Wall clock time and date at job start Sat Apr 11 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00356 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00478 * 3 2 1 6 6 H 1.48501 * 109.47006 * 150.00348 * 3 2 1 7 7 C 1.37884 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00191 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21551 * 119.99874 * 0.02562 * 13 12 11 15 15 C 1.47886 * 119.99648 * 180.02562 * 13 12 11 16 16 C 1.41582 * 119.89187 * 180.02562 * 15 13 12 17 17 C 1.36327 * 118.23910 * 179.97438 * 16 15 13 18 18 C 1.41269 * 117.93401 * 359.97438 * 17 16 15 19 19 O 1.21976 * 120.22604 * 179.97438 * 18 17 16 20 20 N 1.34619 * 119.54814 * 0.02562 * 18 17 16 21 21 C 1.46500 * 119.09964 * 179.97438 * 20 18 17 22 22 C 1.50702 * 109.46806 * 89.99519 * 21 20 18 23 23 C 1.38227 * 120.00428 * 269.72428 * 22 21 20 24 24 C 1.38238 * 119.99952 * 179.76819 * 23 22 21 25 25 C 1.38236 * 120.00138 * 0.51240 * 24 23 22 26 26 C 1.38240 * 119.99680 * 359.74204 * 25 24 23 27 27 C 1.38236 * 120.00116 * 0.02562 * 26 25 24 28 28 N 1.28390 * 121.79715 * 359.73261 * 20 18 17 29 29 H 0.96997 * 120.00125 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 31 31 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 32 32 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 33 33 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 34 34 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 35 35 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 36 36 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 37 37 H 1.08003 * 120.87832 * 359.97438 * 16 15 13 38 38 H 1.07995 * 121.03548 * 180.02562 * 17 16 15 39 39 H 1.08996 * 109.47328 * 210.00125 * 21 20 18 40 40 H 1.09002 * 109.47050 * 330.00120 * 21 20 18 41 41 H 1.08007 * 120.00269 * 0.02562 * 23 22 21 42 42 H 1.08006 * 120.00125 * 180.23263 * 24 23 22 43 43 H 1.07996 * 119.99839 * 179.72627 * 25 24 23 44 44 H 1.07998 * 119.99695 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.00043 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6366 -0.0022 12 7 6.0398 -4.0179 -0.0027 13 6 7.3649 -4.2642 -0.0033 14 8 8.1547 -3.3403 -0.0029 15 6 7.8578 -5.6585 -0.0044 16 6 9.2502 -5.9146 -0.0044 17 6 9.6673 -7.2125 -0.0049 18 6 8.6815 -8.2244 -0.0047 19 8 9.0080 -9.3997 -0.0056 20 7 7.3794 -7.8828 -0.0047 21 6 6.3654 -8.9401 -0.0051 22 6 6.0178 -9.3032 1.4156 23 6 6.7185 -10.3022 2.0650 24 6 6.4027 -10.6319 3.3698 25 6 5.3792 -9.9698 4.0217 26 6 4.6749 -8.9743 3.3705 27 6 4.9939 -8.6413 2.0673 28 7 7.0020 -6.6556 0.0003 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6805 0.8888 31 1 3.8745 -0.6801 -0.8912 32 1 3.6578 -3.1506 -0.8908 33 1 3.6585 -3.1503 0.8892 34 1 5.9155 -2.1225 0.8873 35 1 5.9141 -2.1231 -0.8927 36 1 5.4094 -4.7551 -0.0026 37 1 9.9631 -5.1033 -0.0041 38 1 10.7186 -7.4595 -0.0045 39 1 5.4716 -8.5862 -0.5188 40 1 6.7563 -9.8182 -0.5192 41 1 7.5155 -10.8224 1.5543 42 1 6.9527 -11.4099 3.8785 43 1 5.1296 -10.2305 5.0396 44 1 3.8750 -8.4574 3.8796 45 1 4.4434 -7.8640 1.5584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171508990.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:17 Heat of formation + Delta-G solvation = -8.039274 kcal Electronic energy + Delta-G solvation = -28171.883006 eV Core-core repulsion = 24154.622052 eV Total energy + Delta-G solvation = -4017.260954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.34595 -40.83747 -40.07579 -38.90869 -37.08568 -36.21081 -35.18219 -33.54149 -33.14493 -32.12089 -31.86734 -29.20454 -28.33646 -26.46521 -25.11981 -24.45296 -23.53718 -22.52423 -22.28598 -21.96430 -19.74257 -19.28430 -18.83058 -18.23843 -17.88609 -17.51336 -17.02477 -16.84799 -16.69131 -16.18353 -16.07067 -15.99457 -15.48869 -15.38816 -14.78281 -14.74436 -14.45742 -14.36931 -14.34026 -14.00823 -13.77536 -13.63032 -13.54477 -13.35284 -12.82784 -12.70425 -12.66262 -12.32995 -11.98278 -11.94088 -11.76979 -11.55947 -11.52079 -11.35700 -11.28382 -10.97892 -10.72883 -10.18903 -9.90486 -9.89724 -9.72001 -8.26182 -6.29828 -0.70306 -0.03776 0.10721 0.42094 1.09483 1.40128 1.41875 1.53299 1.63472 1.96902 2.38015 2.39474 2.75655 2.81123 3.10101 3.52280 3.58080 3.61529 3.69394 3.82678 4.07118 4.12128 4.19670 4.23666 4.25689 4.35864 4.48095 4.52955 4.55376 4.55636 4.66212 4.79845 4.91323 4.93717 4.93834 4.97435 5.08054 5.08839 5.33048 5.47582 5.52774 5.53366 5.54915 5.60898 5.68789 6.00339 6.27949 6.31124 6.41516 6.78621 6.79228 7.03076 7.35041 8.90289 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.002455 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.340418 B =11403.454756 C =13247.372325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.244 1.244 7 C -0.529 4.529 8 H 0.037 0.963 9 C -0.012 4.012 10 C -0.102 4.102 11 C 0.125 3.875 12 N -0.698 5.698 13 C 0.587 3.413 14 O -0.558 6.558 15 C 0.015 3.985 16 C -0.026 4.026 17 C -0.188 4.188 18 C 0.472 3.528 19 O -0.549 6.549 20 N -0.326 5.326 21 C 0.147 3.853 22 C -0.131 4.131 23 C -0.105 4.105 24 C -0.134 4.134 25 C -0.112 4.112 26 C -0.135 4.135 27 C -0.101 4.101 28 N -0.173 5.173 29 H 0.265 0.735 30 H 0.023 0.977 31 H 0.022 0.978 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.417 0.583 37 H 0.179 0.821 38 H 0.192 0.808 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.225 -21.330 3.499 28.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.167 1.167 7 C -0.567 4.567 8 H 0.055 0.945 9 C -0.050 4.050 10 C -0.140 4.140 11 C 0.002 3.998 12 N -0.349 5.349 13 C 0.371 3.629 14 O -0.434 6.434 15 C -0.156 4.156 16 C -0.049 4.049 17 C -0.218 4.218 18 C 0.273 3.727 19 O -0.429 6.429 20 N -0.147 5.147 21 C 0.028 3.972 22 C -0.132 4.132 23 C -0.124 4.124 24 C -0.152 4.152 25 C -0.130 4.130 26 C -0.153 4.153 27 C -0.119 4.119 28 N -0.004 5.004 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.254 0.746 37 H 0.197 0.803 38 H 0.209 0.791 39 H 0.151 0.849 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.157 0.843 43 H 0.161 0.839 44 H 0.157 0.843 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 17.911 -21.448 3.478 28.159 hybrid contribution 0.189 0.458 0.006 0.495 sum 18.100 -20.991 3.484 27.935 Atomic orbital electron populations 1.70062 1.08307 1.28071 1.52895 1.25997 0.95558 1.03485 0.94312 0.85705 0.79648 0.78444 0.79155 1.19308 1.21379 1.16714 1.21487 0.92051 0.93164 1.49992 0.94474 1.19471 0.93905 0.94651 0.97004 1.21490 0.92089 0.98153 1.02252 1.21463 0.94410 0.81636 1.02338 1.45877 1.06459 1.10152 1.72431 1.17371 0.82786 0.86052 0.76697 1.90816 1.56146 1.44569 1.51903 1.21630 0.92391 0.92047 1.09554 1.22359 0.94499 0.98882 0.89177 1.22892 1.02190 0.90938 1.05752 1.18473 0.83347 0.91401 0.79506 1.90937 1.80271 1.19596 1.52063 1.47074 1.08622 1.03433 1.55586 1.21161 0.91643 0.89022 0.95329 1.19927 0.98529 0.98761 0.95946 1.21333 0.98707 0.96875 0.95443 1.21448 0.98249 1.00801 0.94725 1.21575 0.95127 0.95449 1.00890 1.21500 1.00653 0.98123 0.94995 1.21367 0.96485 0.98790 0.95276 1.71007 1.33188 0.90757 1.05466 0.92608 0.95876 0.95976 0.91712 0.91735 0.91440 0.91298 0.74577 0.80323 0.79116 0.84914 0.86188 0.85793 0.84257 0.83890 0.84322 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.71 13.96 21.45 0.30 -58.41 16 2 C 0.00 0.18 5.47 84.66 0.46 0.64 16 3 Si 0.95 43.19 27.47 68.60 1.88 45.08 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.24 -10.24 6.54 99.48 0.65 -9.58 16 7 C -0.53 -29.14 9.66 25.60 0.25 -28.89 16 8 H 0.04 2.23 7.99 -2.91 -0.02 2.21 16 9 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 10 C -0.10 -3.41 5.27 30.59 0.16 -3.25 16 11 C 0.12 3.52 5.67 86.38 0.49 4.01 16 12 N -0.70 -16.53 5.54 -465.92 -2.58 -19.12 16 13 C 0.59 14.36 7.81 86.80 0.68 15.04 16 14 O -0.56 -16.74 16.38 -3.88 -0.06 -16.80 16 15 C 0.01 0.29 6.84 42.59 0.29 0.58 16 16 C -0.03 -0.42 9.67 22.65 0.22 -0.20 16 17 C -0.19 -2.98 10.11 22.57 0.23 -2.76 16 18 C 0.47 9.68 7.46 85.01 0.63 10.32 16 19 O -0.55 -13.63 16.04 -5.24 -0.08 -13.71 16 20 N -0.33 -6.00 3.20 -476.21 -1.53 -7.53 16 21 C 0.15 2.22 5.68 85.63 0.49 2.70 16 22 C -0.13 -2.23 5.46 -19.87 -0.11 -2.34 16 23 C -0.10 -1.86 9.68 22.27 0.22 -1.65 16 24 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 25 C -0.11 -1.65 10.05 22.27 0.22 -1.42 16 26 C -0.13 -2.13 10.05 22.27 0.22 -1.90 16 27 C -0.10 -1.67 9.70 22.27 0.22 -1.45 16 28 N -0.17 -3.23 10.10 -48.19 -0.49 -3.72 16 29 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 30 H 0.02 0.98 7.20 -2.39 -0.02 0.97 16 31 H 0.02 0.93 7.57 -2.38 -0.02 0.91 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.07 1.98 8.14 -2.38 -0.02 1.97 16 36 H 0.42 8.36 7.81 -92.71 -0.72 7.64 16 37 H 0.18 2.34 7.72 -2.91 -0.02 2.32 16 38 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 39 H 0.13 1.45 8.08 -2.39 -0.02 1.43 16 40 H 0.12 1.74 7.30 -2.39 -0.02 1.72 16 41 H 0.12 2.29 7.49 -2.91 -0.02 2.27 16 42 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 43 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 44 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 45 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -71.94 388.45 2.69 -69.25 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.24 Total: 17.84 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 5.01 Total: -12.86 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -4.30 Total: -88.78 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.15 Total: -30.52 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.88 Total: 45.08 kcal Total: -71.94 2.69 -69.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171508990.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.206 kcal (2) G-P(sol) polarization free energy of solvation -71.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds