Wall clock time and date at job start Sat Apr 11 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00143 * 2 1 4 4 H 1.48494 * 109.47472 * 240.00118 * 3 2 1 5 5 H 1.48502 * 109.46902 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46890 * 120.00002 * 3 2 1 7 7 C 1.37878 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00418 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99948 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47090 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.47286 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.53807 * 68.37745 * 11 10 9 13 13 O 1.42094 * 110.54375 * 291.63021 * 11 10 9 14 14 N 1.65595 * 104.45038 * 179.97438 * 11 10 9 15 15 C 1.46494 * 119.99981 * 65.00485 * 14 11 10 16 16 C 1.53004 * 109.47388 * 165.00026 * 15 14 11 17 17 C 1.52998 * 109.47523 * 179.97438 * 16 15 14 18 18 O 1.42893 * 109.47460 * 179.97438 * 17 16 15 19 19 C 1.42896 * 114.00368 * 180.02562 * 18 17 16 20 20 C 1.52995 * 109.47376 * 180.02562 * 19 18 17 21 21 C 1.50707 * 109.47301 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 19 27 27 H 0.97001 * 119.99769 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47078 * 60.00550 * 9 7 2 29 29 H 1.09002 * 109.46940 * 300.00322 * 9 7 2 30 30 H 1.09007 * 109.47208 * 60.00117 * 10 9 7 31 31 H 1.09000 * 109.47464 * 300.00149 * 10 9 7 32 32 H 0.97007 * 120.00003 * 245.00019 * 14 11 10 33 33 H 1.08993 * 109.47320 * 44.99806 * 15 14 11 34 34 H 1.09004 * 109.47395 * 284.99624 * 15 14 11 35 35 H 1.08998 * 109.47484 * 59.99430 * 16 15 14 36 36 H 1.09001 * 109.46810 * 299.99694 * 16 15 14 37 37 H 1.09006 * 109.46948 * 59.99612 * 17 16 15 38 38 H 1.08998 * 109.47057 * 300.00511 * 17 16 15 39 39 H 1.08995 * 109.47430 * 59.99865 * 19 18 17 40 40 H 1.09004 * 109.46934 * 300.00059 * 19 18 17 41 41 H 1.09005 * 109.47610 * 60.00060 * 20 19 18 42 42 H 1.09000 * 109.47256 * 299.99402 * 20 19 18 43 43 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 44 44 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 45 45 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 46 46 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 47 47 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 16 1.3382 -5.2331 0.0002 12 8 0.6639 -5.4200 -1.2366 13 8 0.6646 -5.4193 1.2374 14 7 2.5204 -6.3927 -0.0006 15 6 3.4195 -6.5229 1.1487 16 6 4.1505 -7.8650 1.0749 17 6 5.0900 -8.0007 2.2748 18 8 5.7723 -9.2543 2.2062 19 6 6.6793 -9.4824 3.2867 20 6 7.3497 -10.8463 3.1105 21 6 8.3067 -11.0865 4.2497 22 6 7.8666 -11.7101 5.4023 23 6 8.7446 -11.9310 6.4469 24 6 10.0627 -11.5287 6.3389 25 6 10.5015 -10.9003 5.1884 26 6 9.6247 -10.6837 4.1419 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5568 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8719 -3.6044 0.8895 31 1 2.8719 -3.6044 -0.8905 32 1 2.6174 -6.9859 -0.7620 33 1 2.8401 -6.4750 2.0706 34 1 4.1473 -5.7115 1.1344 35 1 4.7300 -7.9130 0.1530 36 1 3.4228 -8.6763 1.0893 37 1 4.5109 -7.9525 3.1970 38 1 5.8177 -7.1892 2.2601 39 1 6.1329 -9.4648 4.2296 40 1 7.4403 -8.7020 3.2931 41 1 7.8963 -10.8635 2.1676 42 1 6.5890 -11.6269 3.1039 43 1 6.8369 -12.0248 5.4865 44 1 8.4007 -12.4178 7.3475 45 1 10.7487 -11.7017 7.1549 46 1 11.5302 -10.5821 5.1057 47 1 9.9687 -10.1971 3.2412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264765841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:52 Heat of formation + Delta-G solvation = -121.189311 kcal Electronic energy + Delta-G solvation = -25539.232160 eV Core-core repulsion = 21620.215853 eV Total energy + Delta-G solvation = -3919.016307 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.80066 -38.42218 -36.64522 -36.02783 -35.41475 -33.92126 -33.89539 -31.38430 -31.33016 -31.16522 -28.82733 -25.60532 -25.15564 -23.76959 -23.01913 -22.08971 -21.60697 -21.21195 -18.91136 -17.44820 -17.39668 -16.93969 -16.76885 -16.43391 -15.93677 -15.71713 -15.43167 -15.37745 -14.96353 -14.76881 -14.57930 -14.39500 -13.86152 -13.50219 -13.41446 -13.30503 -13.18939 -12.55288 -12.50738 -12.10670 -12.02415 -11.75776 -11.60128 -11.55056 -11.52651 -11.46567 -11.37509 -11.20205 -11.16833 -11.07317 -10.97139 -10.44462 -10.37965 -9.91705 -9.79945 -9.50824 -9.36195 -9.17125 -9.03561 -8.50541 -6.12832 -4.18578 0.78706 0.87919 0.95794 3.00917 3.24918 3.26546 3.31520 3.33203 3.47977 4.24605 4.36976 4.37370 4.42526 4.57643 4.64956 4.68232 4.70214 4.72069 4.74892 4.79253 5.02339 5.05233 5.07988 5.08514 5.21141 5.22251 5.24782 5.40679 5.42474 5.45106 5.55036 5.62778 5.66501 5.67113 5.78887 5.86978 6.02270 6.06219 6.08149 6.18104 6.48247 6.55944 6.85893 7.08026 7.29744 7.36135 7.79749 8.16998 8.84540 9.46118 10.98099 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014524 B = 0.001558 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.336325 B =17966.847078 C =19340.248236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.589 4.589 11 S 2.595 3.405 12 O -0.967 6.967 13 O -0.967 6.967 14 N -1.128 6.128 15 C 0.117 3.883 16 C -0.124 4.124 17 C 0.063 3.937 18 O -0.389 6.389 19 C 0.069 3.931 20 C -0.080 4.080 21 C -0.083 4.083 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.119 4.119 26 C -0.115 4.115 27 H 0.266 0.734 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.413 0.587 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.760 -23.914 9.607 32.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.723 4.723 11 S 2.692 3.308 12 O -0.957 6.957 13 O -0.957 6.957 14 N -0.885 5.885 15 C -0.009 4.009 16 C -0.163 4.163 17 C -0.014 4.014 18 O -0.309 6.309 19 C -0.008 4.008 20 C -0.117 4.117 21 C -0.083 4.083 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.137 4.137 26 C -0.133 4.133 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.246 0.754 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 18.598 -24.018 9.632 31.867 hybrid contribution 1.255 1.196 -0.046 1.734 sum 19.853 -22.822 9.586 31.731 Atomic orbital electron populations 1.69946 1.06103 1.27305 1.49433 1.25066 0.94974 0.99520 0.94894 0.86525 0.79485 0.82546 0.78670 1.20100 1.21071 1.20113 1.20970 0.93022 0.89816 1.52327 0.92107 1.18966 0.92715 0.90550 0.98940 1.30443 1.13712 1.18086 1.10038 1.05501 0.74617 0.76573 0.74106 1.93556 1.71599 1.85336 1.45257 1.93537 1.71419 1.84998 1.45745 1.55776 1.52986 1.52395 1.27344 1.21118 0.93010 0.97478 0.89332 1.21655 0.98430 0.97604 0.98594 1.22430 0.94719 0.85707 0.98553 1.87827 1.58099 1.37699 1.47252 1.22427 0.91980 0.96582 0.89810 1.20477 0.97474 0.96929 0.96813 1.19748 0.94381 0.98774 0.95370 1.21121 0.99856 0.99140 0.93151 1.21181 0.93745 0.99996 0.98777 1.21196 0.96071 0.98879 0.98013 1.21180 0.99757 0.99055 0.93708 1.21117 0.93097 0.99934 0.99124 0.92473 0.94785 0.94790 0.86363 0.86077 0.75390 0.90019 0.91510 0.90323 0.90196 0.92714 0.92761 0.93078 0.93103 0.90020 0.90007 0.85895 0.85972 0.86093 0.85974 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 10 C -0.59 -10.98 6.01 37.16 0.22 -10.75 16 11 S 2.59 45.20 5.46 -107.50 -0.59 44.62 16 12 O -0.97 -19.85 18.08 -57.54 -1.04 -20.89 16 13 O -0.97 -19.73 17.50 -57.54 -1.01 -20.74 16 14 N -1.13 -13.95 5.88 -10.62 -0.06 -14.01 16 15 C 0.12 1.22 6.13 -4.04 -0.02 1.20 16 16 C -0.12 -1.09 5.73 -26.73 -0.15 -1.25 16 17 C 0.06 0.53 5.94 37.16 0.22 0.75 16 18 O -0.39 -3.67 10.34 -35.23 -0.36 -4.04 16 19 C 0.07 0.52 5.92 37.15 0.22 0.74 16 20 C -0.08 -0.53 5.71 -27.88 -0.16 -0.69 16 21 C -0.08 -0.57 5.13 -104.62 -0.54 -1.11 16 22 C -0.11 -0.76 9.70 -39.58 -0.38 -1.15 16 23 C -0.12 -0.74 10.05 -39.58 -0.40 -1.13 16 24 C -0.12 -0.75 10.05 -39.58 -0.40 -1.14 16 25 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16 26 C -0.11 -0.76 9.70 -39.58 -0.38 -1.14 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 31 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 32 H 0.41 4.30 8.62 -34.47 -0.30 4.00 16 33 H 0.08 0.89 7.70 -51.93 -0.40 0.49 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 43 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 44 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 45 H 0.12 0.50 8.06 -52.49 -0.42 0.08 16 46 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 47 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 409.46 15.07 6.17 6.17 Total: -1.00 -35.75 409.46 -11.74 -47.49 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.84 Total: 0.33 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: -2.72 Total: -29.38 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.67 Total: -39.65 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -2.41 Total: -45.66 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 45.20 SS G_CDS: -0.59 Total: 44.62 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.75 -11.74 -47.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264765841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.704 kcal (2) G-P(sol) polarization free energy of solvation -35.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds