Wall clock time and date at job start Sat Apr 11 2020 06:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86790 * 120.00039 * 2 1 4 4 H 1.48500 * 109.47058 * 239.99797 * 3 2 1 5 5 H 1.48500 * 109.47388 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47345 * 120.00079 * 3 2 1 7 7 C 1.38654 * 119.99512 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99712 * 180.02562 * 7 2 1 9 9 O 1.34825 * 120.00319 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00478 * 185.05965 * 9 7 2 11 11 C 1.38902 * 120.06324 * 354.49104 * 10 9 7 12 12 C 1.38077 * 119.92874 * 179.97438 * 11 10 9 13 13 C 1.38334 * 120.06724 * 359.74919 * 12 11 10 14 14 C 1.38277 * 120.13682 * 0.50841 * 13 12 11 15 15 C 1.50696 * 119.96042 * 179.76752 * 14 13 12 16 16 C 1.50698 * 109.47116 * 269.71908 * 15 14 13 17 17 O 1.21308 * 120.00261 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00312 * 180.02562 * 16 15 14 19 19 C 1.40756 * 120.00629 * 180.02562 * 18 16 15 20 20 C 1.40260 * 126.07802 * 359.97438 * 19 18 16 21 21 N 1.30830 * 108.33669 * 180.02562 * 20 19 18 22 22 N 1.40071 * 108.36987 * 359.97438 * 21 20 19 23 23 C 1.46497 * 126.05485 * 180.02562 * 22 21 20 24 24 C 1.53008 * 109.46881 * 305.02301 * 23 22 21 25 25 C 1.53001 * 117.49660 * 243.74775 * 24 23 22 26 26 C 1.52997 * 117.49549 * 175.08889 * 24 23 22 27 27 C 1.35755 * 126.08514 * 180.30820 * 19 18 16 28 28 C 1.38120 * 120.06955 * 359.48979 * 14 13 12 29 29 H 0.97000 * 119.99460 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.03495 * 359.95367 * 11 10 9 31 31 H 1.08001 * 119.96819 * 180.02562 * 12 11 10 32 32 H 1.08000 * 119.92765 * 180.27216 * 13 12 11 33 33 H 1.09005 * 109.47039 * 149.72356 * 15 14 13 34 34 H 1.08997 * 109.47697 * 29.72275 * 15 14 13 35 35 H 0.97004 * 119.99483 * 359.97438 * 18 16 15 36 36 H 1.08001 * 125.83252 * 0.03813 * 20 19 18 37 37 H 1.08994 * 109.47094 * 65.02552 * 23 22 21 38 38 H 1.08994 * 109.47043 * 185.02545 * 23 22 21 39 39 H 1.08997 * 115.54549 * 29.41912 * 24 23 22 40 40 H 1.08997 * 117.49816 * 359.97438 * 25 24 23 41 41 H 1.09002 * 117.49705 * 145.02558 * 25 24 23 42 42 H 1.09002 * 117.49438 * 214.98444 * 26 24 23 43 43 H 1.08999 * 117.50201 * 359.97438 * 26 24 23 44 44 H 1.07992 * 126.21899 * 359.97438 * 27 19 18 45 45 H 1.07997 * 120.03450 * 180.23278 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0698 -3.5047 0.1056 11 6 3.4572 -3.4395 0.0927 12 6 4.2023 -4.5969 0.2014 13 6 3.5684 -5.8199 0.3282 14 6 2.1873 -5.8885 0.3360 15 6 1.5009 -7.2235 0.4691 16 6 1.2649 -7.8057 -0.9007 17 8 1.6197 -7.1968 -1.8880 18 7 0.6596 -9.0031 -1.0289 19 6 0.4395 -9.5472 -2.3082 20 6 0.7956 -8.9564 -3.5295 21 7 0.4297 -9.7580 -4.4966 22 7 -0.1719 -10.8885 -3.9292 23 6 -0.7219 -12.0318 -4.6617 24 6 -1.7514 -11.5376 -5.6800 25 6 -3.2020 -11.9867 -5.4928 26 6 -2.3595 -12.5724 -6.6288 27 6 -0.1606 -10.7342 -2.5798 28 6 1.4365 -4.7343 0.2277 29 1 -0.4849 0.8401 0.0004 30 1 3.9527 -2.4846 -0.0025 31 1 5.2811 -4.5470 0.1918 32 1 4.1534 -6.7234 0.4174 33 1 0.5457 -7.0917 0.9774 34 1 2.1302 -7.8996 1.0478 35 1 0.3762 -9.4902 -0.2393 36 1 1.2879 -8.0029 -3.6508 37 1 0.0830 -12.5514 -5.1816 38 1 -1.2025 -12.7148 -3.9614 39 1 -1.5815 -10.5345 -6.0712 40 1 -3.4227 -12.6346 -4.6445 41 1 -3.9865 -11.2792 -5.7613 42 1 -2.5901 -12.2500 -7.6442 43 1 -2.0259 -13.6052 -6.5279 44 1 -0.5546 -11.4308 -1.8547 45 1 0.3579 -4.7882 0.2376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179084180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:34 Heat of formation + Delta-G solvation = 48.956693 kcal Electronic energy + Delta-G solvation = -27487.366436 eV Core-core repulsion = 23472.577014 eV Total energy + Delta-G solvation = -4014.789423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.32946 -40.99566 -40.25766 -38.47036 -38.14231 -35.71033 -34.33497 -33.68239 -33.19257 -30.95530 -30.47375 -28.64596 -27.43069 -27.00411 -23.59801 -23.30248 -23.17987 -22.81926 -21.96338 -21.73342 -20.66055 -19.48744 -18.82000 -18.44441 -17.83687 -17.03042 -16.84162 -16.61351 -16.44477 -16.09482 -15.98894 -15.71948 -15.49282 -15.18178 -14.92346 -14.77958 -14.65912 -14.31552 -13.98014 -13.93079 -13.73735 -13.58554 -12.94108 -12.85278 -12.68998 -12.44324 -12.40471 -12.37778 -12.20034 -12.11897 -11.82484 -11.71944 -11.37955 -11.18812 -11.02303 -10.86596 -10.76828 -10.34689 -9.61387 -8.95324 -8.67684 -8.45936 -6.14349 0.54034 0.78703 0.80780 1.33876 1.40699 1.45060 1.48961 1.50611 2.17219 2.18456 2.27608 2.83247 2.87279 3.20381 3.44266 3.47726 3.80116 3.87360 3.92007 4.00987 4.06783 4.13328 4.16575 4.25448 4.34912 4.38199 4.48431 4.55420 4.59690 4.67107 4.70057 4.76068 4.77081 4.79823 4.98399 5.09414 5.13956 5.16594 5.21486 5.23912 5.34111 5.67785 5.75481 5.78188 5.80956 6.04171 6.13314 6.26660 6.55527 6.72582 6.98502 7.34427 7.80846 8.77452 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016083 B = 0.001917 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.514021 B =14601.586152 C =15678.595372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.026 4.026 3 Si 1.020 2.980 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.235 6.235 10 C 0.109 3.891 11 C -0.247 4.247 12 C -0.075 4.075 13 C -0.178 4.178 14 C -0.026 4.026 15 C -0.084 4.084 16 C 0.511 3.489 17 O -0.564 6.564 18 N -0.628 5.628 19 C -0.020 4.020 20 C 0.022 3.978 21 N -0.320 5.320 22 N -0.366 5.366 23 C 0.168 3.832 24 C -0.191 4.191 25 C -0.174 4.174 26 C -0.158 4.158 27 C 0.043 3.957 28 C -0.191 4.191 29 H 0.272 0.728 30 H 0.116 0.884 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.127 0.873 34 H 0.150 0.850 35 H 0.431 0.569 36 H 0.174 0.826 37 H 0.095 0.905 38 H 0.137 0.863 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.120 0.880 44 H 0.229 0.771 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.586 -31.665 -1.823 31.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.223 4.223 3 Si 0.839 3.161 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.142 6.142 10 C 0.060 3.940 11 C -0.266 4.266 12 C -0.093 4.093 13 C -0.197 4.197 14 C -0.026 4.026 15 C -0.123 4.123 16 C 0.300 3.700 17 O -0.442 6.442 18 N -0.276 5.276 19 C -0.125 4.125 20 C -0.164 4.164 21 N -0.143 5.143 22 N -0.150 5.150 23 C 0.049 3.951 24 C -0.210 4.210 25 C -0.211 4.211 26 C -0.196 4.196 27 C -0.106 4.106 28 C -0.211 4.211 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.145 0.855 34 H 0.168 0.832 35 H 0.271 0.729 36 H 0.191 0.809 37 H 0.113 0.887 38 H 0.155 0.845 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.138 0.862 44 H 0.245 0.755 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.824 -31.345 -3.829 31.630 hybrid contribution 0.038 1.627 0.731 1.784 sum -1.785 -29.718 -3.098 29.932 Atomic orbital electron populations 1.70191 1.08010 1.28773 1.49099 1.26618 0.96912 1.02768 0.95953 0.84639 0.77381 0.74211 0.79905 1.18452 1.19484 1.17897 1.21775 0.92469 0.81545 1.53206 0.88300 1.83933 1.35911 1.12574 1.81818 1.19908 0.91681 0.87986 0.94468 1.21294 0.93158 1.00231 1.11923 1.21137 1.00188 0.91577 0.96435 1.20993 0.93566 0.97995 1.07100 1.19181 0.93697 0.92875 0.96891 1.20656 1.04639 0.93507 0.93478 1.21096 0.76602 0.80243 0.92075 1.90664 1.51330 1.60853 1.41310 1.42627 1.59050 1.19763 1.06145 1.17937 1.11268 0.96876 0.86371 1.24302 1.01521 1.00432 0.90108 1.77306 1.17405 0.96429 1.23167 1.48701 1.45572 1.16238 1.04521 1.21581 0.95928 0.83157 0.94470 1.22489 0.95660 1.00103 1.02788 1.23205 0.92501 1.03562 1.01785 1.23078 1.02319 0.98729 0.95433 1.22608 1.03166 0.98102 0.86678 1.20236 0.99310 0.90466 1.11044 0.91893 0.86605 0.83826 0.83345 0.85519 0.83196 0.72923 0.80884 0.88671 0.84517 0.90100 0.86347 0.89564 0.88765 0.86162 0.75456 0.87529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.73 13.67 21.61 0.30 -58.44 16 2 C -0.03 -1.51 5.49 84.83 0.47 -1.05 16 3 Si 1.02 44.69 29.55 68.60 2.03 46.72 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 7 C -0.41 -25.34 9.49 67.92 0.64 -24.69 16 8 H 0.10 5.58 5.20 -2.91 -0.02 5.56 16 9 O -0.24 -14.99 9.76 -22.70 -0.22 -15.22 16 10 C 0.11 5.84 6.65 22.58 0.15 5.99 16 11 C -0.25 -11.56 9.17 22.39 0.21 -11.35 16 12 C -0.08 -2.78 10.04 22.25 0.22 -2.55 16 13 C -0.18 -5.81 9.70 22.30 0.22 -5.59 16 14 C -0.03 -0.89 4.37 -19.88 -0.09 -0.97 16 15 C -0.08 -1.80 5.83 29.10 0.17 -1.63 16 16 C 0.51 13.51 7.79 87.66 0.68 14.19 16 17 O -0.56 -21.52 13.19 -3.12 -0.04 -21.56 16 18 N -0.63 -11.50 5.47 -304.04 -1.66 -13.16 16 19 C -0.02 -0.46 6.90 37.62 0.26 -0.20 16 20 C 0.02 0.69 10.84 85.33 0.92 1.62 16 21 N -0.32 -9.25 12.22 -56.77 -0.69 -9.94 16 22 N -0.37 -6.86 3.70 -346.99 -1.29 -8.15 16 23 C 0.17 1.76 6.80 86.38 0.59 2.34 16 24 C -0.19 -2.58 5.93 -10.79 -0.06 -2.64 16 25 C -0.17 -1.66 10.18 30.62 0.31 -1.35 16 26 C -0.16 -1.36 10.25 30.62 0.31 -1.05 16 27 C 0.04 0.63 11.52 83.50 0.96 1.59 16 28 C -0.19 -8.65 9.65 22.39 0.22 -8.43 16 29 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 30 H 0.12 5.50 5.64 -2.91 -0.02 5.48 16 31 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 32 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 33 H 0.13 2.19 8.08 -2.38 -0.02 2.17 16 34 H 0.15 1.82 8.08 -2.39 -0.02 1.80 16 35 H 0.43 3.46 8.83 -92.71 -0.82 2.64 16 36 H 0.17 6.47 5.92 -2.91 -0.02 6.45 16 37 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.14 0.30 7.81 -2.39 -0.02 0.28 16 39 H 0.08 1.73 7.91 -2.39 -0.02 1.71 16 40 H 0.12 0.60 8.03 -2.39 -0.02 0.58 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.23 0.70 8.06 -2.91 -0.02 0.68 16 45 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -92.60 388.09 4.82 -87.79 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 0.22 Total: 27.75 kcal Atomic # 6 Polarization: -41.96 SS G_CDS: 6.18 Total: -35.78 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -3.35 Total: -89.69 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.26 Total: -36.78 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -92.60 4.82 -87.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179084180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.745 kcal (2) G-P(sol) polarization free energy of solvation -92.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds