Wall clock time and date at job start Sat Apr 11 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35241 * 107.86079 * 179.87198 * 11 10 9 13 13 C 1.40409 * 107.86602 * 0.39163 * 12 11 10 14 14 N 1.40159 * 125.97033 * 179.73843 * 13 12 11 15 15 C 1.34777 * 119.99983 * 0.02562 * 14 13 12 16 16 O 1.21290 * 120.00252 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99736 * 179.97438 * 15 14 13 18 18 O 1.42898 * 109.47403 * 179.97438 * 17 15 14 19 19 C 1.42894 * 114.00487 * 180.02562 * 18 17 15 20 20 C 1.50701 * 109.47505 * 180.02562 * 19 18 17 21 21 C 1.32559 * 120.00318 * 134.99616 * 20 19 18 22 22 C 1.47818 * 120.00365 * 180.02562 * 21 20 19 23 23 C 1.39536 * 120.13769 * 359.72755 * 22 21 20 24 24 C 1.37973 * 119.85851 * 179.67671 * 23 22 21 25 25 C 1.38349 * 120.13569 * 0.62189 * 24 23 22 26 26 C 1.38341 * 120.28910 * 359.67346 * 25 24 23 27 27 C 1.37973 * 120.13958 * 0.02562 * 26 25 24 28 28 N 1.31219 * 108.05249 * 359.75456 * 13 12 11 29 29 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 31 31 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 32 32 H 1.08003 * 126.06884 * 359.97438 * 11 10 9 33 33 H 1.08002 * 126.06490 * 180.12781 * 12 11 10 34 34 H 0.97003 * 119.99851 * 179.97438 * 14 13 12 35 35 H 1.09001 * 109.47309 * 299.99796 * 17 15 14 36 36 H 1.09006 * 109.47462 * 59.99731 * 17 15 14 37 37 H 1.09000 * 109.47144 * 299.99530 * 19 18 17 38 38 H 1.08999 * 109.47476 * 60.00087 * 19 18 17 39 39 H 1.08004 * 119.99671 * 315.00152 * 20 19 18 40 40 H 1.08004 * 120.00011 * 0.02562 * 21 20 19 41 41 H 1.08009 * 120.07216 * 359.97438 * 23 22 21 42 42 H 1.07992 * 119.93613 * 180.31810 * 24 23 22 43 43 H 1.07997 * 119.85470 * 179.69945 * 25 24 23 44 44 H 1.07994 * 119.92994 * 180.02562 * 26 25 24 45 45 H 1.08006 * 120.07356 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2631 -5.4436 0.5306 13 6 3.8671 -4.9129 -0.6205 14 7 4.9610 -5.4617 -1.3037 15 6 5.5273 -6.6026 -0.8631 16 8 5.0907 -7.1542 0.1250 17 6 6.7030 -7.1928 -1.5980 18 8 7.1219 -8.3913 -0.9421 19 6 8.2376 -9.0337 -1.5621 20 6 8.5914 -10.2799 -0.7920 21 6 8.8452 -11.4090 -1.4386 22 6 9.1917 -12.6314 -0.6832 23 6 9.2581 -12.5988 0.7102 24 6 9.5755 -13.7449 1.4098 25 6 9.8402 -14.9215 0.7319 26 6 9.7821 -14.9591 -0.6498 27 6 9.4598 -13.8214 -1.3607 28 7 3.2287 -3.8133 -0.9445 29 1 -0.4850 -0.8400 0.0004 30 1 0.6281 -2.5591 0.8866 31 1 0.6207 -2.5548 -0.8933 32 1 1.5913 -4.7503 1.7305 33 1 3.5589 -6.3457 1.0455 34 1 5.3099 -5.0207 -2.0941 35 1 6.4128 -7.4219 -2.6234 36 1 7.5245 -6.4764 -1.6044 37 1 7.9795 -9.3014 -2.5867 38 1 9.0906 -8.3552 -1.5676 39 1 8.6382 -10.2531 0.2866 40 1 8.7987 -11.4357 -2.5173 41 1 9.0567 -11.6795 1.2402 42 1 9.6222 -13.7223 2.4884 43 1 10.0930 -15.8147 1.2839 44 1 9.9894 -15.8808 -1.1729 45 1 9.4143 -13.8520 -2.4394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155392003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:55 Heat of formation + Delta-G solvation = 45.547326 kcal Electronic energy + Delta-G solvation = -26370.368569 eV Core-core repulsion = 22355.431305 eV Total energy + Delta-G solvation = -4014.937264 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.78926 -39.65613 -39.47002 -37.95644 -35.02271 -34.81269 -33.69517 -31.39989 -31.21561 -30.75626 -29.42407 -28.50837 -26.30702 -25.72078 -23.33651 -23.13977 -22.33685 -21.76462 -20.52182 -19.91306 -19.54780 -17.74843 -17.21010 -17.18916 -17.04215 -16.62366 -16.18916 -15.84592 -15.32728 -15.19776 -14.85230 -14.71684 -14.09246 -14.01726 -13.80523 -13.75070 -13.44815 -13.36577 -13.11575 -12.79338 -12.60193 -12.44594 -12.20526 -11.84478 -11.78962 -11.49772 -11.23805 -11.17416 -10.82615 -10.72904 -10.49115 -10.18931 -10.08770 -10.07227 -9.61774 -9.35229 -9.02041 -8.59292 -8.53851 -8.23754 -7.55759 -6.59625 -4.33793 0.47591 1.01082 1.97140 2.22024 2.44780 2.81884 3.35756 3.39133 3.40535 3.54284 3.57004 3.61272 3.87372 4.33545 4.37080 4.39572 4.52612 4.56792 4.64864 4.73050 4.77636 4.82398 4.90568 4.95344 5.02457 5.11309 5.14267 5.19014 5.43255 5.54918 5.61982 5.68155 5.85819 5.98735 6.11828 6.13894 6.16102 6.35470 6.38690 6.44958 6.56654 6.58348 6.70543 6.73662 7.28862 7.45089 7.68350 7.81037 8.16339 8.32964 8.51230 8.60228 9.34576 10.78047 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.031496 B = 0.001359 C = 0.001337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.798791 B =20593.371525 C =20942.692050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.608 4.608 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.317 5.317 11 C 0.052 3.948 12 C -0.285 4.285 13 C 0.260 3.740 14 N -0.630 5.630 15 C 0.518 3.482 16 O -0.495 6.495 17 C 0.051 3.949 18 O -0.357 6.357 19 C 0.090 3.910 20 C -0.134 4.134 21 C -0.111 4.111 22 C -0.055 4.055 23 C -0.113 4.113 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.110 4.110 28 N -0.301 5.301 29 H 0.267 0.733 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.412 0.588 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.773 -26.111 -3.858 33.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.182 4.182 3 Si 0.907 3.093 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.647 4.647 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.098 5.098 11 C -0.098 4.098 12 C -0.316 4.316 13 C 0.006 3.994 14 N -0.279 5.279 15 C 0.303 3.697 16 O -0.366 6.366 17 C -0.029 4.029 18 O -0.276 6.276 19 C 0.014 3.986 20 C -0.152 4.152 21 C -0.130 4.130 22 C -0.055 4.055 23 C -0.131 4.131 24 C -0.136 4.136 25 C -0.140 4.140 26 C -0.139 4.139 27 C -0.128 4.128 28 N -0.132 5.132 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.186 0.814 33 H 0.179 0.821 34 H 0.247 0.753 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 20.016 -23.906 -3.792 31.409 hybrid contribution 0.485 -1.969 -0.071 2.029 sum 20.501 -25.875 -3.863 33.237 Atomic orbital electron populations 1.70822 1.06789 1.30472 1.45975 1.25924 0.96307 1.02807 0.93112 0.83381 0.74672 0.74315 0.76970 1.21200 1.21256 1.20701 1.22134 0.95419 0.90422 1.56699 0.91789 1.19775 0.86309 0.82822 0.98026 1.48790 1.23335 1.19523 1.18194 1.22573 1.00442 0.90108 0.96695 1.21552 1.02183 1.06327 1.01553 1.19051 0.91411 0.94235 0.94661 1.42281 1.30229 1.24896 1.30538 1.20156 0.84210 0.80056 0.85322 1.90680 1.61681 1.59387 1.24903 1.22091 0.95870 0.88699 0.96268 1.88042 1.49032 1.37552 1.52929 1.21506 0.88928 0.92716 0.95479 1.23088 0.98327 0.92883 1.00920 1.21595 1.00970 0.91208 0.99178 1.19022 0.99778 0.93528 0.93175 1.21404 0.99386 0.98801 0.93490 1.21132 0.99515 0.92843 1.00102 1.21245 1.00061 0.98113 0.94550 1.21104 1.00136 0.98279 0.94363 1.21273 0.99412 0.92253 0.99850 1.77346 1.03550 1.16175 1.16120 0.92235 0.93584 0.94729 0.81423 0.82115 0.75308 0.89701 0.89644 0.92231 0.91584 0.85810 0.86103 0.85512 0.85831 0.86073 0.85943 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.28 13.65 55.43 0.76 -25.52 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 24.85 29.90 -169.99 -5.08 19.77 16 4 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.61 -17.08 9.24 -34.44 -0.32 -17.40 16 8 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.25 6.29 5.57 -5.19 -0.03 6.26 16 10 N -0.32 -7.41 3.67 -62.56 -0.23 -7.64 16 11 C 0.05 1.04 11.43 -17.24 -0.20 0.84 16 12 C -0.28 -5.72 9.61 -39.83 -0.38 -6.10 16 13 C 0.26 5.20 8.11 -154.39 -1.25 3.95 16 14 N -0.63 -9.39 5.45 -11.13 -0.06 -9.45 16 15 C 0.52 7.37 7.87 -10.99 -0.09 7.28 16 16 O -0.50 -9.08 13.63 -14.36 -0.20 -9.27 16 17 C 0.05 0.47 6.42 36.00 0.23 0.70 16 18 O -0.36 -3.99 9.86 -55.14 -0.54 -4.53 16 19 C 0.09 0.66 6.36 36.01 0.23 0.89 16 20 C -0.13 -1.06 9.31 -36.22 -0.34 -1.40 16 21 C -0.11 -0.81 9.51 -37.57 -0.36 -1.16 16 22 C -0.06 -0.44 5.87 -105.01 -0.62 -1.06 16 23 C -0.11 -0.90 9.40 -39.19 -0.37 -1.27 16 24 C -0.12 -0.84 10.03 -39.64 -0.40 -1.24 16 25 C -0.12 -0.80 10.04 -39.50 -0.40 -1.19 16 26 C -0.12 -0.78 10.03 -39.64 -0.40 -1.18 16 27 C -0.11 -0.77 9.79 -39.20 -0.38 -1.15 16 28 N -0.30 -6.94 12.42 31.44 0.39 -6.55 16 29 H 0.27 7.59 7.22 -40.82 -0.29 7.30 16 30 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 31 H 0.03 0.91 8.00 -51.93 -0.42 0.49 16 32 H 0.17 2.76 8.06 -52.48 -0.42 2.33 16 33 H 0.16 3.16 5.92 -52.49 -0.31 2.85 16 34 H 0.41 4.70 8.82 -40.82 -0.36 4.34 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.33 7.88 -51.93 -0.41 -0.07 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.12 1.02 6.04 -52.48 -0.32 0.70 16 40 H 0.12 0.66 7.92 -52.48 -0.42 0.24 16 41 H 0.13 0.91 6.17 -52.48 -0.32 0.58 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.12 0.55 8.06 -52.49 -0.42 0.12 16 44 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 45 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 LS Contribution 392.39 15.07 5.91 5.91 Total: -1.00 -36.03 392.39 -10.06 -46.09 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.85 Total: 3.89 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -5.16 Total: -12.69 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.86 Total: -49.17 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.74 Total: -13.81 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.08 Total: 19.77 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.03 -10.06 -46.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155392003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.639 kcal (2) G-P(sol) polarization free energy of solvation -36.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds