Wall clock time and date at job start Sat Apr 11 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99881 * 2 1 4 4 H 1.48507 * 109.46766 * 269.99620 * 3 2 1 5 5 H 1.48498 * 109.47297 * 29.99051 * 3 2 1 6 6 H 1.48501 * 109.47187 * 149.99919 * 3 2 1 7 7 C 1.38714 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99879 * 180.02562 * 7 2 1 9 9 O 1.34783 * 120.00455 * 0.02562 * 7 2 1 10 10 C 1.35567 * 117.00492 * 185.05661 * 9 7 2 11 11 C 1.39182 * 119.89470 * 354.36232 * 10 9 7 12 12 C 1.37594 * 120.09640 * 180.02562 * 11 10 9 13 13 C 1.40027 * 119.90331 * 359.97438 * 12 11 10 14 14 C 1.46961 * 120.10017 * 180.02562 * 13 12 11 15 15 C 1.35029 * 119.99294 * 136.68279 * 14 13 12 16 16 C 1.46247 * 120.00410 * 348.68523 * 15 14 13 17 17 O 1.21721 * 119.99964 * 353.20909 * 16 15 14 18 18 N 1.34775 * 120.00204 * 173.21468 * 16 15 14 19 19 C 1.46497 * 120.00095 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47222 * 179.97438 * 19 18 16 21 21 C 1.53004 * 109.47389 * 180.02562 * 20 19 18 22 22 N 1.46504 * 109.47019 * 179.97438 * 21 20 19 23 23 C 1.36884 * 126.39067 * 90.00300 * 22 21 20 24 24 C 1.34673 * 106.81063 * 179.97438 * 23 22 21 25 25 N 1.34126 * 108.02158 * 359.97438 * 24 23 22 26 26 C 1.30501 * 109.25824 * 359.72522 * 25 24 23 27 27 C 1.40021 * 119.79698 * 0.27799 * 13 12 11 28 28 C 1.37602 * 119.89162 * 359.42343 * 27 13 12 29 29 H 0.96998 * 119.99691 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.95129 * 359.97059 * 11 10 9 31 31 H 1.08001 * 120.04886 * 180.02562 * 12 11 10 32 32 H 1.07994 * 120.00581 * 316.68093 * 14 13 12 33 33 H 1.08002 * 119.99093 * 168.68035 * 15 14 13 34 34 H 0.97001 * 119.99783 * 359.97438 * 18 16 15 35 35 H 1.09005 * 109.47065 * 60.00105 * 19 18 16 36 36 H 1.08996 * 109.47296 * 300.00040 * 19 18 16 37 37 H 1.09003 * 109.47313 * 60.00287 * 20 19 18 38 38 H 1.08996 * 109.47223 * 300.00337 * 20 19 18 39 39 H 1.08996 * 109.47156 * 300.00309 * 21 20 19 40 40 H 1.09003 * 109.46716 * 59.99852 * 21 20 19 41 41 H 1.07992 * 126.59794 * 359.96371 * 23 22 21 42 42 H 1.08005 * 125.98526 * 180.02562 * 24 23 22 43 43 H 1.07991 * 125.65327 * 180.29430 * 26 25 24 44 44 H 1.07994 * 120.05356 * 179.72124 * 27 13 12 45 45 H 1.08003 * 119.94827 * 180.27612 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0087 -1.2013 0.0005 8 1 3.0888 -1.2013 0.0010 9 8 1.3349 -2.3686 0.0005 10 6 2.0691 -3.5032 0.1075 11 6 3.4591 -3.4340 0.0925 12 6 4.2084 -4.5830 0.2003 13 6 3.5704 -5.8232 0.3258 14 6 4.3665 -7.0531 0.4418 15 6 4.0216 -7.9979 1.3427 16 6 3.0194 -7.7017 2.3658 17 8 2.5868 -6.5701 2.4844 18 7 2.5749 -8.6815 3.1774 19 6 1.5714 -8.3847 4.2026 20 6 1.2428 -9.6612 4.9793 21 6 0.1942 -9.3513 6.0497 22 7 -0.1209 -10.5739 6.7930 23 6 0.5068 -11.0210 7.9243 24 6 -0.0951 -12.1740 8.2738 25 7 -1.0641 -12.4236 7.3806 26 6 -1.0894 -11.4661 6.4942 27 6 2.1718 -5.8884 0.3351 28 6 1.4307 -4.7335 0.2329 29 1 -0.4849 0.8400 -0.0004 30 1 3.9503 -2.4771 -0.0048 31 1 5.2869 -4.5283 0.1890 32 1 5.2271 -7.2012 -0.1935 33 1 4.4859 -8.9724 1.3076 34 1 2.9195 -9.5833 3.0827 35 1 0.6667 -8.0063 3.7267 36 1 1.9632 -7.6329 4.8877 37 1 2.1473 -10.0400 5.4553 38 1 0.8508 -10.4127 4.2941 39 1 0.5858 -8.5997 6.7350 40 1 -0.7102 -8.9728 5.5734 41 1 1.3270 -10.5416 8.4378 42 1 0.1576 -12.7892 9.1247 43 1 -1.7701 -11.3999 5.6584 44 1 1.6755 -6.8431 0.4271 45 1 0.3518 -4.7823 0.2445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229995400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:40 Heat of formation + Delta-G solvation = 53.497322 kcal Electronic energy + Delta-G solvation = -27357.828699 eV Core-core repulsion = 23343.236172 eV Total energy + Delta-G solvation = -4014.592526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.35090 -39.84026 -38.77154 -36.89573 -36.12619 -34.25998 -33.09595 -32.17744 -31.21308 -30.15626 -29.73536 -28.17340 -26.30792 -25.39786 -23.38636 -22.23248 -21.80816 -21.66571 -21.27234 -20.91940 -19.28364 -17.97328 -17.83500 -17.24787 -16.67937 -16.15122 -15.77659 -15.54621 -14.88017 -14.73616 -14.58880 -14.31011 -14.23636 -14.12793 -13.77556 -13.58434 -13.48251 -13.32152 -13.07018 -12.84542 -12.81706 -12.49991 -12.21652 -12.13772 -11.72272 -11.54672 -11.39351 -11.03944 -10.72537 -10.65258 -10.44017 -10.30887 -10.02266 -9.56517 -9.46667 -9.20285 -9.09436 -8.86268 -8.72816 -7.96467 -6.90282 -6.48656 -4.04416 1.18849 1.70527 2.35320 2.38976 2.66039 2.86598 3.11502 3.12820 3.17240 3.21683 3.56560 3.94627 4.10149 4.34008 4.39878 4.41045 4.61451 4.66296 4.76163 4.83370 5.03412 5.08754 5.11500 5.18368 5.22722 5.31926 5.34653 5.51845 5.53517 5.66509 5.70547 5.80825 5.91246 6.21224 6.27964 6.35080 6.39493 6.42300 6.55630 6.75037 6.81859 6.99870 7.09288 7.32427 7.40990 7.47149 7.55626 7.74690 7.88643 7.97986 8.44920 8.96998 9.68517 10.69091 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.001872 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.279140 B =14950.185943 C =16364.876790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.390 4.390 8 H 0.094 0.906 9 O -0.172 6.172 10 C 0.171 3.829 11 C -0.251 4.251 12 C -0.041 4.041 13 C -0.192 4.192 14 C 0.030 3.970 15 C -0.270 4.270 16 C 0.539 3.461 17 O -0.509 6.509 18 N -0.739 5.739 19 C 0.124 3.876 20 C -0.145 4.145 21 C 0.106 3.894 22 N -0.458 5.458 23 C -0.056 4.056 24 C -0.033 4.033 25 N -0.498 5.498 26 C 0.182 3.818 27 C 0.012 3.988 28 C -0.203 4.203 29 H 0.271 0.729 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.396 0.604 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.173 0.827 42 H 0.168 0.832 43 H 0.204 0.796 44 H 0.101 0.899 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.460 -20.563 9.630 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.466 4.466 8 H 0.111 0.889 9 O -0.074 6.074 10 C 0.116 3.884 11 C -0.270 4.270 12 C -0.059 4.059 13 C -0.193 4.193 14 C 0.011 3.989 15 C -0.291 4.291 16 C 0.329 3.671 17 O -0.385 6.385 18 N -0.392 5.392 19 C -0.001 4.001 20 C -0.184 4.184 21 C -0.017 4.017 22 N -0.140 5.140 23 C -0.189 4.189 24 C -0.180 4.180 25 N -0.216 5.216 26 C -0.101 4.101 27 C -0.006 4.006 28 C -0.222 4.222 29 H 0.081 0.919 30 H 0.144 0.856 31 H 0.124 0.876 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.229 0.771 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.190 0.810 42 H 0.185 0.815 43 H 0.221 0.779 44 H 0.119 0.881 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.189 -20.031 9.648 22.625 hybrid contribution 1.308 0.971 0.091 1.632 sum 5.497 -19.060 9.739 22.099 Atomic orbital electron populations 1.70025 1.06028 1.27789 1.45524 1.25333 0.95856 0.98929 0.96462 0.85694 0.78964 0.79937 0.78746 1.19811 1.20216 1.19131 1.21399 0.91928 0.80767 1.52517 0.88869 1.83903 1.34791 1.11669 1.77083 1.19528 0.90267 0.87740 0.90830 1.20956 0.93659 0.98804 1.13564 1.20746 0.97902 0.91557 0.95708 1.18293 0.93025 0.92256 1.15691 1.22350 0.93775 0.91279 0.91532 1.22564 1.05333 1.01053 1.00159 1.18506 0.81888 0.84737 0.81949 1.91010 1.57058 1.20447 1.70012 1.45926 1.44304 1.12479 1.36521 1.21095 0.92801 0.95807 0.90356 1.22140 0.99579 0.98868 0.97785 1.21830 1.00631 0.84658 0.94587 1.45611 1.26819 1.20061 1.21536 1.22779 1.03733 1.00061 0.92366 1.22325 0.96960 0.97335 1.01413 1.70304 1.21258 1.25186 1.04857 1.25056 0.95296 0.87739 1.01984 1.20428 0.92091 0.96160 0.91957 1.20000 0.99291 0.90242 1.12697 0.91933 0.85630 0.87595 0.86040 0.86164 0.77067 0.91057 0.91265 0.90530 0.90387 0.88422 0.88100 0.80964 0.81456 0.77942 0.88140 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.24 13.67 55.48 0.76 -24.48 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.39 -11.00 9.48 30.91 0.29 -10.71 16 8 H 0.09 2.43 5.18 -52.48 -0.27 2.16 16 9 O -0.17 -5.01 9.74 0.75 0.01 -5.00 16 10 C 0.17 4.29 6.66 -38.88 -0.26 4.04 16 11 C -0.25 -5.63 9.14 -39.47 -0.36 -5.99 16 12 C -0.04 -0.78 9.78 -39.15 -0.38 -1.16 16 13 C -0.19 -3.44 4.54 -105.03 -0.48 -3.92 16 14 C 0.03 0.41 9.80 -37.19 -0.36 0.04 16 15 C -0.27 -3.18 9.90 -37.51 -0.37 -3.55 16 16 C 0.54 7.33 6.77 -13.04 -0.09 7.24 16 17 O -0.51 -9.39 12.18 5.17 0.06 -9.32 16 18 N -0.74 -6.89 5.55 -61.76 -0.34 -7.24 16 19 C 0.12 1.01 5.67 -4.04 -0.02 0.99 16 20 C -0.15 -0.74 5.65 -26.73 -0.15 -0.89 16 21 C 0.11 0.52 6.15 -4.04 -0.02 0.49 16 22 N -0.46 -3.18 2.75 -118.58 -0.33 -3.51 16 23 C -0.06 -0.41 11.58 -16.56 -0.19 -0.60 16 24 C -0.03 -0.29 11.87 -17.81 -0.21 -0.50 16 25 N -0.50 -5.38 11.25 -14.67 -0.17 -5.54 16 26 C 0.18 1.49 12.56 -90.38 -1.14 0.36 16 27 C 0.01 0.24 6.59 -39.15 -0.26 -0.02 16 28 C -0.20 -4.56 9.97 -39.47 -0.39 -4.96 16 29 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.13 2.79 5.62 -52.49 -0.29 2.50 16 31 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.40 2.54 8.45 -40.82 -0.34 2.19 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 42 H 0.17 1.13 8.06 -52.48 -0.42 0.70 16 43 H 0.20 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.10 1.76 7.02 -52.49 -0.37 1.39 16 45 H 0.11 2.48 8.06 -52.48 -0.42 2.06 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -36.43 387.49 -9.60 -46.03 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.91 Total: 5.89 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -4.50 Total: -18.17 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.08 Total: -40.76 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.07 Total: -14.32 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.43 -9.60 -46.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229995400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.523 kcal (2) G-P(sol) polarization free energy of solvation -36.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds