Wall clock time and date at job start Sat Apr 11 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99988 * 2 1 4 4 H 1.48499 * 109.46696 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47123 * 299.99965 * 3 2 1 6 6 H 1.48491 * 109.47103 * 60.00171 * 3 2 1 7 7 C 1.37879 * 119.99492 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99415 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00211 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47334 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47461 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47340 * 179.97438 * 11 10 9 13 13 O 1.42107 * 110.53919 * 68.37677 * 12 11 10 14 14 O 1.42095 * 110.54518 * 291.63150 * 12 11 10 15 15 N 1.65594 * 104.45182 * 179.97438 * 12 11 10 16 16 C 1.46500 * 119.99670 * 65.27837 * 15 12 11 17 17 C 1.52998 * 109.47138 * 164.45113 * 16 15 12 18 18 H 1.08996 * 109.47291 * 54.49933 * 17 16 15 19 19 C 1.53005 * 109.47174 * 294.50066 * 17 16 15 20 20 C 1.53000 * 109.47277 * 175.14510 * 19 17 16 21 21 O 1.42900 * 109.47274 * 175.69972 * 20 19 17 22 22 C 1.50698 * 109.47302 * 174.50100 * 17 16 15 23 23 C 1.38234 * 120.00136 * 59.72772 * 22 17 16 24 24 C 1.38239 * 120.00163 * 179.79215 * 23 22 17 25 25 C 1.38235 * 119.99887 * 0.43500 * 24 23 22 26 26 C 1.38235 * 119.99933 * 359.81903 * 25 24 23 27 27 C 1.38234 * 120.00182 * 239.99843 * 22 17 16 28 28 H 0.97007 * 119.99996 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47589 * 59.99638 * 9 7 2 30 30 H 1.08997 * 109.47342 * 299.99708 * 9 7 2 31 31 H 1.09007 * 109.47059 * 59.99798 * 10 9 7 32 32 H 1.08997 * 109.46813 * 300.00210 * 10 9 7 33 33 H 1.09001 * 109.47293 * 59.99919 * 11 10 9 34 34 H 1.08997 * 109.47511 * 300.00068 * 11 10 9 35 35 H 0.96998 * 120.00331 * 244.99932 * 15 12 11 36 36 H 1.09000 * 109.47336 * 284.44940 * 16 15 12 37 37 H 1.09000 * 109.47156 * 44.45180 * 16 15 12 38 38 H 1.08998 * 109.47141 * 295.14270 * 19 17 16 39 39 H 1.08993 * 109.47092 * 55.14243 * 19 17 16 40 40 H 1.09001 * 109.47042 * 295.70165 * 20 19 17 41 41 H 1.08997 * 109.47497 * 55.69959 * 20 19 17 42 42 H 0.96704 * 114.00070 * 179.97438 * 21 20 19 43 43 H 1.08007 * 120.00090 * 359.97438 * 23 22 17 44 44 H 1.07995 * 120.00001 * 180.27425 * 24 23 22 45 45 H 1.07997 * 119.99870 * 179.83229 * 25 24 23 46 46 H 1.08001 * 119.99743 * 180.02562 * 26 25 24 47 47 H 1.08009 * 119.99859 * 359.97438 * 27 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 16 2.6588 -6.3659 0.0004 13 8 3.3564 -6.4262 1.2370 14 8 3.3547 -6.4264 -1.2370 15 7 1.7084 -7.7220 0.0019 16 6 0.8523 -8.0177 -1.1496 17 6 0.3896 -9.4744 -1.0804 18 1 -0.0863 -9.6591 -0.1174 19 6 1.5968 -10.4010 -1.2387 20 6 1.1536 -11.8531 -1.0489 21 8 2.2589 -12.7246 -1.2952 22 6 -0.5971 -9.7413 -2.1877 23 6 -0.2197 -9.5682 -3.5063 24 6 -1.1235 -9.8171 -4.5222 25 6 -2.4074 -10.2305 -4.2193 26 6 -2.7863 -10.3985 -2.9006 27 6 -1.8812 -10.1538 -1.8848 28 1 -0.4850 0.8401 0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 2.8718 -3.6044 0.8906 32 1 2.8717 -3.6044 -0.8894 33 1 0.8531 -5.0451 -0.8886 34 1 0.8537 -5.0446 0.8913 35 1 1.7216 -8.3227 0.7634 36 1 -0.0164 -7.3595 -1.1350 37 1 1.4137 -7.8581 -2.0702 38 1 2.0211 -10.2780 -2.2351 39 1 2.3483 -10.1498 -0.4902 40 1 0.7999 -11.9945 -0.0276 41 1 0.3483 -12.0814 -1.7471 42 1 2.0502 -13.6633 -1.1926 43 1 0.7821 -9.2412 -3.7428 44 1 -0.8274 -9.6861 -5.5525 45 1 -3.1142 -10.4223 -5.0129 46 1 -3.7892 -10.7219 -2.6639 47 1 -2.1772 -10.2852 -0.8544 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177733299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:25 Heat of formation + Delta-G solvation = -126.122941 kcal Electronic energy + Delta-G solvation = -27159.732851 eV Core-core repulsion = 23240.502606 eV Total energy + Delta-G solvation = -3919.230245 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.08097 -37.60996 -36.91426 -36.39205 -35.73417 -34.67102 -33.37073 -32.18790 -31.21133 -30.33325 -27.81172 -27.70191 -23.80831 -23.70429 -23.18140 -22.55868 -20.70418 -20.36195 -19.24394 -17.78318 -17.66540 -16.89572 -16.69303 -16.35350 -15.91947 -15.78320 -15.30683 -15.20857 -14.97768 -14.60362 -14.47165 -14.11243 -14.00766 -13.64237 -13.54895 -13.09766 -12.60775 -12.47334 -12.31440 -12.24945 -11.95392 -11.83798 -11.79136 -11.78009 -11.73750 -11.49153 -11.23678 -11.11859 -10.94046 -10.92379 -10.83648 -10.41810 -10.29249 -9.95708 -9.72546 -9.32503 -9.20873 -9.09307 -8.99657 -8.41359 -6.06100 -4.08982 0.45673 1.03565 1.11022 2.83669 3.29319 3.36851 3.41905 3.47048 3.75351 3.95310 4.25150 4.40757 4.42569 4.46617 4.61973 4.70788 4.78120 4.81716 4.88518 4.94930 5.06131 5.11395 5.17105 5.19190 5.21327 5.24613 5.30557 5.44092 5.50979 5.61026 5.68157 5.74704 5.85096 5.89027 5.90977 6.17862 6.24026 6.26739 6.31098 6.44872 6.69462 6.85468 6.88485 7.27975 7.56939 7.66609 7.92186 8.32698 8.97577 9.55821 11.05180 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013334 B = 0.002411 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.382824 B =11611.020273 C =13101.348025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.106 4.106 11 C -0.609 4.609 12 S 2.601 3.399 13 O -0.963 6.963 14 O -0.961 6.961 15 N -1.125 6.125 16 C 0.122 3.878 17 C -0.050 4.050 18 H 0.089 0.911 19 C -0.116 4.116 20 C 0.076 3.924 21 O -0.574 6.574 22 C -0.079 4.079 23 C -0.111 4.111 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.120 4.120 27 C -0.114 4.114 28 H 0.261 0.739 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.415 0.585 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.048 0.952 42 H 0.378 0.622 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.797 -27.368 -4.635 28.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.145 4.145 11 C -0.741 4.741 12 S 2.697 3.303 13 O -0.953 6.953 14 O -0.951 6.951 15 N -0.883 5.883 16 C -0.004 4.004 17 C -0.069 4.069 18 H 0.108 0.892 19 C -0.153 4.153 20 C -0.001 4.001 21 O -0.380 6.380 22 C -0.080 4.080 23 C -0.129 4.129 24 C -0.134 4.134 25 C -0.140 4.140 26 C -0.138 4.138 27 C -0.132 4.132 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.248 0.752 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.225 0.775 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.683 -26.576 -4.912 27.428 hybrid contribution -0.824 0.382 0.409 0.996 sum -5.506 -26.193 -4.503 27.142 Atomic orbital electron populations 1.69971 1.06093 1.26660 1.50736 1.25026 0.94890 0.99393 0.95119 0.86498 0.80204 0.83505 0.77613 1.19590 1.20943 1.20943 1.21293 0.93300 0.90878 1.50866 0.92307 1.19066 0.93538 0.90484 0.97725 1.21501 0.99385 0.91672 1.01989 1.30543 1.16388 1.15910 1.11229 1.05296 0.75589 0.75215 0.74232 1.93581 1.70652 1.85889 1.45210 1.93568 1.70228 1.85688 1.45603 1.55725 1.62625 1.42552 1.27410 1.21357 0.94388 0.95641 0.89039 1.20286 0.94519 0.94349 0.97787 0.89240 1.21609 0.97305 0.92127 1.04286 1.22207 0.88485 0.90434 0.99020 1.86492 1.37619 1.20218 1.93629 1.19689 0.94365 0.99787 0.94119 1.21113 1.00033 0.99600 0.92176 1.21183 0.93709 0.99144 0.99381 1.21185 0.96431 0.99834 0.96597 1.21141 0.99465 1.00232 0.92925 1.21068 0.92901 0.99892 0.99386 0.92961 0.96127 0.96120 0.91569 0.91547 0.85537 0.85268 0.75156 0.90966 0.89702 0.90389 0.90272 0.93821 0.93422 0.77540 0.85647 0.85929 0.86182 0.86101 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.76 4.97 -27.89 -0.14 0.63 16 10 C -0.11 -2.15 5.16 -26.73 -0.14 -2.28 16 11 C -0.61 -9.22 6.08 37.15 0.23 -9.00 16 12 S 2.60 37.39 5.46 -107.50 -0.59 36.81 16 13 O -0.96 -16.74 18.08 -57.54 -1.04 -17.78 16 14 O -0.96 -16.66 17.48 -57.54 -1.01 -17.66 16 15 N -1.12 -11.37 5.35 -10.61 -0.06 -11.42 16 16 C 0.12 1.11 5.26 -4.04 -0.02 1.09 16 17 C -0.05 -0.37 2.06 -91.77 -0.19 -0.56 16 18 H 0.09 0.54 7.88 -51.93 -0.41 0.13 16 19 C -0.12 -0.98 4.90 -26.73 -0.13 -1.11 16 20 C 0.08 0.57 6.93 37.16 0.26 0.83 16 21 O -0.57 -4.96 13.66 -35.23 -0.48 -5.44 16 22 C -0.08 -0.62 3.69 -104.63 -0.39 -1.01 16 23 C -0.11 -0.93 8.71 -39.58 -0.34 -1.28 16 24 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 25 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 26 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 27 C -0.11 -0.83 9.67 -39.58 -0.38 -1.21 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 34 H 0.13 1.75 8.14 -51.93 -0.42 1.32 16 35 H 0.41 3.38 8.39 -34.47 -0.29 3.09 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.83 7.11 -51.93 -0.37 0.46 16 38 H 0.08 0.74 7.25 -51.93 -0.38 0.36 16 39 H 0.08 0.73 7.46 -51.93 -0.39 0.34 16 40 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.05 0.34 7.24 -51.93 -0.38 -0.03 16 42 H 0.38 1.53 9.12 45.56 0.42 1.94 16 43 H 0.13 1.00 7.14 -52.48 -0.37 0.62 16 44 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 46 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 47 H 0.12 0.68 7.95 -52.48 -0.42 0.26 16 LS Contribution 401.20 15.07 6.05 6.05 Total: -1.00 -37.07 401.20 -11.04 -48.10 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.78 Total: 1.99 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: -2.85 Total: -31.36 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.68 Total: -37.30 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -2.53 Total: -40.89 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 37.39 SS G_CDS: -0.59 Total: 36.81 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.07 -11.04 -48.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177733299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.020 kcal (2) G-P(sol) polarization free energy of solvation -37.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds