Wall clock time and date at job start Sat Apr 11 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46826 * 299.99873 * 3 2 1 6 6 H 1.48499 * 109.46908 * 59.99732 * 3 2 1 7 7 C 1.38656 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99765 * 180.02562 * 7 2 1 9 9 O 1.34827 * 119.99997 * 0.02562 * 7 2 1 10 10 C 1.35752 * 117.00096 * 185.05484 * 9 7 2 11 11 C 1.38875 * 120.06876 * 354.47023 * 10 9 7 12 12 C 1.38102 * 119.93280 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06513 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.92659 * 179.97438 * 13 12 11 15 15 N 1.46500 * 109.46681 * 90.00109 * 14 13 12 16 16 C 1.34783 * 119.99321 * 179.97438 * 15 14 13 17 17 O 1.21619 * 120.00305 * 359.97438 * 16 15 14 18 18 C 1.47162 * 119.99540 * 180.02562 * 16 15 14 19 19 N 1.37002 * 127.04858 * 359.96887 * 18 16 15 20 20 H 0.97002 * 125.14717 * 359.97438 * 19 18 16 21 21 N 1.28824 * 109.70320 * 179.97438 * 19 18 16 22 22 C 1.30115 * 110.77839 * 359.94973 * 21 19 18 23 23 C 1.37196 * 127.04206 * 179.97438 * 18 16 15 24 24 C 1.50390 * 129.91574 * 0.35331 * 23 18 16 25 25 C 1.53447 * 108.15124 * 163.67158 * 24 23 18 26 26 C 1.53035 * 109.73216 * 49.90564 * 25 24 23 27 27 C 1.50864 * 129.05617 * 180.31497 * 22 21 19 28 28 C 1.38295 * 120.13971 * 0.25202 * 13 12 11 29 29 C 1.38101 * 120.07189 * 359.45400 * 28 13 12 30 30 H 0.97003 * 119.99758 * 0.02562 * 1 2 3 31 31 H 1.08004 * 120.03514 * 359.97438 * 11 10 9 32 32 H 1.07999 * 119.96742 * 179.97438 * 12 11 10 33 33 H 1.08995 * 109.47344 * 329.99738 * 14 13 12 34 34 H 1.09001 * 109.46693 * 209.99553 * 14 13 12 35 35 H 0.96997 * 120.00700 * 359.97438 * 15 14 13 36 36 H 1.08997 * 109.72640 * 283.29322 * 24 23 18 37 37 H 1.08998 * 109.72862 * 43.97658 * 24 23 18 38 38 H 1.09002 * 109.36919 * 289.85294 * 25 24 23 39 39 H 1.08997 * 109.41759 * 169.98806 * 25 24 23 40 40 H 1.08997 * 109.40593 * 168.47768 * 26 25 24 41 41 H 1.09004 * 109.33841 * 48.68304 * 26 25 24 42 42 H 1.09003 * 109.71759 * 282.79013 * 27 22 21 43 43 H 1.09003 * 109.72011 * 43.39431 * 27 22 21 44 44 H 1.08005 * 119.96247 * 179.70424 * 28 13 12 45 45 H 1.07997 * 120.03998 * 180.27307 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3463 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1076 11 6 3.4571 -3.4395 0.0953 12 6 4.2022 -4.5972 0.2039 13 6 3.5684 -5.8204 0.3244 14 6 4.3846 -7.0818 0.4421 15 7 4.6551 -7.3582 1.8551 16 6 5.3734 -8.4441 2.2038 17 8 5.7967 -9.1946 1.3455 18 6 5.6447 -8.7221 3.6232 19 7 5.2407 -7.9798 4.7016 20 1 4.7167 -7.1649 4.6538 21 7 5.6622 -8.5279 5.7886 22 6 6.3359 -9.6103 5.5286 23 6 6.3540 -9.7777 4.1378 24 6 7.0426 -10.9132 3.4320 25 6 8.0130 -11.5725 4.4210 26 6 7.2869 -11.8745 5.7338 27 6 7.0024 -10.5678 6.4851 28 6 2.1872 -5.8891 0.3312 29 6 1.4364 -4.7345 0.2291 30 1 -0.4850 0.8401 -0.0004 31 1 3.9526 -2.4846 0.0000 32 1 5.2810 -4.5472 0.1939 33 1 5.3272 -6.9557 -0.0904 34 1 3.8309 -7.9146 0.0085 35 1 4.3172 -6.7599 2.5398 36 1 6.3036 -11.6428 3.1009 37 1 7.5947 -10.5318 2.5730 38 1 8.8464 -10.8971 4.6145 39 1 8.3907 -12.5013 3.9935 40 1 7.9107 -12.5196 6.3526 41 1 6.3457 -12.3801 5.5177 42 1 7.9379 -10.1381 6.8434 43 1 6.3412 -10.7646 7.3290 44 1 1.6951 -6.8464 0.4206 45 1 0.3578 -4.7883 0.2389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170784688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:12 Heat of formation + Delta-G solvation = -3.407891 kcal Electronic energy + Delta-G solvation = -27860.534482 eV Core-core repulsion = 23843.474360 eV Total energy + Delta-G solvation = -4017.060122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.74422 -41.01157 -40.39313 -38.53041 -37.83601 -35.81090 -34.31934 -33.26400 -31.91015 -31.80694 -31.50161 -30.00424 -27.74387 -26.55396 -25.49256 -23.75967 -23.68079 -22.95943 -22.19134 -21.15542 -20.12623 -19.92032 -19.65212 -18.87284 -17.37353 -17.16859 -16.92092 -16.55998 -16.37140 -15.96781 -15.85719 -15.57786 -15.44978 -15.36781 -14.98732 -14.74725 -14.56353 -14.43403 -14.24565 -13.92712 -13.70568 -13.56418 -13.34127 -13.08060 -12.95976 -12.63819 -12.40180 -12.35946 -12.26894 -12.11622 -11.70280 -11.68267 -11.29034 -11.23265 -11.15357 -10.83834 -10.39736 -10.10883 -9.85111 -9.77645 -9.05846 -8.51169 -6.19394 0.14168 0.48518 0.54147 1.34292 1.41122 1.48654 1.51929 1.75457 2.05344 2.08503 2.14612 2.80564 3.13176 3.35946 3.45012 3.58101 3.80549 3.94123 3.99406 4.06834 4.13812 4.15520 4.28077 4.41539 4.49257 4.53016 4.57006 4.69509 4.71272 4.73163 4.77362 5.00509 5.06314 5.08946 5.11463 5.17749 5.21506 5.22787 5.28008 5.34794 5.48680 5.52472 5.58083 5.66065 5.70372 5.95231 5.98718 6.12092 6.35349 6.89253 6.93831 6.99218 7.72653 8.71683 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021411 B = 0.001898 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.404633 B =14745.475601 C =15311.576347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.124 3.876 11 C -0.244 4.244 12 C -0.044 4.044 13 C -0.185 4.185 14 C 0.185 3.815 15 N -0.710 5.710 16 C 0.593 3.407 17 O -0.551 6.551 18 C -0.045 4.045 19 N -0.382 5.382 20 H 0.454 0.546 21 N -0.277 5.277 22 C 0.021 3.979 23 C -0.131 4.131 24 C -0.046 4.046 25 C -0.116 4.116 26 C -0.113 4.113 27 C -0.034 4.034 28 C -0.042 4.042 29 C -0.205 4.205 30 H 0.273 0.727 31 H 0.120 0.880 32 H 0.140 0.860 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.406 0.594 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.148 0.852 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.693 -21.141 10.741 28.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.489 4.489 8 H 0.122 0.878 9 O -0.135 6.135 10 C 0.073 3.927 11 C -0.263 4.263 12 C -0.063 4.063 13 C -0.186 4.186 14 C 0.063 3.937 15 N -0.361 5.361 16 C 0.378 3.622 17 O -0.428 6.428 18 C -0.172 4.172 19 N -0.100 5.100 20 H 0.301 0.699 21 N -0.109 5.109 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.084 4.084 25 C -0.153 4.153 26 C -0.151 4.151 27 C -0.073 4.073 28 C -0.061 4.061 29 C -0.224 4.224 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.158 0.842 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.242 0.758 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.166 0.834 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.202 -20.814 10.909 27.988 hybrid contribution -0.591 1.717 -0.662 1.933 sum 14.610 -19.097 10.247 26.137 Atomic orbital electron populations 1.70184 1.08012 1.28822 1.48542 1.26582 0.96832 1.02762 0.95807 0.84538 0.78312 0.74916 0.78531 1.17385 1.19454 1.19413 1.21867 0.92571 0.81291 1.53144 0.87848 1.83950 1.36114 1.12704 1.80696 1.20010 0.91642 0.87961 0.93136 1.21248 0.92997 1.00114 1.11982 1.20956 0.99851 0.90699 0.94784 1.19458 0.93419 0.94038 1.11686 1.19993 0.98901 0.93951 0.80810 1.46052 1.54124 1.26085 1.09828 1.17021 0.78283 0.81155 0.85714 1.90809 1.52855 1.48773 1.50333 1.21136 1.08676 0.98431 0.88959 1.43757 1.41728 1.22962 1.01544 0.69853 1.72824 1.15012 1.11255 1.11808 1.22526 1.01535 0.95521 0.94312 1.20802 1.01518 0.97811 0.94166 1.20075 0.97712 0.93189 0.97390 1.21628 0.97466 1.01203 0.95034 1.21587 1.01344 0.95911 0.96243 1.20201 0.99908 0.92004 0.95145 1.20895 0.93066 0.97002 0.95117 1.20459 1.00116 0.90409 1.11442 0.91783 0.86230 0.84232 0.90347 0.90094 0.75817 0.90654 0.91218 0.91648 0.89601 0.88537 0.91863 0.88991 0.89256 0.83405 0.86703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.93 13.67 21.61 0.30 -54.63 16 2 C -0.02 -1.21 5.49 84.83 0.47 -0.74 16 3 Si 1.02 41.55 29.55 68.60 2.03 43.58 16 4 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 6 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.41 -23.10 9.49 67.92 0.64 -22.46 16 8 H 0.10 5.28 5.20 -2.91 -0.02 5.26 16 9 O -0.23 -13.17 9.76 -22.73 -0.22 -13.39 16 10 C 0.12 5.73 6.65 22.58 0.15 5.88 16 11 C -0.24 -9.72 9.17 22.39 0.21 -9.51 16 12 C -0.04 -1.34 9.69 22.25 0.22 -1.13 16 13 C -0.18 -4.93 5.25 -19.83 -0.10 -5.03 16 14 C 0.19 4.05 5.80 85.64 0.50 4.55 16 15 N -0.71 -14.20 5.55 -470.36 -2.61 -16.81 16 16 C 0.59 13.95 7.80 86.59 0.68 14.63 16 17 O -0.55 -16.05 15.79 -4.09 -0.06 -16.11 16 18 C -0.05 -0.99 7.14 40.44 0.29 -0.70 16 19 N -0.38 -7.24 6.88 -48.48 -0.33 -7.57 16 20 H 0.45 6.14 8.24 -219.81 -1.81 4.32 16 21 N -0.28 -5.94 12.13 -47.45 -0.58 -6.51 16 22 C 0.02 0.42 7.13 43.32 0.31 0.73 16 23 C -0.13 -2.79 6.00 -19.76 -0.12 -2.91 16 24 C -0.05 -0.82 5.52 29.90 0.17 -0.66 16 25 C -0.12 -1.36 5.88 30.76 0.18 -1.17 16 26 C -0.11 -1.09 5.85 30.74 0.18 -0.91 16 27 C -0.03 -0.42 6.31 30.03 0.19 -0.23 16 28 C -0.04 -1.24 9.69 22.25 0.22 -1.02 16 29 C -0.20 -7.95 9.99 22.39 0.22 -7.73 16 30 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 31 H 0.12 4.91 5.64 -2.91 -0.02 4.90 16 32 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 33 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16 34 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 35 H 0.41 6.77 7.67 -92.71 -0.71 6.06 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.44 7.68 -2.39 -0.02 1.43 16 38 H 0.06 0.77 8.11 -2.39 -0.02 0.75 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.06 0.68 8.10 -2.39 -0.02 0.66 16 42 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 45 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -73.22 377.52 1.43 -71.79 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: -1.47 Total: 28.07 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 4.38 Total: -28.41 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -3.22 Total: -85.52 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.29 Total: -29.50 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -73.22 1.43 -71.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170784688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.378 kcal (2) G-P(sol) polarization free energy of solvation -73.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds