Wall clock time and date at job start Sat Apr 11 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00143 * 2 1 4 4 H 1.48494 * 109.47472 * 240.00118 * 3 2 1 5 5 H 1.48502 * 109.46902 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46890 * 120.00002 * 3 2 1 7 7 C 1.37878 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00418 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99948 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47090 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.47286 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.53807 * 68.37745 * 11 10 9 13 13 O 1.42094 * 110.54375 * 291.63021 * 11 10 9 14 14 N 1.65595 * 104.45038 * 179.97438 * 11 10 9 15 15 C 1.46494 * 119.99981 * 65.00485 * 14 11 10 16 16 C 1.53004 * 109.47388 * 165.00026 * 15 14 11 17 17 C 1.52998 * 109.47523 * 179.97438 * 16 15 14 18 18 O 1.42893 * 109.47460 * 179.97438 * 17 16 15 19 19 C 1.42896 * 114.00368 * 180.02562 * 18 17 16 20 20 C 1.52995 * 109.47376 * 180.02562 * 19 18 17 21 21 C 1.50707 * 109.47301 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 19 27 27 H 0.97001 * 119.99769 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47078 * 60.00550 * 9 7 2 29 29 H 1.09002 * 109.46940 * 300.00322 * 9 7 2 30 30 H 1.09007 * 109.47208 * 60.00117 * 10 9 7 31 31 H 1.09000 * 109.47464 * 300.00149 * 10 9 7 32 32 H 0.97007 * 120.00003 * 245.00019 * 14 11 10 33 33 H 1.08993 * 109.47320 * 44.99806 * 15 14 11 34 34 H 1.09004 * 109.47395 * 284.99624 * 15 14 11 35 35 H 1.08998 * 109.47484 * 59.99430 * 16 15 14 36 36 H 1.09001 * 109.46810 * 299.99694 * 16 15 14 37 37 H 1.09006 * 109.46948 * 59.99612 * 17 16 15 38 38 H 1.08998 * 109.47057 * 300.00511 * 17 16 15 39 39 H 1.08995 * 109.47430 * 59.99865 * 19 18 17 40 40 H 1.09004 * 109.46934 * 300.00059 * 19 18 17 41 41 H 1.09005 * 109.47610 * 60.00060 * 20 19 18 42 42 H 1.09000 * 109.47256 * 299.99402 * 20 19 18 43 43 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 44 44 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 45 45 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 46 46 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 47 47 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 16 1.3382 -5.2331 0.0002 12 8 0.6639 -5.4200 -1.2366 13 8 0.6646 -5.4193 1.2374 14 7 2.5204 -6.3927 -0.0006 15 6 3.4195 -6.5229 1.1487 16 6 4.1505 -7.8650 1.0749 17 6 5.0900 -8.0007 2.2748 18 8 5.7723 -9.2543 2.2062 19 6 6.6793 -9.4824 3.2867 20 6 7.3497 -10.8463 3.1105 21 6 8.3067 -11.0865 4.2497 22 6 7.8666 -11.7101 5.4023 23 6 8.7446 -11.9310 6.4469 24 6 10.0627 -11.5287 6.3389 25 6 10.5015 -10.9003 5.1884 26 6 9.6247 -10.6837 4.1419 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5568 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8719 -3.6044 0.8895 31 1 2.8719 -3.6044 -0.8905 32 1 2.6174 -6.9859 -0.7620 33 1 2.8401 -6.4750 2.0706 34 1 4.1473 -5.7115 1.1344 35 1 4.7300 -7.9130 0.1530 36 1 3.4228 -8.6763 1.0893 37 1 4.5109 -7.9525 3.1970 38 1 5.8177 -7.1892 2.2601 39 1 6.1329 -9.4648 4.2296 40 1 7.4403 -8.7020 3.2931 41 1 7.8963 -10.8635 2.1676 42 1 6.5890 -11.6269 3.1039 43 1 6.8369 -12.0248 5.4865 44 1 8.4007 -12.4178 7.3475 45 1 10.7487 -11.7017 7.1549 46 1 11.5302 -10.5821 5.1057 47 1 9.9687 -10.1971 3.2412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264765841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:51 Heat of formation + Delta-G solvation = -145.285963 kcal Electronic energy + Delta-G solvation = -25540.277069 eV Core-core repulsion = 21620.215853 eV Total energy + Delta-G solvation = -3920.061216 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.25997 -39.05940 -38.15110 -37.07277 -36.85388 -35.87219 -34.46548 -33.10269 -32.17829 -31.76596 -29.36947 -27.57002 -25.92792 -24.32058 -23.59982 -23.46009 -22.70082 -21.73009 -20.26798 -19.05911 -18.21043 -18.00616 -17.52132 -17.41130 -17.02089 -16.97931 -16.51632 -16.22408 -15.97385 -15.86319 -15.47364 -15.36306 -15.01750 -14.46354 -14.29831 -14.03275 -13.93830 -13.77543 -13.70173 -13.45751 -13.18903 -13.09783 -12.89376 -12.79757 -12.72861 -12.63235 -12.39495 -12.20065 -12.14935 -12.03095 -11.99585 -11.86151 -11.74348 -11.68989 -11.15785 -10.62434 -10.53903 -10.32894 -9.81683 -9.63580 -8.24516 -6.38513 -0.65179 0.41566 0.50341 1.41827 1.45090 1.53235 1.85782 2.39115 2.60169 2.84444 2.95149 3.08947 3.31522 3.88754 3.90651 3.93992 4.03219 4.10426 4.11005 4.17863 4.20052 4.20735 4.31454 4.40549 4.50091 4.53058 4.58638 4.63614 4.64556 4.66720 4.75890 4.80725 4.94614 4.99631 5.16530 5.19103 5.19439 5.27803 5.30176 5.31699 5.58147 5.64050 5.69867 5.71273 6.07758 6.12781 6.14660 6.25672 6.75225 7.31627 8.87387 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014524 B = 0.001558 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.336325 B =17966.847078 C =19340.248236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.018 3.982 10 C -0.587 4.587 11 S 2.623 3.377 12 O -1.001 7.001 13 O -0.998 6.998 14 N -1.109 6.109 15 C 0.107 3.893 16 C -0.117 4.117 17 C 0.060 3.940 18 O -0.405 6.405 19 C 0.068 3.932 20 C -0.074 4.074 21 C -0.093 4.093 22 C -0.128 4.128 23 C -0.129 4.129 24 C -0.132 4.132 25 C -0.128 4.128 26 C -0.127 4.127 27 H 0.267 0.733 28 H 0.006 0.994 29 H 0.008 0.992 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.425 0.575 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.130 0.870 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.476 -24.127 10.045 34.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.202 4.202 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.095 0.905 9 C -0.021 4.021 10 C -0.719 4.719 11 S 2.720 3.280 12 O -0.991 6.991 13 O -0.988 6.988 14 N -0.871 5.871 15 C -0.019 4.019 16 C -0.156 4.156 17 C -0.017 4.017 18 O -0.325 6.325 19 C -0.008 4.008 20 C -0.111 4.111 21 C -0.093 4.093 22 C -0.146 4.146 23 C -0.146 4.146 24 C -0.150 4.150 25 C -0.146 4.146 26 C -0.145 4.145 27 H 0.075 0.925 28 H 0.024 0.976 29 H 0.026 0.974 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.262 0.738 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.148 0.852 44 H 0.155 0.845 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 21.328 -24.240 10.063 33.819 hybrid contribution 0.449 1.160 -0.146 1.252 sum 21.778 -23.080 9.917 33.246 Atomic orbital electron populations 1.70100 1.08067 1.28322 1.50852 1.26114 0.95839 1.03860 0.94419 0.85369 0.78119 0.77353 0.79427 1.18851 1.21108 1.18728 1.21514 0.94043 0.90821 1.51551 0.90494 1.18839 0.93709 0.93141 0.96428 1.30329 1.12759 1.16329 1.12510 1.04342 0.74607 0.76464 0.72596 1.93504 1.73133 1.85844 1.46622 1.93497 1.72786 1.85474 1.47063 1.55249 1.52373 1.50834 1.28617 1.21413 0.93065 0.99399 0.88061 1.21564 0.98325 0.96319 0.99360 1.22480 0.94987 0.85853 0.98395 1.87796 1.58522 1.38191 1.48009 1.22495 0.91831 0.97100 0.89388 1.20418 0.97358 0.96502 0.96862 1.19834 0.94653 0.99277 0.95557 1.21326 1.00495 0.99387 0.93374 1.21453 0.93926 0.99999 0.99271 1.21497 0.96414 0.98545 0.98560 1.21460 1.00582 0.98923 0.93641 1.21327 0.93177 1.00180 0.99779 0.92459 0.97566 0.97398 0.83742 0.83824 0.73817 0.90530 0.89168 0.89409 0.90722 0.92392 0.91504 0.92963 0.92655 0.89962 0.90163 0.85174 0.84460 0.84372 0.84385 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 42.86 29.54 68.60 2.03 44.89 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 5 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.54 -29.56 9.11 25.60 0.23 -29.33 16 8 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 9 C 0.02 0.91 4.98 29.85 0.15 1.06 16 10 C -0.59 -21.17 6.01 71.98 0.43 -20.74 16 11 S 2.62 89.91 5.46 -56.49 -0.31 89.60 16 12 O -1.00 -41.14 18.08 -127.65 -2.31 -43.45 16 13 O -1.00 -40.75 17.50 -127.65 -2.23 -42.99 16 14 N -1.11 -25.20 5.88 -187.50 -1.10 -26.30 16 15 C 0.11 1.95 6.13 86.38 0.53 2.48 16 16 C -0.12 -1.79 5.73 30.59 0.18 -1.61 16 17 C 0.06 0.88 5.94 71.98 0.43 1.31 16 18 O -0.41 -7.01 10.34 -148.98 -1.54 -8.55 16 19 C 0.07 0.95 5.92 71.98 0.43 1.37 16 20 C -0.07 -0.93 5.71 29.85 0.17 -0.76 16 21 C -0.09 -1.22 5.13 -19.86 -0.10 -1.32 16 22 C -0.13 -1.61 9.70 22.27 0.22 -1.40 16 23 C -0.13 -1.46 10.05 22.27 0.22 -1.23 16 24 C -0.13 -1.42 10.05 22.27 0.22 -1.20 16 25 C -0.13 -1.42 10.05 22.27 0.22 -1.20 16 26 C -0.13 -1.56 9.70 22.27 0.22 -1.34 16 27 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 28 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.14 4.40 8.14 -2.39 -0.02 4.38 16 31 H 0.14 4.50 8.14 -2.39 -0.02 4.49 16 32 H 0.43 7.90 8.62 -96.74 -0.83 7.07 16 33 H 0.08 1.52 7.70 -2.39 -0.02 1.50 16 34 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.08 1.00 8.09 -2.38 -0.02 0.98 16 42 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 43 H 0.13 1.33 8.06 -2.91 -0.02 1.30 16 44 H 0.14 1.02 8.06 -2.91 -0.02 0.99 16 45 H 0.14 0.91 8.06 -2.91 -0.02 0.88 16 46 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 47 H 0.13 1.27 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -77.69 409.46 -1.07 -78.76 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.11 Total: 18.02 kcal Atomic # 6 Polarization: -57.68 SS G_CDS: 4.01 Total: -53.67 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -0.82 Total: -82.61 kcal Atomic # 8 Polarization: -88.91 SS G_CDS: -6.08 Total: -94.99 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 89.91 SS G_CDS: -0.31 Total: 89.60 kcal Total: -77.69 -1.07 -78.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264765841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.529 kcal (2) G-P(sol) polarization free energy of solvation -77.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds