 * 119.99852 * 180.27043 * 24 23 22 45 45 H 1.08007 * 119.99899 * 179.83549 * 25 24 23 46 46 H 1.08003 * 120.00170 * 180.02562 * 26 25 24 47 47 H 1.07994 * 120.00242 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 16 2.6590 -6.3659 0.0004 13 8 3.3566 -6.4262 1.2369 14 8 3.3549 -6.4263 -1.2370 15 7 1.7086 -7.7220 0.0005 16 6 0.8487 -8.0140 -1.1490 17 1 1.2592 -7.5387 -2.0399 18 6 0.7808 -9.5273 -1.3638 19 6 2.1655 -10.0502 -1.7511 20 6 2.0973 -11.5634 -1.9665 21 8 3.3908 -12.0518 -2.3276 22 6 -0.5365 -7.4809 -0.8884 23 6 -1.0996 -7.6044 0.3680 24 6 -2.3685 -7.1115 0.6083 25 6 -3.0780 -6.5032 -0.4103 26 6 -2.5170 -6.3843 -1.6681 27 6 -1.2464 -6.8733 -1.9072 28 1 -0.4851 0.8401 -0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6240 -2.5568 0.8903 31 1 2.8719 -3.6043 0.8905 32 1 2.8719 -3.6043 -0.8895 33 1 0.8533 -5.0451 -0.8886 34 1 0.8538 -5.0446 0.8913 35 1 1.7214 -8.3231 0.7617 36 1 0.0722 -9.7496 -2.1618 37 1 0.4542 -10.0106 -0.4431 38 1 2.8740 -9.8279 -0.9531 39 1 2.4919 -9.5668 -2.6719 40 1 1.7707 -12.0471 -1.0459 41 1 1.3889 -11.7853 -2.7645 42 1 3.4225 -13.0063 -2.4795 43 1 -0.5469 -8.0835 1.1627 44 1 -2.8067 -7.2042 1.5911 45 1 -4.0705 -6.1204 -0.2232 46 1 -3.0711 -5.9086 -2.4638 47 1 -0.8079 -6.7801 -2.8897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121395660.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:41 Heat of formation + Delta-G solvation = -152.599513 kcal Electronic energy + Delta-G solvation = -27990.795049 eV Core-core repulsion = 24070.416694 eV Total energy + Delta-G solvation = -3920.378356 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.52497 -38.35970 -38.14264 -37.18729 -37.02502 -36.48047 -34.17916 -33.41456 -31.97390 -31.59441 -29.66504 -28.20124 -25.63421 -24.70027 -23.48231 -22.46107 -22.20278 -21.76346 -20.42685 -18.82013 -18.58554 -18.24461 -17.97181 -17.29361 -17.14345 -16.64614 -16.47177 -16.23123 -16.14148 -15.70270 -15.46982 -14.87279 -14.53766 -14.46380 -14.16972 -14.15172 -14.05357 -13.79204 -13.53035 -13.30619 -13.22839 -13.11554 -13.00125 -12.78718 -12.78686 -12.62143 -12.54825 -12.23699 -12.07942 -11.92201 -11.84163 -11.78288 -11.73420 -11.38211 -11.13918 -10.82804 -10.58860 -10.49178 -9.75425 -9.61453 -8.23214 -6.34312 -0.76669 0.43511 0.56487 1.38744 1.39354 1.52804 1.75080 2.39028 2.71063 2.89294 3.10078 3.19161 3.29754 3.72344 3.80432 3.88343 3.92139 4.00521 4.11388 4.18609 4.24803 4.35556 4.36735 4.41540 4.46909 4.61216 4.64703 4.69336 4.69782 4.81599 4.90414 4.94551 4.97653 5.05198 5.13137 5.21417 5.30558 5.40086 5.44402 5.61521 5.62107 5.69995 5.72791 5.78599 6.10554 6.15975 6.18877 6.81185 6.95295 7.34961 8.88395 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011806 B = 0.003163 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.124158 B = 8850.384528 C =10479.054057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.552 4.552 8 H 0.059 0.941 9 C 0.036 3.964 10 C -0.105 4.105 11 C -0.605 4.605 12 S 2.627 3.373 13 O -0.990 6.990 14 O -0.986 6.986 15 N -1.098 6.098 16 C 0.189 3.811 17 H 0.097 0.903 18 C -0.100 4.100 19 C -0.129 4.129 20 C 0.075 3.925 21 O -0.603 6.603 22 C -0.115 4.115 23 C -0.109 4.109 24 C -0.130 4.130 25 C -0.129 4.129 26 C -0.130 4.130 27 C -0.123 4.123 28 H 0.265 0.735 29 H 0.001 0.999 30 H 0.000 1.000 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.428 0.572 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.397 0.603 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.131 0.869 46 H 0.131 0.869 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.749 -25.542 -2.587 26.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.590 4.590 8 H 0.078 0.922 9 C -0.002 4.002 10 C -0.144 4.144 11 C -0.735 4.735 12 S 2.721 3.279 13 O -0.981 6.981 14 O -0.976 6.976 15 N -0.858 5.858 16 C 0.082 3.918 17 H 0.115 0.885 18 C -0.139 4.139 19 C -0.167 4.167 20 C -0.003 4.003 21 O -0.411 6.411 22 C -0.117 4.117 23 C -0.127 4.127 24 C -0.148 4.148 25 C -0.147 4.147 26 C -0.148 4.148 27 C -0.141 4.141 28 H 0.074 0.926 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.266 0.734 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.246 0.754 43 H 0.157 0.843 44 H 0.154 0.846 45 H 0.149 0.851 46 H 0.149 0.851 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.761 -24.721 -2.677 25.317 hybrid contribution -0.705 0.711 0.270 1.037 sum -5.466 -24.009 -2.407 24.741 Atomic orbital electron populations 1.70080 1.07607 1.27796 1.51369 1.25929 0.95815 1.03190 0.94561 0.85436 0.79080 0.78852 0.77942 1.18810 1.20146 1.20189 1.21759 0.93695 0.92493 1.51011 0.92227 1.18900 0.93843 0.91766 0.95684 1.21309 0.98629 0.92528 1.01947 1.30501 1.16435 1.14017 1.12559 1.04304 0.75152 0.75395 0.73001 1.93536 1.71828 1.86427 1.46284 1.93542 1.71180 1.86199 1.46657 1.55379 1.60993 1.40860 1.28607 1.19839 0.85931 0.98227 0.87835 0.88512 1.21656 0.96577 0.91380 1.04271 1.21579 0.97925 0.95027 1.02122 1.22261 0.84234 0.94049 0.99719 1.86468 1.32393 1.29828 1.92450 1.20308 0.96291 1.00346 0.94714 1.21179 0.95255 0.99518 0.96731 1.21441 0.95165 0.98379 0.99794 1.21474 1.00834 0.98895 0.93503 1.21390 0.95937 0.99612 0.97850 1.21288 0.95083 0.98075 0.99677 0.92643 0.98079 0.98151 0.91650 0.91592 0.84527 0.84124 0.73420 0.88486 0.88889 0.92319 0.92407 0.92086 0.92090 0.75377 0.84253 0.84560 0.85089 0.85062 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.04 13.29 21.45 0.28 -55.76 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.55 -31.82 9.11 25.60 0.23 -31.58 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.04 1.91 4.97 29.85 0.15 2.06 16 10 C -0.10 -4.41 5.16 30.59 0.16 -4.25 16 11 C -0.60 -19.27 5.73 71.98 0.41 -18.85 16 12 S 2.63 77.12 5.44 -56.49 -0.31 76.81 16 13 O -0.99 -34.72 18.08 -127.65 -2.31 -37.03 16 14 O -0.99 -34.66 17.39 -127.65 -2.22 -36.88 16 15 N -1.10 -21.37 4.12 -172.54 -0.71 -22.08 16 16 C 0.19 3.26 2.40 44.24 0.11 3.36 16 17 H 0.10 1.85 7.34 -2.39 -0.02 1.83 16 18 C -0.10 -1.22 4.79 30.59 0.15 -1.07 16 19 C -0.13 -2.13 5.47 30.59 0.17 -1.97 16 20 C 0.07 0.96 7.05 71.98 0.51 1.46 16 21 O -0.60 -10.06 13.66 -148.98 -2.04 -12.09 16 22 C -0.11 -2.08 4.21 -19.87 -0.08 -2.16 16 23 C -0.11 -1.88 9.32 22.27 0.21 -1.67 16 24 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 25 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 26 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 27 C -0.12 -2.39 9.67 22.27 0.22 -2.18 16 28 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 29 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 33 H 0.14 4.05 7.75 -2.39 -0.02 4.03 16 34 H 0.14 4.09 8.14 -2.39 -0.02 4.07 16 35 H 0.43 6.15 8.60 -96.75 -0.83 5.32 16 36 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 1.16 7.75 -2.39 -0.02 1.14 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.40 2.66 9.12 -74.06 -0.68 1.98 16 43 H 0.14 1.81 7.58 -2.91 -0.02 1.79 16 44 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 45 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 46 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 47 H 0.13 2.24 8.04 -2.91 -0.02 2.22 16 Total: -1.00 -79.94 404.12 -2.46 -82.40 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -0.54 Total: 21.10 kcal Atomic # 6 Polarization: -66.43 SS G_CDS: 3.35 Total: -63.07 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -0.43 Total: -77.84 kcal Atomic # 8 Polarization: -79.44 SS G_CDS: -6.56 Total: -86.01 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 77.12 SS G_CDS: -0.31 Total: 76.81 kcal Total: -79.94 -2.46 -82.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121395660.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.200 kcal (2) G-P(sol) polarization free energy of solvation -79.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds