Wall clock time and date at job start Sat Apr 11 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86790 * 120.00039 * 2 1 4 4 H 1.48500 * 109.47058 * 239.99797 * 3 2 1 5 5 H 1.48500 * 109.47388 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47345 * 120.00079 * 3 2 1 7 7 C 1.38654 * 119.99512 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99712 * 180.02562 * 7 2 1 9 9 O 1.34825 * 120.00319 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00478 * 185.05965 * 9 7 2 11 11 C 1.38902 * 120.06324 * 354.49104 * 10 9 7 12 12 C 1.38077 * 119.92874 * 179.97438 * 11 10 9 13 13 C 1.38334 * 120.06724 * 359.74919 * 12 11 10 14 14 C 1.38277 * 120.13682 * 0.50841 * 13 12 11 15 15 C 1.50696 * 119.96042 * 179.76752 * 14 13 12 16 16 C 1.50698 * 109.47116 * 269.71908 * 15 14 13 17 17 O 1.21308 * 120.00261 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00312 * 180.02562 * 16 15 14 19 19 C 1.40756 * 120.00629 * 180.02562 * 18 16 15 20 20 C 1.40260 * 126.07802 * 359.97438 * 19 18 16 21 21 N 1.30830 * 108.33669 * 180.02562 * 20 19 18 22 22 N 1.40071 * 108.36987 * 359.97438 * 21 20 19 23 23 C 1.46497 * 126.05485 * 180.02562 * 22 21 20 24 24 C 1.53008 * 109.46881 * 305.02301 * 23 22 21 25 25 C 1.53001 * 117.49660 * 243.74775 * 24 23 22 26 26 C 1.52997 * 117.49549 * 175.08889 * 24 23 22 27 27 C 1.35755 * 126.08514 * 180.30820 * 19 18 16 28 28 C 1.38120 * 120.06955 * 359.48979 * 14 13 12 29 29 H 0.97000 * 119.99460 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.03495 * 359.95367 * 11 10 9 31 31 H 1.08001 * 119.96819 * 180.02562 * 12 11 10 32 32 H 1.08000 * 119.92765 * 180.27216 * 13 12 11 33 33 H 1.09005 * 109.47039 * 149.72356 * 15 14 13 34 34 H 1.08997 * 109.47697 * 29.72275 * 15 14 13 35 35 H 0.97004 * 119.99483 * 359.97438 * 18 16 15 36 36 H 1.08001 * 125.83252 * 0.03813 * 20 19 18 37 37 H 1.08994 * 109.47094 * 65.02552 * 23 22 21 38 38 H 1.08994 * 109.47043 * 185.02545 * 23 22 21 39 39 H 1.08997 * 115.54549 * 29.41912 * 24 23 22 40 40 H 1.08997 * 117.49816 * 359.97438 * 25 24 23 41 41 H 1.09002 * 117.49705 * 145.02558 * 25 24 23 42 42 H 1.09002 * 117.49438 * 214.98444 * 26 24 23 43 43 H 1.08999 * 117.50201 * 359.97438 * 26 24 23 44 44 H 1.07992 * 126.21899 * 359.97438 * 27 19 18 45 45 H 1.07997 * 120.03450 * 180.23278 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0698 -3.5047 0.1056 11 6 3.4572 -3.4395 0.0927 12 6 4.2023 -4.5969 0.2014 13 6 3.5684 -5.8199 0.3282 14 6 2.1873 -5.8885 0.3360 15 6 1.5009 -7.2235 0.4691 16 6 1.2649 -7.8057 -0.9007 17 8 1.6197 -7.1968 -1.8880 18 7 0.6596 -9.0031 -1.0289 19 6 0.4395 -9.5472 -2.3082 20 6 0.7956 -8.9564 -3.5295 21 7 0.4297 -9.7580 -4.4966 22 7 -0.1719 -10.8885 -3.9292 23 6 -0.7219 -12.0318 -4.6617 24 6 -1.7514 -11.5376 -5.6800 25 6 -3.2020 -11.9867 -5.4928 26 6 -2.3595 -12.5724 -6.6288 27 6 -0.1606 -10.7342 -2.5798 28 6 1.4365 -4.7343 0.2277 29 1 -0.4849 0.8401 0.0004 30 1 3.9527 -2.4846 -0.0025 31 1 5.2811 -4.5470 0.1918 32 1 4.1534 -6.7234 0.4174 33 1 0.5457 -7.0917 0.9774 34 1 2.1302 -7.8996 1.0478 35 1 0.3762 -9.4902 -0.2393 36 1 1.2879 -8.0029 -3.6508 37 1 0.0830 -12.5514 -5.1816 38 1 -1.2025 -12.7148 -3.9614 39 1 -1.5815 -10.5345 -6.0712 40 1 -3.4227 -12.6346 -4.6445 41 1 -3.9865 -11.2792 -5.7613 42 1 -2.5901 -12.2500 -7.6442 43 1 -2.0259 -13.6052 -6.5279 44 1 -0.5546 -11.4308 -1.8547 45 1 0.3579 -4.7882 0.2376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179084180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:35 Heat of formation + Delta-G solvation = 73.782475 kcal Electronic energy + Delta-G solvation = -27486.289910 eV Core-core repulsion = 23472.577014 eV Total energy + Delta-G solvation = -4013.712896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.43818 -39.68478 -38.72070 -37.89928 -36.45038 -34.70801 -32.75471 -32.30469 -31.90788 -29.70119 -29.09832 -27.49832 -26.28622 -25.16097 -22.88308 -22.46500 -21.86030 -21.48306 -21.16209 -20.49240 -19.71995 -17.82512 -17.52651 -17.01504 -16.75831 -16.21437 -15.81412 -15.43891 -15.14459 -14.89051 -14.51264 -14.33227 -14.24345 -13.95173 -13.88556 -13.42773 -13.38519 -13.25332 -12.89149 -12.58676 -12.36476 -12.16011 -12.01235 -11.84697 -11.52029 -11.20948 -11.00921 -10.86103 -10.78115 -10.73459 -10.73020 -10.56778 -10.49467 -10.41505 -9.69330 -9.48452 -9.27846 -8.77207 -8.01220 -7.79408 -7.15389 -6.37929 -3.96864 1.63184 2.08411 2.24978 2.45620 2.47185 3.14638 3.16921 3.17808 3.21435 3.21992 3.33103 3.99920 4.02410 4.34831 4.43728 4.55883 4.58413 4.64067 4.83163 4.90853 5.01840 5.05769 5.15556 5.15743 5.17891 5.26582 5.40848 5.50637 5.52586 5.59705 5.62425 5.70712 5.76890 5.80564 5.99438 6.14244 6.23895 6.40276 6.71643 6.76473 6.88220 6.98041 7.13386 7.32129 7.37635 7.43320 7.50648 7.63315 7.89131 8.07098 8.27993 9.07742 9.78996 10.80293 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016083 B = 0.001917 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.514021 B =14601.586152 C =15678.595372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.390 4.390 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.154 3.846 11 C -0.229 4.229 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.034 4.034 15 C -0.089 4.089 16 C 0.515 3.485 17 O -0.506 6.506 18 N -0.653 5.653 19 C 0.010 3.990 20 C 0.053 3.947 21 N -0.283 5.283 22 N -0.372 5.372 23 C 0.175 3.825 24 C -0.171 4.171 25 C -0.178 4.178 26 C -0.171 4.171 27 C 0.009 3.991 28 C -0.173 4.173 29 H 0.269 0.731 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.408 0.592 36 H 0.207 0.793 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.174 0.826 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.518 -27.025 -3.467 27.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.083 6.083 10 C 0.101 3.899 11 C -0.249 4.249 12 C -0.093 4.093 13 C -0.215 4.215 14 C -0.035 4.035 15 C -0.129 4.129 16 C 0.303 3.697 17 O -0.378 6.378 18 N -0.299 5.299 19 C -0.094 4.094 20 C -0.134 4.134 21 N -0.105 5.105 22 N -0.158 5.158 23 C 0.053 3.947 24 C -0.190 4.190 25 C -0.215 4.215 26 C -0.208 4.208 27 C -0.138 4.138 28 C -0.193 4.193 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.243 0.757 36 H 0.224 0.776 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.137 0.863 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.191 0.809 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.763 -26.605 -5.488 27.306 hybrid contribution 0.308 0.640 1.313 1.493 sum -2.455 -25.966 -4.175 26.414 Atomic orbital electron populations 1.70037 1.05920 1.27629 1.46398 1.25271 0.95839 0.98768 0.96692 0.85791 0.78678 0.79870 0.79141 1.19540 1.20345 1.19550 1.21262 0.91742 0.80877 1.52799 0.89185 1.83975 1.34214 1.11365 1.78762 1.19279 0.90248 0.87982 0.92411 1.21180 0.93841 0.98979 1.10879 1.20680 0.98376 0.92333 0.97942 1.20350 0.93273 0.96923 1.10905 1.18615 0.93212 0.91629 1.00065 1.20548 1.02826 0.95980 0.93545 1.20879 0.76841 0.79650 0.92375 1.90644 1.48547 1.59102 1.39556 1.42966 1.60475 1.20830 1.05640 1.17793 1.09236 0.95604 0.86776 1.24613 1.00111 1.00713 0.88013 1.77375 1.15856 0.94760 1.22482 1.48279 1.47163 1.16725 1.03603 1.21165 0.95751 0.84040 0.93709 1.22624 0.94145 1.01087 1.01118 1.23111 0.93870 1.03694 1.00809 1.22981 1.03684 0.98266 0.95884 1.21815 1.06426 0.99011 0.86582 1.19942 0.99070 0.89970 1.10304 0.92077 0.85644 0.87491 0.87908 0.87976 0.88126 0.75747 0.77646 0.89444 0.88732 0.86302 0.88588 0.88516 0.88303 0.88462 0.80917 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.89 13.67 55.48 0.76 -25.13 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.39 -11.20 9.49 30.89 0.29 -10.91 16 8 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 9 O -0.18 -5.28 9.76 0.06 0.00 -5.28 16 10 C 0.15 3.87 6.65 -39.11 -0.26 3.61 16 11 C -0.23 -5.20 9.17 -39.39 -0.36 -5.56 16 12 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 13 C -0.20 -3.50 9.70 -39.53 -0.38 -3.88 16 14 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 15 C -0.09 -1.12 5.83 -29.04 -0.17 -1.29 16 16 C 0.52 7.25 7.79 -10.99 -0.09 7.17 16 17 O -0.51 -9.43 13.19 5.53 0.07 -9.36 16 18 N -0.65 -6.92 5.47 -10.04 -0.05 -6.97 16 19 C 0.01 0.13 6.90 -83.89 -0.58 -0.45 16 20 C 0.05 0.79 10.84 -17.22 -0.19 0.60 16 21 N -0.28 -3.98 12.22 30.71 0.38 -3.60 16 22 N -0.37 -3.89 3.70 -61.03 -0.23 -4.11 16 23 C 0.17 1.19 6.80 -4.04 -0.03 1.16 16 24 C -0.17 -1.26 5.93 -90.62 -0.54 -1.79 16 25 C -0.18 -1.05 10.18 -26.69 -0.27 -1.32 16 26 C -0.17 -0.91 10.25 -26.69 -0.27 -1.19 16 27 C 0.01 0.08 11.52 -16.68 -0.19 -0.11 16 28 C -0.17 -3.78 9.65 -39.40 -0.38 -4.16 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 31 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 33 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 34 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 35 H 0.41 2.61 8.83 -40.82 -0.36 2.25 16 36 H 0.21 3.45 5.92 -52.49 -0.31 3.14 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.38 7.81 -51.93 -0.41 -0.03 16 39 H 0.12 1.19 7.91 -51.93 -0.41 0.78 16 40 H 0.10 0.44 8.03 -51.93 -0.42 0.03 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 45 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -36.55 388.09 -8.44 -45.00 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.83 Total: 7.70 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -4.36 Total: -20.07 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.85 Total: -39.82 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.07 Total: -14.64 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.55 -8.44 -45.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179084180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.779 kcal (2) G-P(sol) polarization free energy of solvation -36.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds